data_3CC9 # _model_server_result.job_id ENxJu5CyyxynzbrGVJkKyg _model_server_result.datetime_utc '2024-11-29 04:49:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3cc9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":502}' # _entry.id 3CC9 # _exptl.entry_id 3CC9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3CC9 _cell.length_a 107.095 _cell.length_b 108.985 _cell.length_c 141.354 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3CC9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,J,K 1 1 C,D,H,I,L,M 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE ARG 84 A ARG 84 1_555 E NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.829 ? metalc ? metalc2 A OE2 GLU 116 A GLU 116 1_555 E NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.853 ? metalc ? metalc3 E NA NA . A NA 502 1_555 J O HOH . A HOH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.821 ? metalc ? metalc4 E NA NA . A NA 502 1_555 J O HOH . A HOH 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.853 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3CC9 _atom_sites.fract_transf_matrix[1][1] 0.009338 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009176 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007074 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NA A 1 502 502 NA NA . F 3 GRG A 1 501 501 GRG GRG . G 3 GRG B 1 501 501 GRG GRG . H 3 GRG C 1 501 501 GRG GRG . I 3 GRG D 1 501 501 GRG GRG . J 4 HOH A 1 503 1 HOH HOH . J 4 HOH A 2 504 2 HOH HOH . J 4 HOH A 3 505 10 HOH HOH . J 4 HOH A 4 506 12 HOH HOH . J 4 HOH A 5 507 13 HOH HOH . J 4 HOH A 6 508 14 HOH HOH . J 4 HOH A 7 509 15 HOH HOH . J 4 HOH A 8 510 16 HOH HOH . J 4 HOH A 9 511 17 HOH HOH . J 4 HOH A 10 512 18 HOH HOH . J 4 HOH A 11 513 20 HOH HOH . J 4 HOH A 12 514 25 HOH HOH . J 4 HOH A 13 515 30 HOH HOH . J 4 HOH A 14 516 38 HOH HOH . J 4 HOH A 15 517 1 HOH HOH . J 4 HOH A 16 518 2 HOH HOH . J 4 HOH A 17 519 8 HOH HOH . J 4 HOH A 18 520 15 HOH HOH . J 4 HOH A 19 521 21 HOH HOH . J 4 HOH A 20 522 30 HOH HOH . J 4 HOH A 21 523 34 HOH HOH . J 4 HOH A 22 524 36 HOH HOH . J 4 HOH A 23 525 70 HOH HOH . J 4 HOH A 24 526 85 HOH HOH . J 4 HOH A 25 527 94 HOH HOH . J 4 HOH A 26 528 109 HOH HOH . J 4 HOH A 27 529 117 HOH HOH . J 4 HOH A 28 530 125 HOH HOH . J 4 HOH A 29 531 129 HOH HOH . J 4 HOH A 30 532 149 HOH HOH . J 4 HOH A 31 533 150 HOH HOH . J 4 HOH A 32 534 152 HOH HOH . J 4 HOH A 33 535 156 HOH HOH . J 4 HOH A 34 536 185 HOH HOH . J 4 HOH A 35 537 1 HOH HOH . J 4 HOH A 36 538 53 HOH HOH . J 4 HOH A 37 539 59 HOH HOH . J 4 HOH A 38 540 78 HOH HOH . J 4 HOH A 39 541 153 HOH HOH . J 4 HOH A 40 542 248 HOH HOH . J 4 HOH A 41 543 347 HOH HOH . J 4 HOH A 42 544 349 HOH HOH . J 4 HOH A 43 545 352 HOH HOH . J 4 HOH A 44 546 354 HOH HOH . J 4 HOH A 45 547 355 HOH HOH . J 4 HOH A 46 548 358 HOH HOH . J 4 HOH A 47 549 361 HOH HOH . J 4 HOH A 48 550 364 HOH HOH . J 4 HOH A 49 551 368 HOH HOH . J 4 HOH A 50 552 371 HOH HOH . J 4 HOH A 51 553 372 HOH HOH . J 4 HOH A 52 554 373 HOH HOH . J 4 HOH A 53 555 396 HOH HOH . J 4 HOH A 54 556 397 HOH HOH . J 4 HOH A 55 557 398 HOH HOH . J 4 HOH A 56 558 399 HOH HOH . J 4 HOH A 57 559 400 HOH HOH . J 4 HOH A 58 560 403 HOH HOH . J 4 HOH A 59 561 404 HOH HOH . J 4 HOH A 60 562 409 HOH HOH . J 4 HOH A 61 563 414 HOH HOH . J 4 HOH A 62 564 420 HOH HOH . J 4 HOH A 63 565 427 HOH HOH . J 4 HOH A 64 566 448 HOH HOH . J 4 HOH A 65 567 449 HOH HOH . J 4 HOH A 66 568 4 HOH HOH . J 4 HOH A 67 569 5 HOH HOH . J 4 HOH A 68 570 11 HOH HOH . J 4 HOH A 69 571 46 HOH HOH . J 4 HOH A 70 572 82 HOH HOH . J 4 HOH A 71 573 55 HOH HOH . J 4 HOH A 72 574 78 HOH HOH . J 4 HOH A 73 575 103 HOH HOH . J 4 HOH A 74 576 195 HOH HOH . J 4 HOH A 75 577 368 HOH HOH . K 4 HOH B 1 502 3 HOH HOH . K 4 HOH B 2 503 4 HOH HOH . K 4 HOH B 3 504 5 HOH HOH . K 4 HOH B 4 505 6 HOH HOH . K 4 HOH B 5 506 7 HOH HOH . K 4 HOH B 6 507 8 HOH HOH . K 4 HOH B 7 508 9 HOH HOH . K 4 HOH B 8 509 21 HOH HOH . K 4 HOH B 9 510 22 HOH HOH . K 4 HOH B 10 511 26 HOH HOH . K 4 HOH B 11 512 3 HOH HOH . K 4 HOH B 12 513 5 HOH HOH . K 4 HOH B 13 514 6 HOH HOH . K 4 HOH B 14 515 25 HOH HOH . K 4 HOH B 15 516 28 HOH HOH . K 4 HOH B 16 517 32 HOH HOH . K 4 HOH B 17 518 45 HOH HOH . K 4 HOH B 18 519 61 HOH HOH . K 4 HOH B 19 520 79 HOH HOH . K 4 HOH B 20 521 142 HOH HOH . K 4 HOH B 21 522 224 HOH HOH . K 4 HOH B 22 523 232 HOH HOH . K 4 HOH B 23 524 254 HOH HOH . K 4 HOH B 24 525 320 HOH HOH . K 4 HOH B 25 526 393 HOH HOH . K 4 HOH B 26 527 10 HOH HOH . K 4 HOH B 27 528 45 HOH HOH . K 4 HOH B 28 529 64 HOH HOH . K 4 HOH B 29 530 125 HOH HOH . K 4 HOH B 30 531 174 HOH HOH . K 4 HOH B 31 532 181 HOH HOH . K 4 HOH B 32 533 203 HOH HOH . K 4 HOH B 33 534 340 HOH HOH . K 4 HOH B 34 535 342 HOH HOH . K 4 HOH B 35 536 343 HOH HOH . K 4 HOH B 36 537 344 HOH HOH . K 4 HOH B 37 538 350 HOH HOH . K 4 HOH B 38 539 351 HOH HOH . K 4 HOH B 39 540 359 HOH HOH . K 4 HOH B 40 541 362 HOH HOH . K 4 HOH B 41 542 366 HOH HOH . K 4 HOH B 42 543 367 HOH HOH . K 4 HOH B 43 544 374 HOH HOH . K 4 HOH B 44 545 378 HOH HOH . K 4 HOH B 45 546 379 HOH HOH . K 4 HOH B 46 547 383 HOH HOH . K 4 HOH B 47 548 384 HOH HOH . K 4 HOH B 48 549 388 HOH HOH . K 4 HOH B 49 550 394 HOH HOH . K 4 HOH B 50 551 405 HOH HOH . K 4 HOH B 51 552 408 HOH HOH . K 4 HOH B 52 553 410 HOH HOH . K 4 HOH B 53 554 413 HOH HOH . K 4 HOH B 54 555 415 HOH HOH . K 4 HOH B 55 556 418 HOH HOH . K 4 HOH B 56 557 422 HOH HOH . K 4 HOH B 57 558 426 HOH HOH . K 4 HOH B 58 559 431 HOH HOH . K 4 HOH B 59 560 432 HOH HOH . K 4 HOH B 60 561 434 HOH HOH . K 4 HOH B 61 562 436 HOH HOH . K 4 HOH B 62 563 441 HOH HOH . K 4 HOH B 63 564 446 HOH HOH . K 4 HOH B 64 565 8 HOH HOH . K 4 HOH B 65 566 15 HOH HOH . K 4 HOH B 66 567 30 HOH HOH . K 4 HOH B 67 568 40 HOH HOH . K 4 HOH B 68 569 96 HOH HOH . K 4 HOH B 69 570 112 HOH HOH . K 4 HOH B 70 571 130 HOH HOH . K 4 HOH B 71 572 138 HOH HOH . K 4 HOH B 72 573 139 HOH HOH . K 4 HOH B 73 574 162 HOH HOH . K 4 HOH B 74 575 231 HOH HOH . K 4 HOH B 75 576 424 HOH HOH . K 4 HOH B 76 577 1 HOH HOH . K 4 HOH B 77 578 13 HOH HOH . K 4 HOH B 78 579 14 HOH HOH . K 4 HOH B 79 580 39 HOH HOH . K 4 HOH B 80 581 41 HOH HOH . K 4 HOH B 81 582 175 HOH HOH . K 4 HOH B 82 583 198 HOH HOH . K 4 HOH B 83 584 362 HOH HOH . L 4 HOH C 1 502 33 HOH HOH . L 4 HOH C 2 503 34 HOH HOH . L 4 HOH C 3 504 35 HOH HOH . L 4 HOH C 4 505 36 HOH HOH . L 4 HOH C 5 506 24 HOH HOH . L 4 HOH C 6 507 49 HOH HOH . L 4 HOH C 7 508 60 HOH HOH . L 4 HOH C 8 509 68 HOH HOH . L 4 HOH C 9 510 80 HOH HOH . L 4 HOH C 10 511 89 HOH HOH . L 4 HOH C 11 512 126 HOH HOH . L 4 HOH C 12 513 128 HOH HOH . L 4 HOH C 13 514 171 HOH HOH . L 4 HOH C 14 515 191 HOH HOH . L 4 HOH C 15 516 196 HOH HOH . L 4 HOH C 16 517 295 HOH HOH . L 4 HOH C 17 518 357 HOH HOH . L 4 HOH C 18 519 386 HOH HOH . L 4 HOH C 19 520 37 HOH HOH . L 4 HOH C 20 521 116 HOH HOH . L 4 HOH C 21 522 162 HOH HOH . L 4 HOH C 22 523 339 HOH HOH . L 4 HOH C 23 524 348 HOH HOH . L 4 HOH C 24 525 357 HOH HOH . L 4 HOH C 25 526 360 HOH HOH . L 4 HOH C 26 527 369 HOH HOH . L 4 HOH C 27 528 370 HOH HOH . L 4 HOH C 28 529 411 HOH HOH . L 4 HOH C 29 530 421 HOH HOH . L 4 HOH C 30 531 424 HOH HOH . L 4 HOH C 31 532 437 HOH HOH . L 4 HOH C 32 533 444 HOH HOH . L 4 HOH C 33 534 1 HOH HOH . L 4 HOH C 34 535 19 HOH HOH . L 4 HOH C 35 536 27 HOH HOH . L 4 HOH C 36 537 83 HOH HOH . L 4 HOH C 37 538 92 HOH HOH . L 4 HOH C 38 539 195 HOH HOH . L 4 HOH C 39 540 250 HOH HOH . L 4 HOH C 40 541 19 HOH HOH . L 4 HOH C 41 542 40 HOH HOH . L 4 HOH C 42 543 48 HOH HOH . L 4 HOH C 43 544 66 HOH HOH . L 4 HOH C 44 545 104 HOH HOH . L 4 HOH C 45 546 183 HOH HOH . L 4 HOH C 46 547 219 HOH HOH . L 4 HOH C 47 548 380 HOH HOH . M 4 HOH D 1 502 23 HOH HOH . M 4 HOH D 2 503 24 HOH HOH . M 4 HOH D 3 504 27 HOH HOH . M 4 HOH D 4 505 28 HOH HOH . M 4 HOH D 5 506 29 HOH HOH . M 4 HOH D 6 507 31 HOH HOH . M 4 HOH D 7 508 32 HOH HOH . M 4 HOH D 8 509 37 HOH HOH . M 4 HOH D 9 510 7 HOH HOH . M 4 HOH D 10 511 64 HOH HOH . M 4 HOH D 11 512 107 HOH HOH . M 4 HOH D 12 513 112 HOH HOH . M 4 HOH D 13 514 162 HOH HOH . M 4 HOH D 14 515 177 HOH HOH . M 4 HOH D 15 516 217 HOH HOH . M 4 HOH D 16 517 299 HOH HOH . M 4 HOH D 17 518 302 HOH HOH . M 4 HOH D 18 519 5 HOH HOH . M 4 HOH D 19 520 42 HOH HOH . M 4 HOH D 20 521 147 HOH HOH . M 4 HOH D 21 522 236 HOH HOH . M 4 HOH D 22 523 338 HOH HOH . M 4 HOH D 23 524 341 HOH HOH . M 4 HOH D 24 525 363 HOH HOH . M 4 HOH D 25 526 375 HOH HOH . M 4 HOH D 26 527 380 HOH HOH . M 4 HOH D 27 528 386 HOH HOH . M 4 HOH D 28 529 412 HOH HOH . M 4 HOH D 29 530 416 HOH HOH . M 4 HOH D 30 531 17 HOH HOH . M 4 HOH D 31 532 76 HOH HOH . M 4 HOH D 32 533 87 HOH HOH . M 4 HOH D 33 534 421 HOH HOH . M 4 HOH D 34 535 116 HOH HOH . M 4 HOH D 35 536 209 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 2 _atom_site.Cartn_x -26.344 _atom_site.Cartn_y 6.913 _atom_site.Cartn_z 22.928 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 54.38 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 502 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 339 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #