data_3CBO # _model_server_result.job_id nJm1c0Vz3N2D0PvKbo1JAw _model_server_result.datetime_utc '2024-12-21 12:52:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3cbo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":396}' # _entry.id 3CBO # _exptl.entry_id 3CBO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description BETA-MERCAPTOETHANOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3CBO _cell.length_a 101.707 _cell.length_b 38.87 _cell.length_c 66.338 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3CBO _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H 1 1 A,B,C,D,E,F,G,H 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 101.707 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 9 A CYS 119 1_555 E S2 BME . A BME 396 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.024 ? covale ? covale2 A SG CYS 178 A CYS 288 1_555 F S2 BME . A BME 397 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.955 ? covale ? covale3 B C SER 4 B SER 301 1_555 B N MLZ 5 B MLZ 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale4 B C MLZ 5 B MLZ 302 1_555 B N LYS 6 B LYS 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id BME _chem_comp.mon_nstd_flag . _chem_comp.name BETA-MERCAPTOETHANOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 BME sing 70 n n C1 O1 BME sing 71 n n C1 H11 BME sing 72 n n C1 H12 BME sing 73 n n C2 S2 BME sing 74 n n C2 H21 BME sing 75 n n C2 H22 BME sing 76 n n O1 HO1 BME sing 77 n n S2 HS2 BME sing 78 n n # _atom_sites.entry_id 3CBO _atom_sites.fract_transf_matrix[1][1] 0.009832 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025727 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015074 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SAH A 1 1 1 SAH SAH . D 4 BME A 1 395 395 BME BME . E 4 BME A 1 396 396 BME BME . F 4 BME A 1 397 397 BME BME . G 5 GOL A 1 398 397 GOL GOL . H 6 HOH A 1 399 1 HOH TIP . H 6 HOH A 2 400 2 HOH TIP . H 6 HOH A 3 401 3 HOH TIP . H 6 HOH A 4 402 4 HOH TIP . H 6 HOH A 5 403 5 HOH TIP . H 6 HOH A 6 404 6 HOH TIP . H 6 HOH A 7 405 7 HOH TIP . H 6 HOH A 8 406 8 HOH TIP . H 6 HOH A 9 407 9 HOH TIP . H 6 HOH A 10 408 10 HOH TIP . H 6 HOH A 11 409 11 HOH TIP . H 6 HOH A 12 410 12 HOH TIP . H 6 HOH A 13 411 13 HOH TIP . H 6 HOH A 14 412 14 HOH TIP . H 6 HOH A 15 413 15 HOH TIP . H 6 HOH A 16 414 16 HOH TIP . H 6 HOH A 17 415 17 HOH TIP . H 6 HOH A 18 416 18 HOH TIP . H 6 HOH A 19 417 19 HOH TIP . H 6 HOH A 20 418 20 HOH TIP . H 6 HOH A 21 419 21 HOH TIP . H 6 HOH A 22 420 22 HOH TIP . H 6 HOH A 23 421 23 HOH TIP . H 6 HOH A 24 422 24 HOH TIP . H 6 HOH A 25 423 25 HOH TIP . H 6 HOH A 26 424 26 HOH TIP . H 6 HOH A 27 425 27 HOH TIP . H 6 HOH A 28 426 28 HOH TIP . H 6 HOH A 29 427 29 HOH TIP . H 6 HOH A 30 428 30 HOH TIP . H 6 HOH A 31 429 31 HOH TIP . H 6 HOH A 32 430 32 HOH TIP . H 6 HOH A 33 431 33 HOH TIP . H 6 HOH A 34 432 34 HOH TIP . H 6 HOH A 35 433 35 HOH TIP . H 6 HOH A 36 434 36 HOH TIP . H 6 HOH A 37 435 37 HOH TIP . H 6 HOH A 38 436 38 HOH TIP . H 6 HOH A 39 437 39 HOH TIP . H 6 HOH A 40 438 40 HOH TIP . H 6 HOH A 41 439 41 HOH TIP . H 6 HOH A 42 440 42 HOH TIP . H 6 HOH A 43 441 43 HOH TIP . H 6 HOH A 44 442 44 HOH TIP . H 6 HOH A 45 443 45 HOH TIP . H 6 HOH A 46 444 46 HOH TIP . H 6 HOH A 47 445 47 HOH TIP . H 6 HOH A 48 446 48 HOH TIP . H 6 HOH A 49 447 49 HOH TIP . H 6 HOH A 50 448 50 HOH TIP . H 6 HOH A 51 449 51 HOH TIP . H 6 HOH A 52 450 54 HOH TIP . H 6 HOH A 53 451 57 HOH TIP . H 6 HOH A 54 452 58 HOH TIP . H 6 HOH A 55 453 59 HOH TIP . H 6 HOH A 56 454 60 HOH TIP . H 6 HOH A 57 455 61 HOH TIP . H 6 HOH A 58 456 62 HOH TIP . H 6 HOH A 59 457 63 HOH TIP . H 6 HOH A 60 458 64 HOH TIP . H 6 HOH A 61 459 65 HOH TIP . H 6 HOH A 62 460 66 HOH TIP . H 6 HOH A 63 461 67 HOH TIP . H 6 HOH A 64 462 68 HOH TIP . H 6 HOH A 65 463 69 HOH TIP . H 6 HOH A 66 464 70 HOH TIP . H 6 HOH A 67 465 71 HOH TIP . H 6 HOH A 68 466 73 HOH TIP . H 6 HOH A 69 467 74 HOH TIP . H 6 HOH A 70 468 75 HOH TIP . H 6 HOH A 71 469 76 HOH TIP . H 6 HOH A 72 470 77 HOH TIP . H 6 HOH A 73 471 78 HOH TIP . H 6 HOH A 74 472 79 HOH TIP . H 6 HOH A 75 473 81 HOH TIP . H 6 HOH A 76 474 82 HOH TIP . H 6 HOH A 77 475 83 HOH TIP . H 6 HOH A 78 476 84 HOH TIP . H 6 HOH A 79 477 85 HOH TIP . H 6 HOH A 80 478 86 HOH TIP . H 6 HOH A 81 479 87 HOH TIP . H 6 HOH A 82 480 88 HOH TIP . H 6 HOH A 83 481 89 HOH TIP . H 6 HOH A 84 482 90 HOH TIP . H 6 HOH A 85 483 92 HOH TIP . H 6 HOH A 86 484 93 HOH TIP . H 6 HOH A 87 485 94 HOH TIP . H 6 HOH A 88 486 95 HOH TIP . H 6 HOH A 89 487 96 HOH TIP . H 6 HOH A 90 488 98 HOH TIP . H 6 HOH A 91 489 99 HOH TIP . H 6 HOH A 92 490 100 HOH TIP . H 6 HOH A 93 491 101 HOH TIP . H 6 HOH A 94 492 102 HOH TIP . H 6 HOH A 95 493 103 HOH TIP . H 6 HOH A 96 494 104 HOH TIP . H 6 HOH A 97 495 105 HOH TIP . H 6 HOH A 98 496 106 HOH TIP . H 6 HOH A 99 497 107 HOH TIP . H 6 HOH A 100 498 108 HOH TIP . H 6 HOH A 101 499 109 HOH TIP . H 6 HOH A 102 500 110 HOH TIP . H 6 HOH A 103 501 113 HOH TIP . H 6 HOH A 104 502 114 HOH TIP . H 6 HOH A 105 503 115 HOH TIP . H 6 HOH A 106 504 116 HOH TIP . H 6 HOH A 107 505 117 HOH TIP . H 6 HOH A 108 506 118 HOH TIP . H 6 HOH A 109 507 119 HOH TIP . H 6 HOH A 110 508 120 HOH TIP . H 6 HOH A 111 509 121 HOH TIP . H 6 HOH A 112 510 124 HOH TIP . H 6 HOH A 113 511 126 HOH TIP . H 6 HOH A 114 512 127 HOH TIP . H 6 HOH A 115 513 128 HOH TIP . H 6 HOH A 116 514 129 HOH TIP . H 6 HOH A 117 515 130 HOH TIP . H 6 HOH A 118 516 132 HOH TIP . H 6 HOH A 119 517 134 HOH TIP . H 6 HOH A 120 518 135 HOH TIP . H 6 HOH A 121 519 136 HOH TIP . H 6 HOH A 122 520 139 HOH TIP . H 6 HOH A 123 521 141 HOH TIP . H 6 HOH A 124 522 142 HOH TIP . H 6 HOH A 125 523 143 HOH TIP . H 6 HOH A 126 524 144 HOH TIP . H 6 HOH A 127 525 148 HOH TIP . H 6 HOH A 128 526 149 HOH TIP . H 6 HOH A 129 527 154 HOH TIP . H 6 HOH A 130 528 155 HOH TIP . H 6 HOH A 131 529 156 HOH TIP . H 6 HOH A 132 530 157 HOH TIP . H 6 HOH A 133 531 159 HOH TIP . H 6 HOH A 134 532 160 HOH TIP . H 6 HOH A 135 533 161 HOH TIP . H 6 HOH A 136 534 162 HOH TIP . H 6 HOH A 137 535 163 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BME . . . E 4 53.778 0.683 26.112 1 66.76 ? C1 BME 396 A 1 HETATM 2 C C2 BME . . . E 4 52.447 1.431 26.225 1 64.02 ? C2 BME 396 A 1 HETATM 3 O O1 BME . . . E 4 54.257 0.354 27.419 1 68.67 ? O1 BME 396 A 1 HETATM 4 S S2 BME . . . E 4 51.845 1.844 24.558 1 83.6 ? S2 BME 396 A 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #