data_3CCH # _model_server_result.job_id 7XXG1WHkcmkz1JyWvPvO1Q _model_server_result.datetime_utc '2024-12-02 23:52:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3cch # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"T","auth_seq_id":279}' # _entry.id 3CCH # _exptl.entry_id 3CCH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 120 _cell.angle_gamma 90 _cell.entry_id 3CCH _cell.length_a 85.5 _cell.length_b 176.6 _cell.length_c 85.5 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3CCH _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 PISA trimeric 3 author_and_software_defined_assembly 3 PISA trimeric 3 author_and_software_defined_assembly 4 PISA hexameric 6 software_defined_assembly 5 PISA hexameric 6 software_defined_assembly 6 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,M,N,O,P,Q,LA,MA,NA 1 1 D,E,F,R,S,T,U,V,W,X,Y,OA,PA,QA 2 1 G,H,I,Z,AA,BA,CA,DA,EA,RA,SA,TA 3 1 J,K,L,FA,GA,HA,IA,JA,KA,UA,VA,WA 4 1 D,E,F,R,S,T,U,V,W,X,Y,OA,PA,QA 5 1 J,K,L,FA,GA,HA,IA,JA,KA,UA,VA,WA 5 2 G,H,I,Z,AA,BA,CA,DA,EA,RA,SA,TA 6 1 A,B,C,M,N,O,P,Q,LA,MA,NA 6 3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 1_455 x-1,y,z 1 0 0 0 1 0 0 0 1 -85.5 0 0 3 'crystal symmetry operation' 1_556 x,y,z+1 1 0 0 0 1 0 0 0 1 -42.75 0 74.045172 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 M N N ? 4 T N N ? 4 AA N N ? 4 HA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 101 A CYS 101 1_555 A SG CYS 164 A CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? disulf ? disulf2 A SG CYS 203 A CYS 203 1_555 A SG CYS 259 A CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf3 B SG CYS 25 B CYS 25 1_555 B SG CYS 80 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf4 D SG CYS 101 D CYS 101 1_555 D SG CYS 164 D CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? disulf ? disulf5 D SG CYS 203 D CYS 203 1_555 D SG CYS 259 D CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf6 E SG CYS 25 E CYS 25 1_555 E SG CYS 80 E CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf7 G SG CYS 101 G CYS 101 1_555 G SG CYS 164 G CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf8 G SG CYS 203 G CYS 203 1_555 G SG CYS 259 G CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf9 H SG CYS 25 H CYS 25 1_555 H SG CYS 80 H CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf10 J SG CYS 101 J CYS 101 1_555 J SG CYS 164 J CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf11 J SG CYS 203 J CYS 203 1_555 J SG CYS 259 J CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf12 K SG CYS 25 K CYS 25 1_555 K SG CYS 80 K CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3CCH _atom_sites.fract_transf_matrix[1][1] 0.011696 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006753 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005663 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013505 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 4 GOL A 1 277 1 GOL GOL . N 5 SO4 B 1 100 5 SO4 SO4 . O 5 SO4 B 1 101 6 SO4 SO4 . P 5 SO4 B 1 102 13 SO4 SO4 . Q 5 SO4 B 1 103 18 SO4 SO4 . R 5 SO4 D 1 277 2 SO4 SO4 . S 5 SO4 D 1 278 10 SO4 SO4 . T 4 GOL D 1 279 2 GOL GOL . U 5 SO4 E 1 100 4 SO4 SO4 . V 5 SO4 E 1 101 9 SO4 SO4 . W 5 SO4 E 1 102 14 SO4 SO4 . X 5 SO4 E 1 103 15 SO4 SO4 . Y 5 SO4 E 1 104 20 SO4 SO4 . Z 5 SO4 G 1 277 21 SO4 SO4 . AA 4 GOL G 1 278 4 GOL GOL . BA 5 SO4 H 1 100 1 SO4 SO4 . CA 5 SO4 H 1 101 11 SO4 SO4 . DA 5 SO4 H 1 102 12 SO4 SO4 . EA 5 SO4 H 1 103 17 SO4 SO4 . FA 5 SO4 J 1 277 7 SO4 SO4 . GA 5 SO4 J 1 278 19 SO4 SO4 . HA 4 GOL J 1 279 3 GOL GOL . IA 5 SO4 K 1 100 3 SO4 SO4 . JA 5 SO4 K 1 101 8 SO4 SO4 . KA 5 SO4 K 1 102 16 SO4 SO4 . LA 6 HOH A 1 278 3 HOH HOH . LA 6 HOH A 2 279 10 HOH HOH . LA 6 HOH A 3 280 13 HOH HOH . LA 6 HOH A 4 281 14 HOH HOH . LA 6 HOH A 5 282 20 HOH HOH . LA 6 HOH A 6 283 22 HOH HOH . LA 6 HOH A 7 284 39 HOH HOH . LA 6 HOH A 8 285 43 HOH HOH . LA 6 HOH A 9 286 47 HOH HOH . LA 6 HOH A 10 287 48 HOH HOH . LA 6 HOH A 11 288 50 HOH HOH . LA 6 HOH A 12 289 63 HOH HOH . LA 6 HOH A 13 290 67 HOH HOH . LA 6 HOH A 14 291 69 HOH HOH . LA 6 HOH A 15 292 78 HOH HOH . LA 6 HOH A 16 293 79 HOH HOH . MA 6 HOH B 1 104 1 HOH HOH . MA 6 HOH B 2 105 6 HOH HOH . MA 6 HOH B 3 106 16 HOH HOH . MA 6 HOH B 4 107 19 HOH HOH . MA 6 HOH B 5 108 21 HOH HOH . MA 6 HOH B 6 109 31 HOH HOH . MA 6 HOH B 7 110 35 HOH HOH . MA 6 HOH B 8 111 36 HOH HOH . MA 6 HOH B 9 112 37 HOH HOH . MA 6 HOH B 10 113 46 HOH HOH . MA 6 HOH B 11 114 53 HOH HOH . MA 6 HOH B 12 115 61 HOH HOH . MA 6 HOH B 13 116 75 HOH HOH . NA 6 HOH C 1 55 55 HOH HOH . OA 6 HOH D 1 280 9 HOH HOH . OA 6 HOH D 2 281 15 HOH HOH . OA 6 HOH D 3 282 17 HOH HOH . OA 6 HOH D 4 283 24 HOH HOH . OA 6 HOH D 5 284 32 HOH HOH . OA 6 HOH D 6 285 34 HOH HOH . OA 6 HOH D 7 286 42 HOH HOH . OA 6 HOH D 8 287 45 HOH HOH . OA 6 HOH D 9 288 51 HOH HOH . OA 6 HOH D 10 289 54 HOH HOH . OA 6 HOH D 11 290 68 HOH HOH . OA 6 HOH D 12 291 71 HOH HOH . OA 6 HOH D 13 292 80 HOH HOH . OA 6 HOH D 14 293 82 HOH HOH . PA 6 HOH E 1 105 25 HOH HOH . PA 6 HOH E 2 106 27 HOH HOH . PA 6 HOH E 3 107 30 HOH HOH . PA 6 HOH E 4 108 44 HOH HOH . PA 6 HOH E 5 109 52 HOH HOH . PA 6 HOH E 6 110 59 HOH HOH . PA 6 HOH E 7 111 65 HOH HOH . PA 6 HOH E 8 112 72 HOH HOH . PA 6 HOH E 9 113 74 HOH HOH . QA 6 HOH F 1 76 76 HOH HOH . RA 6 HOH G 1 279 4 HOH HOH . RA 6 HOH G 2 280 5 HOH HOH . RA 6 HOH G 3 281 8 HOH HOH . RA 6 HOH G 4 282 12 HOH HOH . RA 6 HOH G 5 283 38 HOH HOH . RA 6 HOH G 6 284 57 HOH HOH . RA 6 HOH G 7 285 73 HOH HOH . RA 6 HOH G 8 286 81 HOH HOH . SA 6 HOH H 1 104 28 HOH HOH . SA 6 HOH H 2 105 33 HOH HOH . SA 6 HOH H 3 106 77 HOH HOH . TA 6 HOH I 1 62 62 HOH HOH . UA 6 HOH J 1 280 2 HOH HOH . UA 6 HOH J 2 281 11 HOH HOH . UA 6 HOH J 3 282 18 HOH HOH . UA 6 HOH J 4 283 26 HOH HOH . UA 6 HOH J 5 284 29 HOH HOH . UA 6 HOH J 6 285 40 HOH HOH . UA 6 HOH J 7 286 41 HOH HOH . UA 6 HOH J 8 287 58 HOH HOH . UA 6 HOH J 9 288 60 HOH HOH . UA 6 HOH J 10 289 66 HOH HOH . VA 6 HOH K 1 103 7 HOH HOH . VA 6 HOH K 2 104 23 HOH HOH . VA 6 HOH K 3 105 49 HOH HOH . VA 6 HOH K 4 106 64 HOH HOH . VA 6 HOH K 5 107 70 HOH HOH . WA 6 HOH L 1 56 56 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . T 4 11.624 -33.17 24.172 1 49.57 ? C1 GOL 279 D 1 HETATM 2 O O1 GOL . . . T 4 10.237 -32.999 24.379 1 50.14 ? O1 GOL 279 D 1 HETATM 3 C C2 GOL . . . T 4 12.316 -32.852 25.474 1 49.49 ? C2 GOL 279 D 1 HETATM 4 O O2 GOL . . . T 4 11.49 -31.94 26.155 1 50.95 ? O2 GOL 279 D 1 HETATM 5 C C3 GOL . . . T 4 13.669 -32.226 25.209 1 48.82 ? C3 GOL 279 D 1 HETATM 6 O O3 GOL . . . T 4 14.611 -32.805 26.079 1 48.35 ? O3 GOL 279 D 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 51 _model_server_stats.query_time_ms 246 _model_server_stats.encode_time_ms 19 _model_server_stats.element_count 6 #