data_3CD2
#
_model_server_result.job_id            iknQQg9Z8_1KAf3QJPG8wA 
_model_server_result.datetime_utc      '2024-11-24 08:34:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3cd2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":207}' 
#
_entry.id    3CD2 
#
_exptl.entry_id    3CD2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          94.89 
_cell.angle_gamma         90 
_cell.entry_id            3CD2 
_cell.length_a            37.425 
_cell.length_b            43.556 
_cell.length_c            61.659 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3CD2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 294 n n 
PA O2A NAP sing 295 n n 
PA O5B NAP sing 296 n n 
PA O3 NAP sing 297 n n 
O2A HOA2 NAP sing 298 n n 
O5B C5B NAP sing 299 n n 
C5B C4B NAP sing 300 n n 
C5B H51A NAP sing 301 n n 
C5B H52A NAP sing 302 n n 
C4B O4B NAP sing 303 n n 
C4B C3B NAP sing 304 n n 
C4B H4B NAP sing 305 n n 
O4B C1B NAP sing 306 n n 
C3B O3B NAP sing 307 n n 
C3B C2B NAP sing 308 n n 
C3B H3B NAP sing 309 n n 
O3B HO3A NAP sing 310 n n 
C2B O2B NAP sing 311 n n 
C2B C1B NAP sing 312 n n 
C2B H2B NAP sing 313 n n 
O2B P2B NAP sing 314 n n 
C1B N9A NAP sing 315 n n 
C1B H1B NAP sing 316 n n 
N9A C8A NAP sing 317 n y 
N9A C4A NAP sing 318 n y 
C8A N7A NAP doub 319 n y 
C8A H8A NAP sing 320 n n 
N7A C5A NAP sing 321 n y 
C5A C6A NAP sing 322 n y 
C5A C4A NAP doub 323 n y 
C6A N6A NAP sing 324 n n 
C6A N1A NAP doub 325 n y 
N6A H61A NAP sing 326 n n 
N6A H62A NAP sing 327 n n 
N1A C2A NAP sing 328 n y 
C2A N3A NAP doub 329 n y 
C2A H2A NAP sing 330 n n 
N3A C4A NAP sing 331 n y 
O3 PN NAP sing 332 n n 
PN O1N NAP doub 333 n n 
PN O2N NAP sing 334 n n 
PN O5D NAP sing 335 n n 
O5D C5D NAP sing 336 n n 
C5D C4D NAP sing 337 n n 
C5D H51N NAP sing 338 n n 
C5D H52N NAP sing 339 n n 
C4D O4D NAP sing 340 n n 
C4D C3D NAP sing 341 n n 
C4D H4D NAP sing 342 n n 
O4D C1D NAP sing 343 n n 
C3D O3D NAP sing 344 n n 
C3D C2D NAP sing 345 n n 
C3D H3D NAP sing 346 n n 
O3D HO3N NAP sing 347 n n 
C2D O2D NAP sing 348 n n 
C2D C1D NAP sing 349 n n 
C2D H2D NAP sing 350 n n 
O2D HO2N NAP sing 351 n n 
C1D N1N NAP sing 352 n n 
C1D H1D NAP sing 353 n n 
N1N C2N NAP sing 354 n y 
N1N C6N NAP doub 355 n y 
C2N C3N NAP doub 356 n y 
C2N H2N NAP sing 357 n n 
C3N C7N NAP sing 358 n n 
C3N C4N NAP sing 359 n y 
C7N O7N NAP doub 360 n n 
C7N N7N NAP sing 361 n n 
N7N H71N NAP sing 362 n n 
N7N H72N NAP sing 363 n n 
C4N C5N NAP doub 364 n y 
C4N H4N NAP sing 365 n n 
C5N C6N NAP sing 366 n y 
C5N H5N NAP sing 367 n n 
C6N H6N NAP sing 368 n n 
P2B O1X NAP doub 369 n n 
P2B O2X NAP sing 370 n n 
P2B O3X NAP sing 371 n n 
O2X HOP2 NAP sing 372 n n 
O3X HOP3 NAP sing 373 n n 
#
_atom_sites.entry_id                     3CD2 
_atom_sites.fract_transf_matrix[1][1]    0.02672 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002285 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.022959 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016277 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NAP A 1 207 207 NAP NAP . 
C 3 MTX A 1 307 307 MTX MTX . 
D 4 HOH A 1 208 208 HOH HOH . 
D 4 HOH A 2 209 209 HOH HOH . 
D 4 HOH A 3 210 210 HOH HOH . 
