data_3CBG # _model_server_result.job_id nSATAAwFzIPI1KAIXL_Vsw _model_server_result.datetime_utc '2025-03-09 04:29:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3cbg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":501}' # _entry.id 3CBG # _exptl.entry_id 3CBG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 194.184 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-(4-HYDROXY-3-METHOXYPHENYL)-2-PROPENOIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3CBG _cell.length_a 57.622 _cell.length_b 57.622 _cell.length_c 119.834 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3CBG _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_465 y-1,x+1,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 -86.433 49.902116 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 155 A ASP 143 1_555 B MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc2 A OD2 ASP 181 A ASP 169 1_555 B MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? metalc ? metalc3 A OD1 ASN 182 A ASN 170 1_555 B MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? metalc ? metalc4 B MG MG . A MG 401 1_555 D O4 FER . A FER 501 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.434 ? metalc ? metalc5 B MG MG . A MG 401 1_555 E O3 4FE . A 4FE 502 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.196 ? metalc ? metalc6 B MG MG . A MG 401 1_555 E O4 4FE . A 4FE 502 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.278 ? metalc ? metalc7 B MG MG . A MG 401 1_555 F O HOH . A HOH 1128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? # _chem_comp.formula 'C10 H10 O4' _chem_comp.formula_weight 194.184 _chem_comp.id FER _chem_comp.mon_nstd_flag . _chem_comp.name '3-(4-HYDROXY-3-METHOXYPHENYL)-2-PROPENOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'FERULIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C4 C5 FER doub 107 n y C4 C3 FER sing 108 n y C4 O4 FER sing 109 n n C5 C6 FER sing 110 n y C5 H5 FER sing 111 n n C6 C1 FER doub 112 n y C6 H6 FER sing 113 n n C3 C2 FER doub 114 n y C3 O3 FER sing 115 n n C2 C1 FER sing 116 n y C2 H2 FER sing 117 n n C1 C7 FER sing 118 n n C10 O3 FER sing 119 n n C10 H101 FER sing 120 n n C10 H102 FER sing 121 n n C10 H103 FER sing 122 n n C7 C8 FER doub 123 e n C7 H7 FER sing 124 n n C8 C9 FER sing 125 n n C8 H8 FER sing 126 n n C9 O1 FER doub 127 n n C9 O2 FER sing 128 n n O2 HO2 FER sing 129 n n O4 HO4 FER sing 130 n n # _atom_sites.entry_id 3CBG _atom_sites.fract_transf_matrix[1][1] 0.017354 _atom_sites.fract_transf_matrix[1][2] 0.01002 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020039 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008345 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 401 401 MG MG . C 3 SAH A 1 301 301 SAH SAH . D 4 FER A 1 501 501 FER FER . E 5 4FE A 1 502 502 4FE 4FE . F 6 HOH A 1 1001 1001 HOH HOH . F 6 HOH A 2 1002 1002 HOH HOH . F 6 HOH A 3 1003 1003 HOH HOH . F 6 HOH A 4 1005 1005 HOH HOH . F 6 HOH A 5 1007 1007 HOH HOH . F 6 HOH A 6 1008 1008 HOH HOH . F 6 HOH A 7 1009 1009 HOH HOH . F 6 HOH A 8 1012 1012 HOH HOH . F 6 HOH A 9 1013 1013 HOH HOH . F 6 HOH A 10 1014 1014 HOH HOH . F 6 HOH A 11 1015 1015 HOH HOH . F 6 HOH A 12 1016 1016 HOH HOH . F 6 HOH A 13 1018 1018 HOH HOH . F 6 HOH A 14 1021 1021 HOH HOH . F 6 HOH A 15 1022 1022 HOH HOH . F 6 HOH A 16 1023 1023 HOH HOH . F 6 HOH A 17 1024 1024 HOH HOH . F 6 HOH A 18 1025 1025 HOH HOH . F 6 HOH A 19 1027 1027 HOH HOH . F 6 HOH A 20 1030 1030 HOH HOH . F 6 HOH A 21 1032 1032 HOH HOH . F 6 HOH A 22 1033 1033 HOH HOH . F 6 HOH A 23 1042 1042 HOH HOH . F 6 HOH A 24 1045 1045 HOH HOH . F 6 HOH A 25 1048 1048 HOH HOH . F 6 HOH A 26 1050 1050 HOH HOH . F 6 HOH A 27 1051 1051 HOH HOH . F 6 HOH A 28 1056 1056 HOH HOH . F 6 HOH A 29 1057 1057 HOH HOH . F 6 HOH A 30 1061 1061 HOH HOH . F 6 HOH A 31 1063 1063 HOH HOH . F 6 HOH A 32 1065 1065 HOH HOH . F 6 HOH A 33 1067 1067 HOH HOH . F 6 HOH A 34 1068 1068 HOH HOH . F 6 HOH A 35 1079 1079 HOH HOH . F 6 HOH A 36 1081 1081 HOH HOH . F 6 HOH A 37 1084 1084 HOH HOH . F 6 HOH A 38 1101 1101 HOH HOH . F 6 HOH A 39 1114 1114 HOH HOH . F 6 HOH A 40 1116 1116 HOH HOH . F 6 HOH A 41 1118 1118 HOH HOH . F 6 HOH A 42 1127 1127 HOH HOH . F 6 HOH A 43 1128 1128 HOH HOH . F 6 HOH A 44 1129 1129 HOH HOH . F 6 HOH A 45 1130 1130 HOH HOH . F 6 HOH A 46 1132 1132 HOH HOH . F 6 HOH A 47 1135 1135 HOH HOH . F 6 HOH A 48 1137 1137 HOH HOH . F 6 HOH A 49 1138 1138 HOH HOH . F 6 HOH A 50 1139 1139 HOH HOH . F 6 HOH A 51 1140 1140 HOH HOH . F 6 HOH A 52 1141 1141 HOH HOH . F 6 HOH A 53 1142 1142 HOH HOH . F 6 HOH A 54 1143 1143 HOH HOH . F 6 HOH A 55 1144 1144 HOH HOH . F 6 HOH A 56 1146 1146 HOH HOH . F 6 HOH A 57 1148 1148 HOH HOH . F 6 HOH A 58 1149 1149 HOH HOH . F 6 HOH A 59 1150 1150 HOH HOH . F 6 HOH A 60 1151 1151 HOH HOH . F 6 HOH A 61 1152 1152 HOH HOH . F 6 HOH A 62 1153 1153 HOH HOH . F 6 HOH A 63 1154 1154 HOH HOH . F 6 HOH A 64 1155 1155 HOH HOH . F 6 HOH A 65 1156 1156 HOH HOH . F 6 HOH A 66 1157 1157 HOH HOH . F 6 HOH A 67 1158 1158 HOH HOH . F 6 HOH A 68 1160 1160 HOH HOH . F 6 HOH A 69 1161 1161 HOH HOH . F 6 HOH A 70 1162 1162 HOH HOH . F 6 HOH A 71 1163 1163 HOH HOH . F 6 HOH A 72 1165 1165 HOH HOH . F 6 HOH A 73 1166 1166 HOH HOH . F 6 HOH A 74 1167 1167 HOH HOH . F 6 HOH A 75 1169 1169 HOH HOH . F 6 HOH A 76 1173 1173 HOH HOH . F 6 HOH A 77 1174 1174 HOH HOH . F 6 HOH A 78 1175 1175 HOH HOH . F 6 HOH A 79 1176 1176 HOH HOH . F 6 HOH A 80 1177 1177 HOH HOH . F 6 HOH A 81 1178 1178 HOH HOH . F 6 HOH A 82 1179 1179 HOH HOH . F 6 HOH A 83 1180 1180 HOH HOH . F 6 HOH A 84 1181 1181 HOH HOH . F 6 HOH A 85 1184 1184 HOH HOH . F 6 HOH A 86 1185 1185 HOH HOH . F 6 HOH A 87 1186 1186 HOH HOH . F 6 HOH A 88 1187 1187 HOH HOH . F 6 HOH A 89 1188 1188 HOH HOH . F 6 HOH A 90 1190 1190 HOH HOH . F 6 HOH A 91 1192 1192 HOH HOH . F 6 HOH A 92 1193 1193 HOH HOH . F 6 HOH A 93 1194 1194 HOH HOH . F 6 HOH A 94 1195 1195 HOH HOH . F 6 HOH A 95 1196 1196 HOH HOH . F 6 HOH A 96 1198 1198 HOH HOH . F 6 HOH A 97 1199 1199 HOH HOH . F 6 HOH A 98 1200 1200 HOH HOH . F 6 HOH A 99 1204 1204 HOH HOH . F 6 HOH A 100 1205 1205 HOH HOH . F 6 HOH A 101 1206 1206 HOH HOH . F 6 HOH A 102 1207 1207 HOH HOH . F 6 HOH A 103 1208 1208 HOH HOH . F 6 HOH A 104 1209 1209 HOH HOH . F 6 HOH A 105 1210 1210 HOH HOH . F 6 HOH A 106 1211 1211 HOH HOH . F 6 HOH A 107 1212 1212 HOH HOH . F 6 HOH A 108 1213 1213 HOH HOH . F 6 HOH A 109 1243 1243 HOH HOH . F 6 HOH A 110 1244 1244 HOH HOH . F 6 HOH A 111 1245 1245 HOH HOH . F 6 HOH A 112 1246 1246 HOH HOH . F 6 HOH A 113 1247 1247 HOH HOH . F 6 HOH A 114 1248 1248 HOH HOH . F 6 HOH A 115 1249 1249 HOH HOH . F 6 HOH A 116 1250 1250 HOH HOH . F 6 HOH A 117 1251 1251 HOH HOH . F 6 HOH A 118 1252 1252 HOH HOH . F 6 HOH A 119 1255 1255 HOH HOH . F 6 HOH A 120 1256 1256 HOH HOH . F 6 HOH A 121 1257 1257 HOH HOH . F 6 HOH A 122 1258 1258 HOH HOH . F 6 HOH A 123 1259 1259 HOH HOH . F 6 HOH A 124 1260 1260 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 FER . A . D 4 -35.174 4.811 4.534 0.5 56.92 ? C4 FER 501 A 1 HETATM 2 C C5 FER . A . D 4 -36.114 4.486 3.563 0.5 57.99 ? C5 FER 501 A 1 HETATM 3 C C6 FER . A . D 4 -36.536 3.17 3.416 0.5 58.41 ? C6 FER 501 A 1 HETATM 4 C C3 FER . A . D 4 -34.656 3.82 5.359 0.5 56.55 ? C3 FER 501 A 1 HETATM 5 C C2 FER . A . D 4 -35.079 2.504 5.213 0.5 57.51 ? C2 FER 501 A 1 HETATM 6 C C1 FER . A . D 4 -36.018 2.178 4.24 0.5 58.67 ? C1 FER 501 A 1 HETATM 7 C C10 FER . A . D 4 -32.869 3.021 6.53 0.5 54.03 ? C10 FER 501 A 1 HETATM 8 C C7 FER . A . D 4 -36.434 0.861 4.09 0.5 59.96 ? C7 FER 501 A 1 HETATM 9 C C8 FER . A . D 4 -37.369 0.531 3.115 0.5 61.28 ? C8 FER 501 A 1 HETATM 10 C C9 FER . A . D 4 -37.782 -0.788 2.97 0.5 62.1 ? C9 FER 501 A 1 HETATM 11 O O1 FER . A . D 4 -37.402 -1.615 3.827 0.5 61.89 ? O1 FER 501 A 1 HETATM 12 O O2 FER . A . D 4 -38.498 -1.074 1.986 0.5 62.01 ? O2 FER 501 A 1 HETATM 13 O O4 FER . A . D 4 -34.757 6.098 4.672 0.5 56.31 ? O4 FER 501 A 1 HETATM 14 O O3 FER . A . D 4 -33.733 4.138 6.306 0.5 54.96 ? O3 FER 501 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #