data_3CBM # _model_server_result.job_id lTGZnOBwHRV4auETJW9z1A _model_server_result.datetime_utc '2024-12-22 06:25:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3cbm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":397}' # _entry.id 3CBM # _exptl.entry_id 3CBM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description BETA-MERCAPTOETHANOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3CBM _cell.length_a 102.338 _cell.length_b 38.902 _cell.length_c 66.812 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3CBM _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 9 A CYS 119 1_555 E S2 BME . A BME 396 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.556 ? covale ? covale2 A SG CYS 90 A CYS 200 1_555 D S2 BME . A BME 395 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? covale ? covale3 A SG CYS 178 A CYS 288 1_555 F S2 BME . A BME 397 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? covale ? covale4 B C SER 4 B SER 301 1_555 B N MLZ 5 B MLZ 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 sing covale ? covale5 B C MLZ 5 B MLZ 302 1_555 B N LYS 6 B LYS 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 sing # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id BME _chem_comp.mon_nstd_flag . _chem_comp.name BETA-MERCAPTOETHANOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 BME sing 70 n n C1 O1 BME sing 71 n n C1 H11 BME sing 72 n n C1 H12 BME sing 73 n n C2 S2 BME sing 74 n n C2 H21 BME sing 75 n n C2 H22 BME sing 76 n n O1 HO1 BME sing 77 n n S2 HS2 BME sing 78 n n # _atom_sites.entry_id 3CBM _atom_sites.fract_transf_matrix[1][1] 0.009772 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025706 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014967 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SAH A 1 1 1 SAH SAH . D 4 BME A 1 395 395 BME BME . E 4 BME A 1 396 396 BME BME . F 4 BME A 1 397 397 BME BME . G 5 HOH A 1 398 1 HOH TIP . G 5 HOH A 2 399 2 HOH TIP . G 5 HOH A 3 400 3 HOH TIP . G 5 HOH A 4 401 4 HOH TIP . G 5 HOH A 5 402 5 HOH TIP . G 5 HOH A 6 403 6 HOH TIP . G 5 HOH A 7 404 7 HOH TIP . G 5 HOH A 8 405 8 HOH TIP . G 5 HOH A 9 406 9 HOH TIP . G 5 HOH A 10 407 10 HOH TIP . G 5 HOH A 11 408 11 HOH TIP . G 5 HOH A 12 409 12 HOH TIP . G 5 HOH A 13 410 13 HOH TIP . G 5 HOH A 14 411 14 HOH TIP . G 5 HOH A 15 412 15 HOH TIP . G 5 HOH A 16 413 16 HOH TIP . G 5 HOH A 17 414 17 HOH TIP . G 5 HOH A 18 415 18 HOH TIP . G 5 HOH A 19 416 19 HOH TIP . G 5 HOH A 20 417 20 HOH TIP . G 5 HOH A 21 418 21 HOH TIP . G 5 HOH A 22 419 22 HOH TIP . G 5 HOH A 23 420 23 HOH TIP . G 5 HOH A 24 421 24 HOH TIP . G 5 HOH A 25 422 25 HOH TIP . G 5 HOH A 26 423 26 HOH TIP . G 5 HOH A 27 424 27 HOH TIP . G 5 HOH A 28 425 28 HOH TIP . G 5 HOH A 29 426 29 HOH TIP . G 5 HOH A 30 427 30 HOH TIP . G 5 HOH A 31 428 31 HOH TIP . G 5 HOH A 32 429 32 HOH TIP . G 5 HOH A 33 430 33 HOH TIP . G 5 HOH A 34 431 34 HOH TIP . G 5 HOH A 35 432 35 HOH TIP . G 5 HOH A 36 433 36 HOH TIP . G 5 HOH A 37 434 37 HOH TIP . G 5 HOH A 38 435 38 HOH TIP . G 5 HOH A 39 436 39 HOH TIP . G 5 HOH A 40 437 40 HOH TIP . G 5 HOH A 41 438 41 HOH TIP . G 5 HOH A 42 439 42 HOH TIP . G 5 HOH A 43 440 43 HOH TIP . G 5 HOH A 44 441 44 HOH TIP . G 5 HOH A 45 442 45 HOH TIP . G 5 HOH A 46 443 46 HOH TIP . G 5 HOH A 47 444 47 HOH TIP . G 5 HOH A 48 445 48 HOH TIP . G 5 HOH A 49 446 49 HOH TIP . G 5 HOH A 50 447 50 HOH TIP . G 5 HOH A 51 448 51 HOH TIP . G 5 HOH A 52 449 52 HOH TIP . G 5 HOH A 53 450 54 HOH TIP . G 5 HOH A 54 451 57 HOH TIP . G 5 HOH A 55 452 58 HOH TIP . G 5 HOH A 56 453 59 HOH TIP . G 5 HOH A 57 454 60 HOH TIP . G 5 HOH A 58 455 61 HOH TIP . G 5 HOH A 59 456 62 HOH TIP . G 5 HOH A 60 457 63 HOH TIP . G 5 HOH A 61 458 64 HOH TIP . G 5 HOH A 62 459 65 HOH TIP . G 5 HOH A 63 460 66 HOH TIP . G 5 HOH A 64 461 67 HOH TIP . G 5 HOH A 65 462 68 HOH TIP . G 5 HOH A 66 463 69 HOH TIP . G 5 HOH A 67 464 70 HOH TIP . G 5 HOH A 68 465 71 HOH TIP . G 5 HOH A 69 466 72 HOH TIP . G 5 HOH A 70 467 73 HOH TIP . G 5 HOH A 71 468 74 HOH TIP . G 5 HOH A 72 469 76 HOH TIP . G 5 HOH A 73 470 77 HOH TIP . G 5 HOH A 74 471 78 HOH TIP . G 5 HOH A 75 472 79 HOH TIP . G 5 HOH A 76 473 80 HOH TIP . G 5 HOH A 77 474 81 HOH TIP . G 5 HOH A 78 475 82 HOH TIP . G 5 HOH A 79 476 83 HOH TIP . G 5 HOH A 80 477 84 HOH TIP . G 5 HOH A 81 478 85 HOH TIP . G 5 HOH A 82 479 86 HOH TIP . G 5 HOH A 83 480 87 HOH TIP . G 5 HOH A 84 481 88 HOH TIP . G 5 HOH A 85 482 89 HOH TIP . G 5 HOH A 86 483 90 HOH TIP . G 5 HOH A 87 484 91 HOH TIP . G 5 HOH A 88 485 92 HOH TIP . G 5 HOH A 89 486 93 HOH TIP . G 5 HOH A 90 487 94 HOH TIP . G 5 HOH A 91 488 95 HOH TIP . G 5 HOH A 92 489 96 HOH TIP . G 5 HOH A 93 490 97 HOH TIP . G 5 HOH A 94 491 99 HOH TIP . G 5 HOH A 95 492 100 HOH TIP . G 5 HOH A 96 493 101 HOH TIP . G 5 HOH A 97 494 102 HOH TIP . G 5 HOH A 98 495 103 HOH TIP . G 5 HOH A 99 496 104 HOH TIP . G 5 HOH A 100 497 105 HOH TIP . G 5 HOH A 101 498 106 HOH TIP . G 5 HOH A 102 499 107 HOH TIP . G 5 HOH A 103 500 108 HOH TIP . G 5 HOH A 104 501 109 HOH TIP . G 5 HOH A 105 502 110 HOH TIP . G 5 HOH A 106 503 111 HOH TIP . G 5 HOH A 107 504 112 HOH TIP . G 5 HOH A 108 505 113 HOH TIP . G 5 HOH A 109 506 114 HOH TIP . G 5 HOH A 110 507 115 HOH TIP . G 5 HOH A 111 508 116 HOH TIP . G 5 HOH A 112 509 117 HOH TIP . G 5 HOH A 113 510 118 HOH TIP . G 5 HOH A 114 511 119 HOH TIP . G 5 HOH A 115 512 120 HOH TIP . G 5 HOH A 116 513 121 HOH TIP . G 5 HOH A 117 514 123 HOH TIP . G 5 HOH A 118 515 124 HOH TIP . G 5 HOH A 119 516 125 HOH TIP . G 5 HOH A 120 517 126 HOH TIP . G 5 HOH A 121 518 127 HOH TIP . G 5 HOH A 122 519 128 HOH TIP . G 5 HOH A 123 520 129 HOH TIP . G 5 HOH A 124 521 130 HOH TIP . G 5 HOH A 125 522 132 HOH TIP . G 5 HOH A 126 523 133 HOH TIP . G 5 HOH A 127 524 134 HOH TIP . G 5 HOH A 128 525 135 HOH TIP . G 5 HOH A 129 526 136 HOH TIP . G 5 HOH A 130 527 137 HOH TIP . G 5 HOH A 131 528 138 HOH TIP . G 5 HOH A 132 529 139 HOH TIP . G 5 HOH A 133 530 140 HOH TIP . G 5 HOH A 134 531 141 HOH TIP . G 5 HOH A 135 532 143 HOH TIP . G 5 HOH A 136 533 144 HOH TIP . G 5 HOH A 137 534 146 HOH TIP . G 5 HOH A 138 535 147 HOH TIP . G 5 HOH A 139 536 148 HOH TIP . G 5 HOH A 140 537 149 HOH TIP . G 5 HOH A 141 538 150 HOH TIP . G 5 HOH A 142 539 151 HOH TIP . G 5 HOH A 143 540 152 HOH TIP . G 5 HOH A 144 541 153 HOH TIP . G 5 HOH A 145 542 154 HOH TIP . G 5 HOH A 146 543 155 HOH TIP . G 5 HOH A 147 544 156 HOH TIP . G 5 HOH A 148 545 157 HOH TIP . G 5 HOH A 149 546 158 HOH TIP . G 5 HOH A 150 547 159 HOH TIP . G 5 HOH A 151 548 160 HOH TIP . G 5 HOH A 152 549 161 HOH TIP . G 5 HOH A 153 550 162 HOH TIP . G 5 HOH A 154 551 163 HOH TIP . H 5 HOH B 1 75 75 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BME . . . F 4 23.035 16.322 10.152 1 72.53 ? C1 BME 397 A 1 HETATM 2 C C2 BME . . . F 4 22.198 17.433 10.794 1 72.5 ? C2 BME 397 A 1 HETATM 3 O O1 BME . . . F 4 23.116 16.535 8.741 1 72.98 ? O1 BME 397 A 1 HETATM 4 S S2 BME . . . F 4 22.097 17.161 12.588 1 71.96 ? S2 BME 397 A 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 363 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #