data_3CAP # _model_server_result.job_id nLFhB04upQjjFZkBk8zyyg _model_server_result.datetime_utc '2024-11-16 12:26:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3cap # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":801}' # _entry.id 3CAP # _exptl.entry_id 3CAP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 292.369 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-O-octyl-beta-D-glucopyranose _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3CAP _cell.length_a 242.917 _cell.length_b 242.918 _cell.length_c 110.42 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3CAP _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N ? 4 L N N ? 4 M N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 2 4 3 BMA BMA C1 O1 . O3 HO3 . sing 4 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG C 401 NAG 2 n C NAG 2 C 2 NAG C 402 NAG 2 n C BMA 3 C 3 BMA C 403 BMA 2 n C BMA 4 C 4 BMA C 404 BMA 3 n D NAG 1 D 1 NAG E 601 NAG 3 n D NAG 2 D 2 NAG E 602 NAG 2 n E NAG 1 E 1 NAG D 501 NAG 2 n E NAG 2 E 2 NAG D 502 NAG 2 n E BMA 3 E 3 BMA D 503 BMA 2 n E BMA 4 E 4 BMA D 504 BMA 3 n F NAG 1 F 1 NAG F 701 NAG 3 n F NAG 2 F 2 NAG F 702 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 110 A CYS 110 1_555 A SG CYS 187 A CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? disulf ? disulf2 B SG CYS 110 B CYS 110 1_555 B SG CYS 187 B CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? covale ? covale1 A ND2 ASN 2 A ASN 2 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale2 A ND2 ASN 15 A ASN 15 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale3 A SG CYS 322 A CYS 322 1_555 K C1 PLM . A PLM 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.806 ? covale ? covale4 B ND2 ASN 2 B ASN 2 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale5 B ND2 ASN 15 B ASN 15 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale6 B SG CYS 322 B CYS 322 1_555 N C1 PLM . B PLM 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.815 ? covale ? covale7 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale8 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale9 C O3 BMA . C BMA 3 1_555 C C1 BMA . C BMA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale10 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale11 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale12 E O4 NAG . E NAG 2 1_555 E C1 BMA . E BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? covale ? covale13 E O3 BMA . E BMA 3 1_555 E C1 BMA . E BMA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale14 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? # _chem_comp.formula 'C14 H28 O6' _chem_comp.formula_weight 292.369 _chem_comp.id BGL _chem_comp.mon_nstd_flag n _chem_comp.name 2-O-octyl-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms 2-O-octyl-beta-D-glucose;2-O-octyl-D-glucose;2-O-octyl-glucose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 BGL sing 70 n n C1 C2 BGL sing 71 n n C1 O5 BGL sing 72 n n C1 H1 BGL sing 73 n n O1 HO1 BGL sing 74 n n C2 O2 BGL sing 75 n n C2 C3 BGL sing 76 n n C2 H2 BGL sing 77 n n O2 C1' BGL sing 78 n n C3 O3 BGL sing 79 n n C3 C4 BGL sing 80 n n C3 H3 BGL sing 81 n n O3 HO3 BGL sing 82 n n C4 O4 BGL sing 83 n n C4 C5 BGL sing 84 n n C4 H4 BGL sing 85 n n O4 HO4 BGL sing 86 n n C5 O5 BGL sing 87 n n C5 C6 BGL sing 88 n n C5 H5 BGL sing 89 n n C6 O6 BGL sing 90 n n C6 H61 BGL sing 91 n n C6 H62 BGL sing 92 n n O6 HO6 BGL sing 93 n n C1' C2' BGL sing 94 n n C1' "H1'1" BGL sing 95 n n C1' "H1'2" BGL sing 96 n n C2' C3' BGL sing 97 n n C2' "H2'1" BGL sing 98 n n C2' "H2'2" BGL sing 99 n n C3' C4' BGL sing 100 n n C3' "H3'1" BGL sing 101 n n C3' "H3'2" BGL sing 102 n n C4' C5' BGL sing 103 n n C4' "H4'1" BGL sing 104 n n C4' "H4'2" BGL sing 105 n n C5' C6' BGL sing 106 n n C5' "H5'1" BGL sing 107 n n C5' "H5'2" BGL sing 108 n n C6' C7' BGL sing 109 n n C6' "H6'1" BGL sing 110 n n C6' "H6'2" BGL sing 111 n n C7' C8' BGL sing 112 n n C7' "H7'1" BGL sing 113 n n C7' "H7'2" BGL sing 114 n n C8' "H8'1" BGL sing 115 n n C8' "H8'2" BGL sing 116 n n C8' "H8'3" BGL sing 117 n n # _pdbx_chem_comp_identifier.comp_id BGL _pdbx_chem_comp_identifier.identifier b-D-Glcp2octyl _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 3CAP _atom_sites.fract_transf_matrix[1][1] 0.004117 _atom_sites.fract_transf_matrix[1][2] 0.002377 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004753 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009056 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 BGL A 1 801 801 BGL BGL . H 4 BGL A 1 802 802 BGL BGL . I 4 BGL A 1 803 803 BGL BGL . J 4 BGL A 1 804 804 BGL BGL . K 5 PLM A 1 901 901 PLM PLM . L 4 BGL B 1 805 805 BGL BGL . M 4 BGL B 1 806 806 BGL BGL . N 5 PLM B 1 902 902 PLM PLM . O 6 HOH A 1 902 1 HOH HOH . O 6 HOH A 2 903 4 HOH HOH . O 6 HOH A 3 904 5 HOH HOH . O 6 HOH A 4 905 8 HOH HOH . O 6 HOH A 5 906 9 HOH HOH . P 6 HOH B 1 903 2 HOH HOH . P 6 HOH B 2 904 3 HOH HOH . P 6 HOH B 3 905 6 HOH HOH . P 6 HOH B 4 906 7 HOH HOH . P 6 HOH B 5 907 10 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BGL . . . G 4 -15.972 -42.672 -15.099 1 210.42 ? C1 BGL 801 A 1 HETATM 2 O O1 BGL . . . G 4 -16.063 -42.752 -16.528 1 194.51 ? O1 BGL 801 A 1 HETATM 3 C C2 BGL . . . G 4 -14.86 -43.59 -14.588 1 194.69 ? C2 BGL 801 A 1 HETATM 4 O O2 BGL . . . G 4 -15.233 -44.969 -14.731 1 137.62 ? O2 BGL 801 A 1 HETATM 5 C C3 BGL . . . G 4 -14.532 -43.281 -13.124 1 206.33 ? C3 BGL 801 A 1 HETATM 6 O O3 BGL . . . G 4 -13.198 -42.751 -13.026 1 141.82 ? O3 BGL 801 A 1 HETATM 7 C C4 BGL . . . G 4 -15.526 -42.315 -12.458 1 155.48 ? C4 BGL 801 A 1 HETATM 8 O O4 BGL . . . G 4 -16.717 -43.018 -12.067 1 122.32 ? O4 BGL 801 A 1 HETATM 9 C C5 BGL . . . G 4 -15.903 -41.097 -13.315 1 177.15 ? C5 BGL 801 A 1 HETATM 10 O O5 BGL . . . G 4 -15.696 -41.321 -14.714 1 90.39 ? O5 BGL 801 A 1 HETATM 11 C C6 BGL . . . G 4 -15.103 -39.872 -12.877 1 139.81 ? C6 BGL 801 A 1 HETATM 12 O O6 BGL . . . G 4 -15.893 -38.692 -13.062 1 119.99 ? O6 BGL 801 A 1 HETATM 13 C C1' BGL . . . G 4 -14.119 -45.831 -14.991 1 127.38 ? C1' BGL 801 A 1 HETATM 14 C C2' BGL . . . G 4 -14.417 -46.772 -16.161 1 91.88 ? C2' BGL 801 A 1 HETATM 15 C C3' BGL . . . G 4 -14.021 -46.144 -17.496 1 112.07 ? C3' BGL 801 A 1 HETATM 16 C C4' BGL . . . G 4 -15.133 -45.255 -18.051 1 124.58 ? C4' BGL 801 A 1 HETATM 17 C C5' BGL . . . G 4 -14.578 -44.135 -18.93 1 148.29 ? C5' BGL 801 A 1 HETATM 18 C C6' BGL . . . G 4 -15.638 -43.074 -19.228 1 126.29 ? C6' BGL 801 A 1 HETATM 19 C C7' BGL . . . G 4 -15.315 -42.286 -20.495 1 78.67 ? C7' BGL 801 A 1 HETATM 20 C C8' BGL . . . G 4 -16.585 -41.81 -21.173 1 92.63 ? C8' BGL 801 A 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 17 _model_server_stats.element_count 20 #