data_3CBP # _model_server_result.job_id q5LTR-pzHHwIHc-T46G95w _model_server_result.datetime_utc '2024-12-18 04:49:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3cbp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":397}' # _entry.id 3CBP # _exptl.entry_id 3CBP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description BETA-MERCAPTOETHANOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3CBP _cell.length_a 102.042 _cell.length_b 38.786 _cell.length_c 66.571 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3CBP _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 9 A CYS 119 1_555 F S2 BME . A BME 397 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.653 ? covale ? covale2 A SG CYS 90 A CYS 200 1_555 E S2 BME . A BME 396 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.808 ? covale ? covale3 A SG CYS 178 A CYS 288 1_555 D S2 BME . A BME 395 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.039 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id BME _chem_comp.mon_nstd_flag . _chem_comp.name BETA-MERCAPTOETHANOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 BME sing 70 n n C1 O1 BME sing 71 n n C1 H11 BME sing 72 n n C1 H12 BME sing 73 n n C2 S2 BME sing 74 n n C2 H21 BME sing 75 n n C2 H22 BME sing 76 n n O1 HO1 BME sing 77 n n S2 HS2 BME sing 78 n n # _atom_sites.entry_id 3CBP _atom_sites.fract_transf_matrix[1][1] 0.0098 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025782 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015022 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SFG A 1 1501 1501 SFG SFG . D 4 BME A 1 395 395 BME BME . E 4 BME A 1 396 396 BME BME . F 4 BME A 1 397 397 BME BME . G 5 GOL A 1 1502 397 GOL GOL . H 6 HOH A 1 1503 1 HOH TIP . H 6 HOH A 2 1504 2 HOH TIP . H 6 HOH A 3 1505 3 HOH TIP . H 6 HOH A 4 1506 4 HOH TIP . H 6 HOH A 5 1507 5 HOH TIP . H 6 HOH A 6 1508 6 HOH TIP . H 6 HOH A 7 1509 7 HOH TIP . H 6 HOH A 8 1510 8 HOH TIP . H 6 HOH A 9 1511 9 HOH TIP . H 6 HOH A 10 1512 10 HOH TIP . H 6 HOH A 11 1513 11 HOH TIP . H 6 HOH A 12 1514 12 HOH TIP . H 6 HOH A 13 1515 13 HOH TIP . H 6 HOH A 14 1516 14 HOH TIP . H 6 HOH A 15 1517 15 HOH TIP . H 6 HOH A 16 1518 16 HOH TIP . H 6 HOH A 17 1519 17 HOH TIP . H 6 HOH A 18 1520 18 HOH TIP . H 6 HOH A 19 1521 19 HOH TIP . H 6 HOH A 20 1522 20 HOH TIP . H 6 HOH A 21 1523 21 HOH TIP . H 6 HOH A 22 1524 22 HOH TIP . H 6 HOH A 23 1525 23 HOH TIP . H 6 HOH A 24 1526 24 HOH TIP . H 6 HOH A 25 1527 25 HOH TIP . H 6 HOH A 26 1528 26 HOH TIP . H 6 HOH A 27 1529 27 HOH TIP . H 6 HOH A 28 1530 28 HOH TIP . H 6 HOH A 29 1531 29 HOH TIP . H 6 HOH A 30 1532 30 HOH TIP . H 6 HOH A 31 1533 31 HOH TIP . H 6 HOH A 32 1534 32 HOH TIP . H 6 HOH A 33 1535 33 HOH TIP . H 6 HOH A 34 1536 34 HOH TIP . H 6 HOH A 35 1537 35 HOH TIP . H 6 HOH A 36 1538 36 HOH TIP . H 6 HOH A 37 1539 37 HOH TIP . H 6 HOH A 38 1540 38 HOH TIP . H 6 HOH A 39 1541 39 HOH TIP . H 6 HOH A 40 1542 40 HOH TIP . H 6 HOH A 41 1543 41 HOH TIP . H 6 HOH A 42 1544 42 HOH TIP . H 6 HOH A 43 1545 43 HOH TIP . H 6 HOH A 44 1546 44 HOH TIP . H 6 HOH A 45 1547 45 HOH TIP . H 6 HOH A 46 1548 46 HOH TIP . H 6 HOH A 47 1549 47 HOH TIP . H 6 HOH A 48 1550 48 HOH TIP . H 6 HOH A 49 1551 49 HOH TIP . H 6 HOH A 50 1552 50 HOH TIP . H 6 HOH A 51 1553 51 HOH TIP . H 6 HOH A 52 1554 52 HOH TIP . H 6 HOH A 53 1555 54 HOH TIP . H 6 HOH A 54 1556 57 HOH TIP . H 6 HOH A 55 1557 58 HOH TIP . H 6 HOH A 56 1558 59 HOH TIP . H 6 HOH A 57 1559 60 HOH TIP . H 6 HOH A 58 1560 61 HOH TIP . H 6 HOH A 59 1561 62 HOH TIP . H 6 HOH A 60 1562 63 HOH TIP . H 6 HOH A 61 1563 64 HOH TIP . H 6 HOH A 62 1564 65 HOH TIP . H 6 HOH A 63 1565 66 HOH TIP . H 6 HOH A 64 1566 67 HOH TIP . H 6 HOH A 65 1567 68 HOH TIP . H 6 HOH A 66 1568 69 HOH TIP . H 6 HOH A 67 1569 70 HOH TIP . H 6 HOH A 68 1570 71 HOH TIP . H 6 HOH A 69 1571 72 HOH TIP . H 6 HOH A 70 1572 73 HOH TIP . H 6 HOH A 71 1573 74 HOH TIP . H 6 HOH A 72 1574 75 HOH TIP . H 6 HOH A 73 1575 76 HOH TIP . H 6 HOH A 74 1576 77 HOH TIP . H 6 HOH A 75 1577 78 HOH TIP . H 6 HOH A 76 1578 79 HOH TIP . H 6 HOH A 77 1579 80 HOH TIP . H 6 HOH A 78 1580 81 HOH TIP . H 6 HOH A 79 1581 84 HOH TIP . H 6 HOH A 80 1582 85 HOH TIP . H 6 HOH A 81 1583 86 HOH TIP . H 6 HOH A 82 1584 87 HOH TIP . H 6 HOH A 83 1585 88 HOH TIP . H 6 HOH A 84 1586 89 HOH TIP . H 6 HOH A 85 1587 90 HOH TIP . H 6 HOH A 86 1588 91 HOH TIP . H 6 HOH A 87 1589 92 HOH TIP . H 6 HOH A 88 1590 93 HOH TIP . H 6 HOH A 89 1591 94 HOH TIP . H 6 HOH A 90 1592 95 HOH TIP . H 6 HOH A 91 1593 96 HOH TIP . H 6 HOH A 92 1594 97 HOH TIP . H 6 HOH A 93 1595 98 HOH TIP . H 6 HOH A 94 1596 99 HOH TIP . H 6 HOH A 95 1597 100 HOH TIP . H 6 HOH A 96 1598 101 HOH TIP . H 6 HOH A 97 1599 102 HOH TIP . H 6 HOH A 98 1600 103 HOH TIP . H 6 HOH A 99 1601 105 HOH TIP . H 6 HOH A 100 1602 106 HOH TIP . H 6 HOH A 101 1603 107 HOH TIP . H 6 HOH A 102 1604 108 HOH TIP . H 6 HOH A 103 1605 109 HOH TIP . H 6 HOH A 104 1606 110 HOH TIP . H 6 HOH A 105 1607 111 HOH TIP . H 6 HOH A 106 1608 112 HOH TIP . H 6 HOH A 107 1609 113 HOH TIP . H 6 HOH A 108 1610 114 HOH TIP . H 6 HOH A 109 1611 115 HOH TIP . H 6 HOH A 110 1612 116 HOH TIP . H 6 HOH A 111 1613 117 HOH TIP . H 6 HOH A 112 1614 118 HOH TIP . H 6 HOH A 113 1615 120 HOH TIP . H 6 HOH A 114 1616 121 HOH TIP . H 6 HOH A 115 1617 122 HOH TIP . H 6 HOH A 116 1618 123 HOH TIP . I 6 HOH B 1 119 119 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BME . . . F 4 53.854 1.337 26.603 1 51.59 ? C1 BME 397 A 1 HETATM 2 C C2 BME . . . F 4 52.422 1.86 26.451 1 51.59 ? C2 BME 397 A 1 HETATM 3 O O1 BME . . . F 4 54.189 1.259 27.991 1 51.43 ? O1 BME 397 A 1 HETATM 4 S S2 BME . . . F 4 52.002 1.959 24.689 1 52.49 ? S2 BME 397 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 33 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #