data_3CBS # _model_server_result.job_id JrqFPDpygN6odFC9JyUu1A _model_server_result.datetime_utc '2024-12-16 13:41:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3cbs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":200}' # _entry.id 3CBS # _exptl.entry_id 3CBS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 312.403 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2E,4E,6E,8E)-9-(4-hydroxy-2,3,6-trimethylphenyl)-3,7-dimethylnona-2,4,6,8-tetraenoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3CBS _cell.length_a 38.03 _cell.length_b 48.32 _cell.length_c 83.82 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3CBS _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H24 O3' _chem_comp.formula_weight 312.403 _chem_comp.id R12 _chem_comp.mon_nstd_flag . _chem_comp.name '(2E,4E,6E,8E)-9-(4-hydroxy-2,3,6-trimethylphenyl)-3,7-dimethylnona-2,4,6,8-tetraenoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 C15 R12 doub 256 n n C15 O3 R12 sing 257 n n C15 C14 R12 sing 258 n n C14 C13 R12 doub 259 e n C13 C18 R12 sing 260 n n C13 C12 R12 sing 261 n n C12 C11 R12 doub 262 e n C11 C10 R12 sing 263 n n C10 C9 R12 doub 264 e n C9 C19 R12 sing 265 n n C9 C8 R12 sing 266 n n C8 C7 R12 doub 267 e n C7 C4 R12 sing 268 n n C20 C5 R12 sing 269 n n C4 C5 R12 doub 270 n y C4 C3 R12 sing 271 n y C5 C6 R12 sing 272 n y C23 C3 R12 sing 273 n n C3 C2 R12 doub 274 n y C6 C1 R12 doub 275 n y C2 C1 R12 sing 276 n y C1 O1 R12 sing 277 n n C6 H2 R12 sing 278 n n C7 H3 R12 sing 279 n n C8 H4 R12 sing 280 n n C10 H5 R12 sing 281 n n C11 H6 R12 sing 282 n n C12 H7 R12 sing 283 n n C14 H8 R12 sing 284 n n C18 H9 R12 sing 285 n n C18 H10 R12 sing 286 n n C18 H11 R12 sing 287 n n C19 H12 R12 sing 288 n n C19 H13 R12 sing 289 n n C19 H14 R12 sing 290 n n C20 H15 R12 sing 291 n n C20 H16 R12 sing 292 n n C20 H17 R12 sing 293 n n C23 H18 R12 sing 294 n n C23 H19 R12 sing 295 n n C23 H20 R12 sing 296 n n O1 H21 R12 sing 297 n n O3 H22 R12 sing 298 n n C2 C16 R12 sing 299 n n C16 H1 R12 sing 300 n n C16 H23 R12 sing 301 n n C16 H24 R12 sing 302 n n # _atom_sites.entry_id 3CBS _atom_sites.fract_transf_matrix[1][1] 0.026295 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020695 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01193 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 R12 A 1 200 200 R12 R12 . C 3 HOH A 1 301 301 HOH HOH . C 3 HOH A 2 302 302 HOH HOH . C 3 HOH A 3 304 304 HOH HOH . C 3 HOH A 4 305 305 HOH HOH . C 3 HOH A 5 306 306 HOH HOH . C 3 HOH A 6 307 307 HOH HOH . C 3 HOH A 7 308 308 HOH HOH . C 3 HOH A 8 309 309 HOH HOH . C 3 HOH A 9 310 310 HOH HOH . C 3 HOH A 10 311 311 HOH HOH . C 3 HOH A 11 312 312 HOH HOH . C 3 HOH A 12 313 313 HOH HOH . C 3 HOH A 13 314 314 HOH HOH . C 3 HOH A 14 315 315 HOH HOH . C 3 HOH A 15 316 316 HOH HOH . C 3 HOH A 16 318 318 HOH HOH . C 3 HOH A 17 319 319 HOH HOH . C 3 HOH A 18 320 320 HOH HOH . C 3 HOH A 19 321 321 HOH HOH . C 3 HOH A 20 322 322 HOH HOH . C 3 HOH A 21 323 323 HOH HOH . C 3 HOH A 22 324 324 HOH HOH . C 3 HOH A 23 325 325 HOH HOH . C 3 HOH A 24 326 326 HOH HOH . C 3 HOH A 25 327 327 HOH HOH . C 3 HOH A 26 328 328 HOH HOH . C 3 HOH A 27 329 329 HOH HOH . C 3 HOH A 28 330 330 HOH HOH . C 3 HOH A 29 331 331 HOH HOH . C 3 HOH A 30 332 332 HOH HOH . C 3 HOH A 31 333 333 HOH HOH . C 3 HOH A 32 334 334 HOH HOH . C 3 HOH A 33 335 335 HOH HOH . C 3 HOH A 34 336 336 HOH HOH . C 3 HOH A 35 337 337 HOH HOH . C 3 HOH A 36 338 338 HOH HOH . C 3 HOH A 37 339 339 HOH HOH . C 3 HOH A 38 340 340 HOH HOH . C 3 HOH A 39 342 342 HOH HOH . C 3 HOH A 40 343 343 HOH HOH . C 3 HOH A 41 344 344 HOH HOH . C 3 HOH A 42 345 345 HOH HOH . C 3 HOH A 43 347 347 HOH HOH . C 3 HOH A 44 348 348 HOH HOH . C 3 HOH A 45 349 349 HOH HOH . C 3 HOH A 46 350 350 HOH HOH . C 3 HOH A 47 351 351 HOH HOH . C 3 HOH A 48 352 352 HOH HOH . C 3 HOH A 49 354 354 HOH HOH . C 3 HOH A 50 355 355 HOH HOH . C 3 HOH A 51 357 357 HOH HOH . C 3 HOH A 52 358 358 HOH HOH . C 3 HOH A 53 362 362 HOH HOH . C 3 HOH A 54 363 363 HOH HOH . C 3 HOH A 55 364 364 HOH HOH . C 3 HOH A 56 366 366 HOH HOH . C 3 HOH A 57 367 367 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 R12 . . . B 2 15.589 -7.179 23.572 1 18.85 ? C1 R12 200 A 1 HETATM 2 C C2 R12 . . . B 2 15.484 -5.818 23.483 1 19.7 ? C2 R12 200 A 1 HETATM 3 C C3 R12 . . . B 2 16.507 -5.047 22.923 1 18.11 ? C3 R12 200 A 1 HETATM 4 C C4 R12 . . . B 2 17.672 -5.7 22.45 1 17.5 ? C4 R12 200 A 1 HETATM 5 C C5 R12 . . . B 2 17.786 -7.109 22.539 1 17 ? C5 R12 200 A 1 HETATM 6 C C6 R12 . . . B 2 16.727 -7.864 23.113 1 17.93 ? C6 R12 200 A 1 HETATM 7 C C7 R12 . . . B 2 18.779 -4.913 21.853 1 16.9 ? C7 R12 200 A 1 HETATM 8 C C8 R12 . . . B 2 18.696 -4.074 20.824 1 15.83 ? C8 R12 200 A 1 HETATM 9 C C9 R12 . . . B 2 19.738 -3.284 20.272 1 14.04 ? C9 R12 200 A 1 HETATM 10 C C10 R12 . . . B 2 19.38 -2.371 19.362 1 12.02 ? C10 R12 200 A 1 HETATM 11 C C11 R12 . . . B 2 20.246 -1.569 18.569 1 13.33 ? C11 R12 200 A 1 HETATM 12 C C12 R12 . . . B 2 19.793 -0.685 17.686 1 14.13 ? C12 R12 200 A 1 HETATM 13 C C13 R12 . . . B 2 20.577 0.143 16.849 1 14.56 ? C13 R12 200 A 1 HETATM 14 C C14 R12 . . . B 2 19.924 1.037 15.952 1 15.83 ? C14 R12 200 A 1 HETATM 15 C C15 R12 . . . B 2 20.447 1.982 14.987 1 16.85 ? C15 R12 200 A 1 HETATM 16 C C18 R12 . . . B 2 22.068 0.067 16.904 1 14.21 ? C18 R12 200 A 1 HETATM 17 C C19 R12 . . . B 2 21.172 -3.486 20.702 1 13.02 ? C19 R12 200 A 1 HETATM 18 C C20 R12 . . . B 2 19.029 -7.805 22.03 1 15.22 ? C20 R12 200 A 1 HETATM 19 C C23 R12 . . . B 2 16.318 -3.552 22.86 1 17.99 ? C23 R12 200 A 1 HETATM 20 O O1 R12 . . . B 2 14.607 -7.954 24.115 1 19.48 ? O1 R12 200 A 1 HETATM 21 O O2 R12 . . . B 2 19.937 2.135 13.905 1 18.57 ? O2 R12 200 A 1 HETATM 22 O O3 R12 . . . B 2 21.517 2.65 15.377 1 17.01 ? O3 R12 200 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 337 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 22 #