data_3CAQ # _model_server_result.job_id 9RwuhvHdoKK9R9VVzoHBzw _model_server_result.datetime_utc '2024-11-08 09:42:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3caq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":330}' # _entry.id 3CAQ # _exptl.entry_id 3CAQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3CAQ _cell.length_a 50.38 _cell.length_b 110.63 _cell.length_c 130.65 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3CAQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,L 1 1 B,H,I,J,K,M 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 K N N # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 255 n n C1 H11 MPD sing 256 n n C1 H12 MPD sing 257 n n C1 H13 MPD sing 258 n n C2 O2 MPD sing 259 n n C2 CM MPD sing 260 n n C2 C3 MPD sing 261 n n O2 HO2 MPD sing 262 n n CM HM1 MPD sing 263 n n CM HM2 MPD sing 264 n n CM HM3 MPD sing 265 n n C3 C4 MPD sing 266 n n C3 H31 MPD sing 267 n n C3 H32 MPD sing 268 n n C4 O4 MPD sing 269 n n C4 C5 MPD sing 270 n n C4 H4 MPD sing 271 n n O4 HO4 MPD sing 272 n n C5 H51 MPD sing 273 n n C5 H52 MPD sing 274 n n C5 H53 MPD sing 275 n n # _atom_sites.entry_id 3CAQ _atom_sites.fract_transf_matrix[1][1] 0.019849 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009039 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007654 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NDP A 1 327 327 NDP NDP . D 3 BME A 1 328 328 BME BME . E 4 EDO A 1 329 329 EDO EDO . F 4 EDO A 1 330 330 EDO EDO . G 5 MPD A 1 331 331 MPD MPD . H 2 NDP B 1 327 327 NDP NDP . I 3 BME B 1 328 328 BME BME . J 4 EDO B 1 329 329 EDO EDO . K 5 MPD B 1 330 330 MPD MPD . L 6 HOH A 1 332 332 HOH HOH . L 6 HOH A 2 333 333 HOH HOH . L 6 HOH A 3 334 334 HOH HOH . L 6 HOH A 4 335 335 HOH HOH . L 6 HOH A 5 336 336 HOH HOH . L 6 HOH A 6 337 337 HOH HOH . L 6 HOH A 7 338 338 HOH HOH . L 6 HOH A 8 339 339 HOH HOH . L 6 HOH A 9 340 340 HOH HOH . L 6 HOH A 10 341 341 HOH HOH . L 6 HOH A 11 342 342 HOH HOH . L 6 HOH A 12 343 343 HOH HOH . L 6 HOH A 13 344 344 HOH HOH . L 6 HOH A 14 345 345 HOH HOH . L 6 HOH A 15 346 346 HOH HOH . L 6 HOH A 16 347 347 HOH HOH . L 6 HOH A 17 348 348 HOH HOH . L 6 HOH A 18 349 349 HOH HOH . L 6 HOH A 19 350 350 HOH HOH . L 6 HOH A 20 351 351 HOH HOH . L 6 HOH A 21 352 352 HOH HOH . L 6 HOH A 22 353 353 HOH HOH . L 6 HOH A 23 354 354 HOH HOH . L 6 HOH A 24 355 355 HOH HOH . L 6 HOH A 25 356 356 HOH HOH . L 6 HOH A 26 357 357 HOH HOH . L 6 HOH A 27 358 358 HOH HOH . L 6 HOH A 28 359 359 HOH HOH . L 6 HOH A 29 360 360 HOH HOH . L 6 HOH A 30 361 361 HOH HOH . L 6 HOH A 31 362 362 HOH HOH . L 6 HOH A 32 363 363 HOH HOH . L 6 HOH A 33 364 364 HOH HOH . L 6 HOH A 34 365 365 HOH HOH . L 6 HOH A 35 366 366 HOH HOH . L 6 HOH A 36 367 367 HOH HOH . L 6 HOH A 37 368 368 HOH HOH . L 6 HOH A 38 369 369 HOH HOH . L 6 HOH A 39 370 370 HOH HOH . L 6 HOH A 40 371 371 HOH HOH . L 6 HOH A 41 372 372 HOH HOH . L 6 HOH A 42 373 373 HOH HOH . L 6 HOH A 43 374 374 HOH HOH . L 6 HOH A 44 375 375 HOH HOH . L 6 HOH A 45 376 376 HOH HOH . L 6 HOH A 46 377 377 HOH HOH . L 6 HOH A 47 378 378 HOH HOH . L 6 HOH A 48 379 379 HOH HOH . L 6 HOH A 49 380 380 HOH HOH . L 6 HOH A 50 381 381 HOH HOH . L 6 HOH A 51 382 382 HOH HOH . L 6 HOH A 52 383 383 HOH HOH . L 6 HOH A 53 384 384 HOH HOH . L 6 HOH A 54 385 385 HOH HOH . L 6 HOH A 55 386 386 HOH HOH . L 6 HOH A 56 387 387 HOH HOH . L 6 HOH A 57 388 388 HOH HOH . L 6 HOH A 58 389 389 HOH HOH . L 6 HOH A 59 390 390 HOH HOH . L 6 HOH A 60 391 391 HOH HOH . L 6 HOH A 61 392 392 HOH HOH . L 6 HOH A 62 393 393 HOH HOH . L 6 HOH A 63 394 394 HOH HOH . L 6 HOH A 64 395 395 HOH HOH . L 6 HOH A 65 396 396 HOH HOH . L 6 HOH A 66 397 397 HOH HOH . L 6 HOH A 67 398 398 HOH HOH . L 6 HOH A 68 399 399 HOH HOH . L 6 HOH A 69 400 400 HOH HOH . L 6 HOH A 70 401 401 HOH HOH . L 6 HOH A 71 402 402 HOH HOH . L 6 HOH A 72 403 403 HOH HOH . L 6 HOH A 73 404 404 HOH HOH . L 6 HOH A 74 405 405 HOH HOH . L 6 HOH A 75 406 406 HOH HOH . L 6 HOH A 76 407 407 HOH HOH . L 6 HOH A 77 408 408 HOH HOH . L 6 HOH A 78 409 409 HOH HOH . L 6 HOH A 79 410 410 HOH HOH . L 6 HOH A 80 411 411 HOH HOH . L 6 HOH A 81 412 412 HOH HOH . L 6 HOH A 82 413 413 HOH HOH . L 6 HOH A 83 414 414 HOH HOH . L 6 HOH A 84 415 415 HOH HOH . L 6 HOH A 85 416 416 HOH HOH . L 6 HOH A 86 417 417 HOH HOH . L 6 HOH A 87 418 418 HOH HOH . L 6 HOH A 88 419 419 HOH HOH . L 6 HOH A 89 420 420 HOH HOH . L 6 HOH A 90 421 421 HOH HOH . L 6 HOH A 91 422 422 HOH HOH . L 6 HOH A 92 423 423 HOH HOH . L 6 HOH A 93 424 424 HOH HOH . L 6 HOH A 94 425 425 HOH HOH . L 6 HOH A 95 426 426 HOH HOH . L 6 HOH A 96 427 427 HOH HOH . L 6 HOH A 97 428 428 HOH HOH . L 6 HOH A 98 429 429 HOH HOH . L 6 HOH A 99 430 430 HOH HOH . L 6 HOH A 100 431 431 HOH HOH . L 6 HOH A 101 432 432 HOH HOH . L 6 HOH A 102 433 433 HOH HOH . L 6 HOH A 103 434 434 HOH HOH . L 6 HOH A 104 435 435 HOH HOH . L 6 HOH A 105 436 436 HOH HOH . L 6 HOH A 106 437 437 HOH HOH . L 6 HOH A 107 438 438 HOH HOH . L 6 HOH A 108 439 439 HOH HOH . L 6 HOH A 109 440 440 HOH HOH . L 6 HOH A 110 441 441 HOH HOH . L 6 HOH A 111 442 442 HOH HOH . L 6 HOH A 112 443 443 HOH HOH . L 6 HOH A 113 444 444 HOH HOH . L 6 HOH A 114 445 445 HOH HOH . L 6 HOH A 115 446 446 HOH HOH . L 6 HOH A 116 447 447 HOH HOH . L 6 HOH A 117 448 448 HOH HOH . L 6 HOH A 118 449 449 HOH HOH . L 6 HOH A 119 450 450 HOH HOH . L 6 HOH A 120 451 451 HOH HOH . L 6 HOH A 121 452 452 HOH HOH . L 6 HOH A 122 453 453 HOH HOH . L 6 HOH A 123 454 454 HOH HOH . L 6 HOH A 124 455 455 HOH HOH . L 6 HOH A 125 456 456 HOH HOH . L 6 HOH A 126 457 457 HOH HOH . L 6 HOH A 127 458 458 HOH HOH . L 6 HOH A 128 459 459 HOH HOH . L 6 HOH A 129 460 460 HOH HOH . L 6 HOH A 130 461 461 HOH HOH . L 6 HOH A 131 462 462 HOH HOH . L 6 HOH A 132 463 463 HOH HOH . L 6 HOH A 133 464 464 HOH HOH . L 6 HOH A 134 465 465 HOH HOH . L 6 HOH A 135 466 466 HOH HOH . L 6 HOH A 136 467 467 HOH HOH . L 6 HOH A 137 468 468 HOH HOH . L 6 HOH A 138 469 469 HOH HOH . L 6 HOH A 139 470 470 HOH HOH . L 6 HOH A 140 471 471 HOH HOH . L 6 HOH A 141 472 472 HOH HOH . L 6 HOH A 142 473 473 HOH HOH . L 6 HOH A 143 474 474 HOH HOH . L 6 HOH A 144 475 475 HOH HOH . L 6 HOH A 145 476 476 HOH HOH . L 6 HOH A 146 477 477 HOH HOH . L 6 HOH A 147 478 478 HOH HOH . L 6 HOH A 148 479 479 HOH HOH . L 6 HOH A 149 480 480 HOH HOH . L 6 HOH A 150 481 481 HOH HOH . L 6 HOH A 151 482 482 HOH HOH . L 6 HOH A 152 483 483 HOH HOH . L 6 HOH A 153 484 484 HOH HOH . L 6 HOH A 154 485 485 HOH HOH . L 6 HOH A 155 486 486 HOH HOH . L 6 HOH A 156 487 487 HOH HOH . L 6 HOH A 157 488 488 HOH HOH . L 6 HOH A 158 489 489 HOH HOH . L 6 HOH A 159 490 490 HOH HOH . L 6 HOH A 160 491 491 HOH HOH . L 6 HOH A 161 492 492 HOH HOH . L 6 HOH A 162 493 493 HOH HOH . L 6 HOH A 163 494 494 HOH HOH . L 6 HOH A 164 495 495 HOH HOH . L 6 HOH A 165 496 496 HOH HOH . L 6 HOH A 166 497 497 HOH HOH . L 6 HOH A 167 498 498 HOH HOH . L 6 HOH A 168 499 499 HOH HOH . L 6 HOH A 169 500 500 HOH HOH . L 6 HOH A 170 501 501 HOH HOH . L 6 HOH A 171 502 502 HOH HOH . L 6 HOH A 172 503 503 HOH HOH . L 6 HOH A 173 504 504 HOH HOH . M 6 HOH B 1 331 331 HOH HOH . M 6 HOH B 2 332 332 HOH HOH . M 6 HOH B 3 333 333 HOH HOH . M 6 HOH B 4 334 334 HOH HOH . M 6 HOH B 5 335 335 HOH HOH . M 6 HOH B 6 336 336 HOH HOH . M 6 HOH B 7 337 337 HOH HOH . M 6 HOH B 8 338 338 HOH HOH . M 6 HOH B 9 339 339 HOH HOH . M 6 HOH B 10 340 340 HOH HOH . M 6 HOH B 11 341 341 HOH HOH . M 6 HOH B 12 342 342 HOH HOH . M 6 HOH B 13 343 343 HOH HOH . M 6 HOH B 14 344 344 HOH HOH . M 6 HOH B 15 345 345 HOH HOH . M 6 HOH B 16 346 346 HOH HOH . M 6 HOH B 17 347 347 HOH HOH . M 6 HOH B 18 348 348 HOH HOH . M 6 HOH B 19 349 349 HOH HOH . M 6 HOH B 20 350 350 HOH HOH . M 6 HOH B 21 351 351 HOH HOH . M 6 HOH B 22 352 352 HOH HOH . M 6 HOH B 23 353 353 HOH HOH . M 6 HOH B 24 354 354 HOH HOH . M 6 HOH B 25 355 355 HOH HOH . M 6 HOH B 26 356 356 HOH HOH . M 6 HOH B 27 357 357 HOH HOH . M 6 HOH B 28 358 358 HOH HOH . M 6 HOH B 29 359 359 HOH HOH . M 6 HOH B 30 360 360 HOH HOH . M 6 HOH B 31 361 361 HOH HOH . M 6 HOH B 32 362 362 HOH HOH . M 6 HOH B 33 363 363 HOH HOH . M 6 HOH B 34 364 364 HOH HOH . M 6 HOH B 35 365 365 HOH HOH . M 6 HOH B 36 366 366 HOH HOH . M 6 HOH B 37 367 367 HOH HOH . M 6 HOH B 38 368 368 HOH HOH . M 6 HOH B 39 369 369 HOH HOH . M 6 HOH B 40 370 370 HOH HOH . M 6 HOH B 41 371 371 HOH HOH . M 6 HOH B 42 372 372 HOH HOH . M 6 HOH B 43 373 373 HOH HOH . M 6 HOH B 44 374 374 HOH HOH . M 6 HOH B 45 375 375 HOH HOH . M 6 HOH B 46 376 376 HOH HOH . M 6 HOH B 47 377 377 HOH HOH . M 6 HOH B 48 378 378 HOH HOH . M 6 HOH B 49 379 379 HOH HOH . M 6 HOH B 50 380 380 HOH HOH . M 6 HOH B 51 381 381 HOH HOH . M 6 HOH B 52 382 382 HOH HOH . M 6 HOH B 53 383 383 HOH HOH . M 6 HOH B 54 384 384 HOH HOH . M 6 HOH B 55 385 385 HOH HOH . M 6 HOH B 56 386 386 HOH HOH . M 6 HOH B 57 387 387 HOH HOH . M 6 HOH B 58 388 388 HOH HOH . M 6 HOH B 59 389 389 HOH HOH . M 6 HOH B 60 390 390 HOH HOH . M 6 HOH B 61 391 391 HOH HOH . M 6 HOH B 62 392 392 HOH HOH . M 6 HOH B 63 393 393 HOH HOH . M 6 HOH B 64 394 394 HOH HOH . M 6 HOH B 65 395 395 HOH HOH . M 6 HOH B 66 396 396 HOH HOH . M 6 HOH B 67 397 397 HOH HOH . M 6 HOH B 68 398 398 HOH HOH . M 6 HOH B 69 399 399 HOH HOH . M 6 HOH B 70 400 400 HOH HOH . M 6 HOH B 71 401 401 HOH HOH . M 6 HOH B 72 402 402 HOH HOH . M 6 HOH B 73 403 403 HOH HOH . M 6 HOH B 74 404 404 HOH HOH . M 6 HOH B 75 405 405 HOH HOH . M 6 HOH B 76 406 406 HOH HOH . M 6 HOH B 77 407 407 HOH HOH . M 6 HOH B 78 408 408 HOH HOH . M 6 HOH B 79 409 409 HOH HOH . M 6 HOH B 80 410 410 HOH HOH . M 6 HOH B 81 411 411 HOH HOH . M 6 HOH B 82 412 412 HOH HOH . M 6 HOH B 83 413 413 HOH HOH . M 6 HOH B 84 414 414 HOH HOH . M 6 HOH B 85 415 415 HOH HOH . M 6 HOH B 86 416 416 HOH HOH . M 6 HOH B 87 417 417 HOH HOH . M 6 HOH B 88 418 418 HOH HOH . M 6 HOH B 89 419 419 HOH HOH . M 6 HOH B 90 420 420 HOH HOH . M 6 HOH B 91 421 421 HOH HOH . M 6 HOH B 92 422 422 HOH HOH . M 6 HOH B 93 423 423 HOH HOH . M 6 HOH B 94 424 424 HOH HOH . M 6 HOH B 95 425 425 HOH HOH . M 6 HOH B 96 426 426 HOH HOH . M 6 HOH B 97 427 427 HOH HOH . M 6 HOH B 98 428 428 HOH HOH . M 6 HOH B 99 429 429 HOH HOH . M 6 HOH B 100 430 430 HOH HOH . M 6 HOH B 101 431 431 HOH HOH . M 6 HOH B 102 432 432 HOH HOH . M 6 HOH B 103 433 433 HOH HOH . M 6 HOH B 104 434 434 HOH HOH . M 6 HOH B 105 435 435 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . K 5 -11.959 -40.149 61.375 1 45.22 ? C1 MPD 330 B 1 HETATM 2 C C2 MPD . . . K 5 -13.441 -39.754 61.457 1 45.05 ? C2 MPD 330 B 1 HETATM 3 O O2 MPD . . . K 5 -14.039 -40.339 62.617 1 43.28 ? O2 MPD 330 B 1 HETATM 4 C CM MPD . . . K 5 -13.548 -38.241 61.548 1 44.64 ? CM MPD 330 B 1 HETATM 5 C C3 MPD . . . K 5 -14.195 -40.225 60.194 1 45.24 ? C3 MPD 330 B 1 HETATM 6 C C4 MPD . . . K 5 -14.13 -41.79 60.007 1 46.02 ? C4 MPD 330 B 1 HETATM 7 O O4 MPD . . . K 5 -14.693 -42.467 61.132 1 45.53 ? O4 MPD 330 B 1 HETATM 8 C C5 MPD . . . K 5 -14.914 -42.092 58.735 1 47.23 ? C5 MPD 330 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 19 _model_server_stats.element_count 8 #