data_3CCG # _model_server_result.job_id jzAh_rvj_jt-q9fP-xgYug _model_server_result.datetime_utc '2024-12-21 14:16:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ccg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":192}' # _entry.id 3CCG # _exptl.entry_id 3CCG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 125.46 _cell.angle_gamma 90 _cell.entry_id 3CCG _cell.length_a 90.54 _cell.length_b 36.32 _cell.length_c 72.6 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3CCG _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLY 1 A GLY 0 1_555 A N MSE 2 A MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C MSE 2 A MSE 1 1_555 A N TRP 3 A TRP 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 A C LEU 12 A LEU 11 1_555 A N MSE 13 A MSE 12 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.327 ? covale ? covale4 A C LEU 12 A LEU 11 1_555 A N MSE 13 A MSE 12 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.327 ? covale ? covale5 A C MSE 13 A MSE 12 1_555 A N ASN 14 A ASN 13 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.327 ? covale ? covale6 A C MSE 13 A MSE 12 1_555 A N ASN 14 A ASN 13 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.327 ? covale ? covale7 A C VAL 27 A VAL 26 1_555 A N MSE 28 A MSE 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale8 A C MSE 28 A MSE 27 1_555 A N ASP 29 A ASP 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale9 A C ASN 118 A ASN 117 1_555 A N MSE 119 A MSE 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? covale ? covale10 A C MSE 119 A MSE 118 1_555 A N SER 120 A SER 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale11 A C LEU 157 A LEU 156 1_555 A N MSE 158 A MSE 157 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.328 ? covale ? covale12 A C LEU 157 A LEU 156 1_555 A N MSE 158 A MSE 157 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.34 ? covale ? covale13 A C MSE 158 A MSE 157 1_555 A N SER 159 A SER 158 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale14 A C MSE 158 A MSE 157 1_555 A N SER 159 A SER 158 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.329 ? metalc ? metalc1 A NE2 HIS 23 A HIS 22 1_555 C FE FE . A FE 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc2 A NE2 HIS 52 A HIS 51 1_555 C FE FE . A FE 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.524 ? metalc ? metalc3 A OD1 ASP 53 A ASP 52 1_555 B FE FE . A FE 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? metalc ? metalc4 A OD2 ASP 53 A ASP 52 1_555 C FE FE . A FE 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? metalc ? metalc5 A NE2 HIS 86 A HIS 85 1_555 B FE FE . A FE 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? metalc ? metalc6 A NE2 HIS 112 A HIS 111 1_555 B FE FE . A FE 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? metalc ? metalc7 A OD1 ASP 130 A ASP 129 1_555 C FE FE . A FE 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc8 B FE FE . A FE 190 1_555 D O1 PO4 . A PO4 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? metalc ? metalc9 B FE FE . A FE 190 1_555 E O HOH . A HOH 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? metalc ? metalc10 B FE FE . A FE 190 1_555 E O HOH . A HOH 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc11 C FE FE . A FE 191 1_555 D O4 PO4 . A PO4 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? metalc ? metalc12 C FE FE . A FE 191 1_555 E O HOH . A HOH 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.711 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 241 n n P O2 PO4 sing 242 n n P O3 PO4 sing 243 n n P O4 PO4 sing 244 n n # _atom_sites.entry_id 3CCG _atom_sites.fract_transf_matrix[1][1] 0.011045 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007867 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.027533 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016911 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FE A 1 190 1 FE FE . C 2 FE A 1 191 2 FE FE . D 3 PO4 A 1 192 3 PO4 PO4 . E 4 HOH A 1 193 4 HOH HOH . E 4 HOH A 2 194 5 HOH HOH . E 4 HOH A 3 195 6 HOH HOH . E 4 HOH A 4 196 7 HOH HOH . E 4 HOH A 5 197 8 HOH HOH . E 4 HOH A 6 198 9 HOH HOH . E 4 HOH A 7 199 10 HOH HOH . E 4 HOH A 8 200 11 HOH HOH . E 4 HOH A 9 201 12 HOH HOH . E 4 HOH A 10 202 13 HOH HOH . E 4 HOH A 11 203 14 HOH HOH . E 4 HOH A 12 204 15 HOH HOH . E 4 HOH A 13 205 16 HOH HOH . E 4 HOH A 14 206 17 HOH HOH . E 4 HOH A 15 207 18 HOH HOH . E 4 HOH A 16 208 19 HOH HOH . E 4 HOH A 17 209 20 HOH HOH . E 4 HOH A 18 210 21 HOH HOH . E 4 HOH A 19 211 22 HOH HOH . E 4 HOH A 20 212 23 HOH HOH . E 4 HOH A 21 213 24 HOH HOH . E 4 HOH A 22 214 25 HOH HOH . E 4 HOH A 23 215 26 HOH HOH . E 4 HOH A 24 216 27 HOH HOH . E 4 HOH A 25 217 28 HOH HOH . E 4 HOH A 26 218 29 HOH HOH . E 4 HOH A 27 219 30 HOH HOH . E 4 HOH A 28 220 31 HOH HOH . E 4 HOH A 29 221 32 HOH HOH . E 4 HOH A 30 222 33 HOH HOH . E 4 HOH A 31 223 34 HOH HOH . E 4 HOH A 32 224 35 HOH HOH . E 4 HOH A 33 225 36 HOH HOH . E 4 HOH A 34 226 37 HOH HOH . E 4 HOH A 35 227 38 HOH HOH . E 4 HOH A 36 228 39 HOH HOH . E 4 HOH A 37 229 40 HOH HOH . E 4 HOH A 38 230 41 HOH HOH . E 4 HOH A 39 231 42 HOH HOH . E 4 HOH A 40 232 43 HOH HOH . E 4 HOH A 41 233 44 HOH HOH . E 4 HOH A 42 234 45 HOH HOH . E 4 HOH A 43 235 46 HOH HOH . E 4 HOH A 44 236 47 HOH HOH . E 4 HOH A 45 237 48 HOH HOH . E 4 HOH A 46 238 49 HOH HOH . E 4 HOH A 47 239 50 HOH HOH . E 4 HOH A 48 240 51 HOH HOH . E 4 HOH A 49 241 52 HOH HOH . E 4 HOH A 50 242 53 HOH HOH . E 4 HOH A 51 243 54 HOH HOH . E 4 HOH A 52 244 55 HOH HOH . E 4 HOH A 53 245 56 HOH HOH . E 4 HOH A 54 246 57 HOH HOH . E 4 HOH A 55 247 58 HOH HOH . E 4 HOH A 56 248 59 HOH HOH . E 4 HOH A 57 249 60 HOH HOH . E 4 HOH A 58 250 61 HOH HOH . E 4 HOH A 59 251 62 HOH HOH . E 4 HOH A 60 252 63 HOH HOH . E 4 HOH A 61 253 64 HOH HOH . E 4 HOH A 62 254 65 HOH HOH . E 4 HOH A 63 255 66 HOH HOH . E 4 HOH A 64 256 67 HOH HOH . E 4 HOH A 65 257 68 HOH HOH . E 4 HOH A 66 258 69 HOH HOH . E 4 HOH A 67 259 70 HOH HOH . E 4 HOH A 68 260 71 HOH HOH . E 4 HOH A 69 261 72 HOH HOH . E 4 HOH A 70 262 73 HOH HOH . E 4 HOH A 71 263 74 HOH HOH . E 4 HOH A 72 264 75 HOH HOH . E 4 HOH A 73 265 76 HOH HOH . E 4 HOH A 74 266 77 HOH HOH . E 4 HOH A 75 267 78 HOH HOH . E 4 HOH A 76 268 79 HOH HOH . E 4 HOH A 77 269 80 HOH HOH . E 4 HOH A 78 270 81 HOH HOH . E 4 HOH A 79 271 82 HOH HOH . E 4 HOH A 80 272 83 HOH HOH . E 4 HOH A 81 273 84 HOH HOH . E 4 HOH A 82 274 85 HOH HOH . E 4 HOH A 83 275 86 HOH HOH . E 4 HOH A 84 276 87 HOH HOH . E 4 HOH A 85 277 88 HOH HOH . E 4 HOH A 86 278 89 HOH HOH . E 4 HOH A 87 279 90 HOH HOH . E 4 HOH A 88 280 91 HOH HOH . E 4 HOH A 89 281 92 HOH HOH . E 4 HOH A 90 282 93 HOH HOH . E 4 HOH A 91 283 94 HOH HOH . E 4 HOH A 92 284 95 HOH HOH . E 4 HOH A 93 285 96 HOH HOH . E 4 HOH A 94 286 97 HOH HOH . E 4 HOH A 95 287 98 HOH HOH . E 4 HOH A 96 288 99 HOH HOH . E 4 HOH A 97 289 100 HOH HOH . E 4 HOH A 98 290 101 HOH HOH . E 4 HOH A 99 291 102 HOH HOH . E 4 HOH A 100 292 103 HOH HOH . E 4 HOH A 101 293 104 HOH HOH . E 4 HOH A 102 294 105 HOH HOH . E 4 HOH A 103 295 106 HOH HOH . E 4 HOH A 104 296 107 HOH HOH . E 4 HOH A 105 297 108 HOH HOH . E 4 HOH A 106 298 109 HOH HOH . E 4 HOH A 107 299 110 HOH HOH . E 4 HOH A 108 300 111 HOH HOH . E 4 HOH A 109 301 112 HOH HOH . E 4 HOH A 110 302 113 HOH HOH . E 4 HOH A 111 303 114 HOH HOH . E 4 HOH A 112 304 115 HOH HOH . E 4 HOH A 113 305 116 HOH HOH . E 4 HOH A 114 306 117 HOH HOH . E 4 HOH A 115 307 118 HOH HOH . E 4 HOH A 116 308 119 HOH HOH . E 4 HOH A 117 309 120 HOH HOH . E 4 HOH A 118 310 121 HOH HOH . E 4 HOH A 119 311 122 HOH HOH . E 4 HOH A 120 312 123 HOH HOH . E 4 HOH A 121 313 124 HOH HOH . E 4 HOH A 122 314 125 HOH HOH . E 4 HOH A 123 315 126 HOH HOH . E 4 HOH A 124 316 127 HOH HOH . E 4 HOH A 125 317 128 HOH HOH . E 4 HOH A 126 318 129 HOH HOH . E 4 HOH A 127 319 130 HOH HOH . E 4 HOH A 128 320 131 HOH HOH . E 4 HOH A 129 321 132 HOH HOH . E 4 HOH A 130 322 133 HOH HOH . E 4 HOH A 131 323 134 HOH HOH . E 4 HOH A 132 324 135 HOH HOH . E 4 HOH A 133 325 136 HOH HOH . E 4 HOH A 134 326 137 HOH HOH . E 4 HOH A 135 327 138 HOH HOH . E 4 HOH A 136 328 139 HOH HOH . E 4 HOH A 137 329 140 HOH HOH . E 4 HOH A 138 330 141 HOH HOH . E 4 HOH A 139 331 142 HOH HOH . E 4 HOH A 140 332 143 HOH HOH . E 4 HOH A 141 333 144 HOH HOH . E 4 HOH A 142 334 145 HOH HOH . E 4 HOH A 143 335 146 HOH HOH . E 4 HOH A 144 336 147 HOH HOH . E 4 HOH A 145 337 148 HOH HOH . E 4 HOH A 146 338 149 HOH HOH . E 4 HOH A 147 339 150 HOH HOH . E 4 HOH A 148 340 151 HOH HOH . E 4 HOH A 149 341 152 HOH HOH . E 4 HOH A 150 342 153 HOH HOH . E 4 HOH A 151 343 154 HOH HOH . E 4 HOH A 152 344 155 HOH HOH . E 4 HOH A 153 345 156 HOH HOH . E 4 HOH A 154 346 157 HOH HOH . E 4 HOH A 155 347 158 HOH HOH . E 4 HOH A 156 348 159 HOH HOH . E 4 HOH A 157 349 160 HOH HOH . E 4 HOH A 158 350 161 HOH HOH . E 4 HOH A 159 351 162 HOH HOH . E 4 HOH A 160 352 163 HOH HOH . E 4 HOH A 161 353 164 HOH HOH . E 4 HOH A 162 354 165 HOH HOH . E 4 HOH A 163 355 166 HOH HOH . E 4 HOH A 164 356 167 HOH HOH . E 4 HOH A 165 357 168 HOH HOH . E 4 HOH A 166 358 169 HOH HOH . E 4 HOH A 167 359 170 HOH HOH . E 4 HOH A 168 360 171 HOH HOH . E 4 HOH A 169 361 172 HOH HOH . E 4 HOH A 170 362 173 HOH HOH . E 4 HOH A 171 363 174 HOH HOH . E 4 HOH A 172 364 175 HOH HOH . E 4 HOH A 173 365 176 HOH HOH . E 4 HOH A 174 366 177 HOH HOH . E 4 HOH A 175 367 178 HOH HOH . E 4 HOH A 176 368 179 HOH HOH . E 4 HOH A 177 369 180 HOH HOH . E 4 HOH A 178 370 181 HOH HOH . E 4 HOH A 179 371 182 HOH HOH . E 4 HOH A 180 372 183 HOH HOH . E 4 HOH A 181 373 184 HOH HOH . E 4 HOH A 182 374 185 HOH HOH . E 4 HOH A 183 375 186 HOH HOH . E 4 HOH A 184 376 187 HOH HOH . E 4 HOH A 185 377 188 HOH HOH . E 4 HOH A 186 378 189 HOH HOH . E 4 HOH A 187 379 190 HOH HOH . E 4 HOH A 188 380 191 HOH HOH . E 4 HOH A 189 381 192 HOH HOH . E 4 HOH A 190 382 193 HOH HOH . E 4 HOH A 191 383 194 HOH HOH . E 4 HOH A 192 384 195 HOH HOH . E 4 HOH A 193 385 196 HOH HOH . E 4 HOH A 194 386 197 HOH HOH . E 4 HOH A 195 387 198 HOH HOH . E 4 HOH A 196 388 199 HOH HOH . E 4 HOH A 197 389 200 HOH HOH . E 4 HOH A 198 390 201 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . D 3 18.293 24.695 8.362 1 24.82 ? P PO4 192 A 1 HETATM 2 O O1 PO4 . . . D 3 18.886 23.206 8.263 1 17.3 ? O1 PO4 192 A 1 HETATM 3 O O2 PO4 . . . D 3 16.754 24.8 8.444 1 27.51 ? O2 PO4 192 A 1 HETATM 4 O O3 PO4 . . . D 3 18.874 25.523 7.218 1 26.35 ? O3 PO4 192 A 1 HETATM 5 O O4 PO4 . . . D 3 18.745 25.351 9.599 1 24.45 ? O4 PO4 192 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #