data_3CBQ # _model_server_result.job_id CeaFAtu6aEZuzxg7kCkB5A _model_server_result.datetime_utc '2024-11-04 22:51:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3cbq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":304}' # _entry.id 3CBQ # _exptl.entry_id 3CBQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3CBQ _cell.length_a 64.143 _cell.length_b 64.33 _cell.length_c 73.204 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3CBQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 37 A SER 128 1_555 B MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? metalc ? metalc2 B MG MG . A MG 301 1_555 C O1B GDP . A GDP 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.938 ? metalc ? metalc3 B MG MG . A MG 301 1_555 G O HOH . A HOH 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc4 B MG MG . A MG 301 1_555 G O HOH . A HOH 317 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc5 B MG MG . A MG 301 1_555 G O HOH . A HOH 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? metalc ? metalc6 B MG MG . A MG 301 1_555 G O HOH . A HOH 332 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 3CBQ _atom_sites.fract_transf_matrix[1][1] 0.01559 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015545 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01366 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 301 301 MG MG . C 3 GDP A 1 302 302 GDP GDP . D 4 EDO A 1 303 303 EDO EDO . E 4 EDO A 1 304 304 EDO EDO . F 5 UNX A 1 1 1 UNX UNX . G 6 HOH A 1 305 1 HOH HOH . G 6 HOH A 2 306 2 HOH HOH . G 6 HOH A 3 307 3 HOH HOH . G 6 HOH A 4 308 4 HOH HOH . G 6 HOH A 5 309 5 HOH HOH . G 6 HOH A 6 310 6 HOH HOH . G 6 HOH A 7 311 7 HOH HOH . G 6 HOH A 8 312 8 HOH HOH . G 6 HOH A 9 313 9 HOH HOH . G 6 HOH A 10 314 10 HOH HOH . G 6 HOH A 11 315 11 HOH HOH . G 6 HOH A 12 316 12 HOH HOH . G 6 HOH A 13 317 13 HOH HOH . G 6 HOH A 14 318 14 HOH HOH . G 6 HOH A 15 319 15 HOH HOH . G 6 HOH A 16 320 16 HOH HOH . G 6 HOH A 17 321 17 HOH HOH . G 6 HOH A 18 322 18 HOH HOH . G 6 HOH A 19 323 19 HOH HOH . G 6 HOH A 20 324 20 HOH HOH . G 6 HOH A 21 325 21 HOH HOH . G 6 HOH A 22 326 22 HOH HOH . G 6 HOH A 23 327 23 HOH HOH . G 6 HOH A 24 328 24 HOH HOH . G 6 HOH A 25 329 25 HOH HOH . G 6 HOH A 26 330 26 HOH HOH . G 6 HOH A 27 331 27 HOH HOH . G 6 HOH A 28 332 28 HOH HOH . G 6 HOH A 29 333 29 HOH HOH . G 6 HOH A 30 334 30 HOH HOH . G 6 HOH A 31 335 31 HOH HOH . G 6 HOH A 32 336 32 HOH HOH . G 6 HOH A 33 337 33 HOH HOH . G 6 HOH A 34 338 34 HOH HOH . G 6 HOH A 35 339 35 HOH HOH . G 6 HOH A 36 340 36 HOH HOH . G 6 HOH A 37 341 37 HOH HOH . G 6 HOH A 38 342 38 HOH HOH . G 6 HOH A 39 343 39 HOH HOH . G 6 HOH A 40 344 40 HOH HOH . G 6 HOH A 41 345 41 HOH HOH . G 6 HOH A 42 346 42 HOH HOH . G 6 HOH A 43 347 43 HOH HOH . G 6 HOH A 44 348 44 HOH HOH . G 6 HOH A 45 349 45 HOH HOH . G 6 HOH A 46 350 46 HOH HOH . G 6 HOH A 47 351 47 HOH HOH . G 6 HOH A 48 352 48 HOH HOH . G 6 HOH A 49 353 49 HOH HOH . G 6 HOH A 50 354 50 HOH HOH . G 6 HOH A 51 355 51 HOH HOH . G 6 HOH A 52 356 52 HOH HOH . G 6 HOH A 53 357 53 HOH HOH . G 6 HOH A 54 358 54 HOH HOH . G 6 HOH A 55 359 55 HOH HOH . G 6 HOH A 56 360 56 HOH HOH . G 6 HOH A 57 361 57 HOH HOH . G 6 HOH A 58 362 58 HOH HOH . G 6 HOH A 59 363 59 HOH HOH . G 6 HOH A 60 364 60 HOH HOH . G 6 HOH A 61 365 61 HOH HOH . G 6 HOH A 62 366 62 HOH HOH . G 6 HOH A 63 367 63 HOH HOH . G 6 HOH A 64 368 64 HOH HOH . G 6 HOH A 65 369 65 HOH HOH . G 6 HOH A 66 370 66 HOH HOH . G 6 HOH A 67 371 67 HOH HOH . G 6 HOH A 68 372 68 HOH HOH . G 6 HOH A 69 373 69 HOH HOH . G 6 HOH A 70 374 70 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 4 22.708 14.159 4.765 1 37.97 ? C1 EDO 304 A 1 HETATM 2 O O1 EDO . . . E 4 24.046 13.869 4.302 1 35.55 ? O1 EDO 304 A 1 HETATM 3 C C2 EDO . . . E 4 22.564 13.894 6.269 1 39.28 ? C2 EDO 304 A 1 HETATM 4 O O2 EDO . . . E 4 23.058 15.001 7.043 1 38.74 ? O2 EDO 304 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #