data_3CAP # _model_server_result.job_id NlOwVkOsxk5onmThMT8wiQ _model_server_result.datetime_utc '2024-11-16 12:59:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3cap # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":901}' # _entry.id 3CAP # _exptl.entry_id 3CAP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 256.424 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PALMITIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3CAP _cell.length_a 242.917 _cell.length_b 242.918 _cell.length_c 110.42 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3CAP _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 K N N ? 5 N N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 2 4 3 BMA BMA C1 O1 . O3 HO3 . sing 4 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG C 401 NAG 2 n C NAG 2 C 2 NAG C 402 NAG 2 n C BMA 3 C 3 BMA C 403 BMA 2 n C BMA 4 C 4 BMA C 404 BMA 3 n D NAG 1 D 1 NAG E 601 NAG 3 n D NAG 2 D 2 NAG E 602 NAG 2 n E NAG 1 E 1 NAG D 501 NAG 2 n E NAG 2 E 2 NAG D 502 NAG 2 n E BMA 3 E 3 BMA D 503 BMA 2 n E BMA 4 E 4 BMA D 504 BMA 3 n F NAG 1 F 1 NAG F 701 NAG 3 n F NAG 2 F 2 NAG F 702 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 110 A CYS 110 1_555 A SG CYS 187 A CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? disulf ? disulf2 B SG CYS 110 B CYS 110 1_555 B SG CYS 187 B CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? covale ? covale1 A ND2 ASN 2 A ASN 2 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale2 A ND2 ASN 15 A ASN 15 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale3 A SG CYS 322 A CYS 322 1_555 K C1 PLM . A PLM 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.806 ? covale ? covale4 B ND2 ASN 2 B ASN 2 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale5 B ND2 ASN 15 B ASN 15 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale6 B SG CYS 322 B CYS 322 1_555 N C1 PLM . B PLM 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.815 ? covale ? covale7 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale8 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale9 C O3 BMA . C BMA 3 1_555 C C1 BMA . C BMA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale10 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale11 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale12 E O4 NAG . E NAG 2 1_555 E C1 BMA . E BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? covale ? covale13 E O3 BMA . E BMA 3 1_555 E C1 BMA . E BMA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale14 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? # _chem_comp.formula 'C16 H32 O2' _chem_comp.formula_weight 256.424 _chem_comp.id PLM _chem_comp.mon_nstd_flag . _chem_comp.name 'PALMITIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PLM sing 362 n n C1 O2 PLM doub 363 n n C1 C2 PLM sing 364 n n O1 H PLM sing 365 n n C2 C3 PLM sing 366 n n C2 H21 PLM sing 367 n n C2 H22 PLM sing 368 n n C3 C4 PLM sing 369 n n C3 H31 PLM sing 370 n n C3 H32 PLM sing 371 n n C4 C5 PLM sing 372 n n C4 H41 PLM sing 373 n n C4 H42 PLM sing 374 n n C5 C6 PLM sing 375 n n C5 H51 PLM sing 376 n n C5 H52 PLM sing 377 n n C6 C7 PLM sing 378 n n C6 H61 PLM sing 379 n n C6 H62 PLM sing 380 n n C7 C8 PLM sing 381 n n C7 H71 PLM sing 382 n n C7 H72 PLM sing 383 n n C8 C9 PLM sing 384 n n C8 H81 PLM sing 385 n n C8 H82 PLM sing 386 n n C9 CA PLM sing 387 n n C9 H91 PLM sing 388 n n C9 H92 PLM sing 389 n n CA CB PLM sing 390 n n CA HA1 PLM sing 391 n n CA HA2 PLM sing 392 n n CB CC PLM sing 393 n n CB HB1 PLM sing 394 n n CB HB2 PLM sing 395 n n CC CD PLM sing 396 n n CC HC1 PLM sing 397 n n CC HC2 PLM sing 398 n n CD CE PLM sing 399 n n CD HD1 PLM sing 400 n n CD HD2 PLM sing 401 n n CE CF PLM sing 402 n n CE HE1 PLM sing 403 n n CE HE2 PLM sing 404 n n CF CG PLM sing 405 n n CF HF1 PLM sing 406 n n CF HF2 PLM sing 407 n n CG HG1 PLM sing 408 n n CG HG2 PLM sing 409 n n CG HG3 PLM sing 410 n n # _atom_sites.entry_id 3CAP _atom_sites.fract_transf_matrix[1][1] 0.004117 _atom_sites.fract_transf_matrix[1][2] 0.002377 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004753 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009056 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 BGL A 1 801 801 BGL BGL . H 4 BGL A 1 802 802 BGL BGL . I 4 BGL A 1 803 803 BGL BGL . J 4 BGL A 1 804 804 BGL BGL . K 5 PLM A 1 901 901 PLM PLM . L 4 BGL B 1 805 805 BGL BGL . M 4 BGL B 1 806 806 BGL BGL . N 5 PLM B 1 902 902 PLM PLM . O 6 HOH A 1 902 1 HOH HOH . O 6 HOH A 2 903 4 HOH HOH . O 6 HOH A 3 904 5 HOH HOH . O 6 HOH A 4 905 8 HOH HOH . O 6 HOH A 5 906 9 HOH HOH . P 6 HOH B 1 903 2 HOH HOH . P 6 HOH B 2 904 3 HOH HOH . P 6 HOH B 3 905 6 HOH HOH . P 6 HOH B 4 906 7 HOH HOH . P 6 HOH B 5 907 10 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PLM . . . K 5 22.537 -15.451 -34.422 1 53.89 ? C1 PLM 901 A 1 HETATM 2 O O2 PLM . . . K 5 21.805 -15.9 -35.338 1 92.63 ? O2 PLM 901 A 1 HETATM 3 C C2 PLM . . . K 5 24.001 -15.835 -34.364 1 107.49 ? C2 PLM 901 A 1 HETATM 4 C C3 PLM . . . K 5 24.168 -17.34 -34.592 1 155.06 ? C3 PLM 901 A 1 HETATM 5 C C4 PLM . . . K 5 23.883 -17.772 -36.033 1 87.99 ? C4 PLM 901 A 1 HETATM 6 C C5 PLM . . . K 5 22.97 -18.997 -36.089 1 87.27 ? C5 PLM 901 A 1 HETATM 7 C C6 PLM . . . K 5 23.405 -20.004 -37.155 1 107.18 ? C6 PLM 901 A 1 HETATM 8 C C7 PLM . . . K 5 23.959 -21.277 -36.516 1 60.47 ? C7 PLM 901 A 1 HETATM 9 C C8 PLM . . . K 5 23.089 -22.505 -36.781 1 98.46 ? C8 PLM 901 A 1 HETATM 10 C C9 PLM . . . K 5 23.9 -23.797 -36.66 1 52.1 ? C9 PLM 901 A 1 HETATM 11 C CA PLM . . . K 5 23.029 -25.046 -36.797 1 89.38 ? CA PLM 901 A 1 HETATM 12 C CB PLM . . . K 5 23.814 -26.214 -37.396 1 68.1 ? CB PLM 901 A 1 HETATM 13 C CC PLM . . . K 5 24.072 -27.302 -36.356 1 99.38 ? CC PLM 901 A 1 HETATM 14 C CD PLM . . . K 5 24.887 -28.462 -36.927 1 77.09 ? CD PLM 901 A 1 HETATM 15 C CE PLM . . . K 5 24.829 -29.68 -36.007 1 63.88 ? CE PLM 901 A 1 HETATM 16 C CF PLM . . . K 5 26.02 -30.601 -36.24 1 89.98 ? CF PLM 901 A 1 HETATM 17 C CG PLM . . . K 5 25.55 -31.961 -36.744 1 50.05 ? CG PLM 901 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 475 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 17 #