D 4 HOH A 4 211 211 HOH HOH . 
D 4 HOH A 5 212 212 HOH HOH . 
D 4 HOH A 6 213 213 HOH HOH . 
D 4 HOH A 7 214 214 HOH HOH . 
D 4 HOH A 8 215 215 HOH HOH . 
D 4 HOH A 9 216 216 HOH HOH . 
D 4 HOH A 10 217 217 HOH HOH . 
D 4 HOH A 11 218 218 HOH HOH . 
D 4 HOH A 12 219 219 HOH HOH . 
D 4 HOH A 13 220 220 HOH HOH . 
D 4 HOH A 14 221 221 HOH HOH . 
D 4 HOH A 15 222 222 HOH HOH . 
D 4 HOH A 16 223 223 HOH HOH . 
D 4 HOH A 17 224 224 HOH HOH . 
D 4 HOH A 18 225 225 HOH HOH . 
D 4 HOH A 19 226 226 HOH HOH . 
D 4 HOH A 20 227 227 HOH HOH . 
D 4 HOH A 21 228 228 HOH HOH . 
D 4 HOH A 22 229 229 HOH HOH . 
D 4 HOH A 23 230 230 HOH HOH . 
D 4 HOH A 24 231 231 HOH HOH . 
D 4 HOH A 25 232 232 HOH HOH . 
D 4 HOH A 26 233 233 HOH HOH . 
D 4 HOH A 27 234 234 HOH HOH . 
D 4 HOH A 28 235 235 HOH HOH . 
D 4 HOH A 29 236 236 HOH HOH . 
D 4 HOH A 30 237 237 HOH HOH . 
D 4 HOH A 31 238 238 HOH HOH . 
D 4 HOH A 32 239 239 HOH HOH . 
D 4 HOH A 33 240 240 HOH HOH . 
D 4 HOH A 34 241 241 HOH HOH . 
D 4 HOH A 35 242 242 HOH HOH . 
D 4 HOH A 36 243 243 HOH HOH . 
D 4 HOH A 37 244 244 HOH HOH . 
D 4 HOH A 38 245 245 HOH HOH . 
D 4 HOH A 39 246 246 HOH HOH . 
D 4 HOH A 40 247 247 HOH HOH . 
D 4 HOH A 41 248 248 HOH HOH . 
D 4 HOH A 42 249 249 HOH HOH . 
D 4 HOH A 43 250 250 HOH HOH . 
D 4 HOH A 44 251 251 HOH HOH . 
D 4 HOH A 45 252 252 HOH HOH . 
D 4 HOH A 46 253 253 HOH HOH . 
D 4 HOH A 47 254 254 HOH HOH . 
D 4 HOH A 48 255 255 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . . . B 2 15.675 9.685 22.857 1 17.64 ? PA NAP 207 A 1 
HETATM 2 O O1A NAP . . . B 2 15.732 9.965 21.404 1 18.01 ? O1A NAP 207 A 1 
HETATM 3 O O2A NAP . . . B 2 14.474 9.548 23.663 1 19.43 ? O2A NAP 207 A 1 
HETATM 4 O O5B NAP . . . B 2 16.54 11.012 23.486 1 19.32 ? O5B NAP 207 A 1 
HETATM 5 C C5B NAP . . . B 2 16.45 11.073 24.991 1 17.28 ? C5B NAP 207 A 1 
HETATM 6 C C4B NAP . . . B 2 16.474 12.606 25.218 1 17.63 ? C4B NAP 207 A 1 
HETATM 7 O O4B NAP . . . B 2 15.353 13.104 24.928 1 17.27 ? O4B NAP 207 A 1 
HETATM 8 C C3B NAP . . . B 2 16.658 12.829 26.819 1 17.57 ? C3B NAP 207 A 1 
HETATM 9 O O3B NAP . . . B 2 18.156 12.855 26.852 1 18.77 ? O3B NAP 207 A 1 
HETATM 10 C C2B NAP . . . B 2 15.978 14.208 26.897 1 17.12 ? C2B NAP 207 A 1 
HETATM 11 O O2B NAP . . . B 2 16.594 15.279 26.281 1 17.64 ? O2B NAP 207 A 1 
HETATM 12 C C1B NAP . . . B 2 14.796 13.93 25.962 1 17.01 ? C1B NAP 207 A 1 
HETATM 13 N N9A NAP . . . B 2 13.632 13.322 26.547 1 16.89 ? N9A NAP 207 A 1 
HETATM 14 C C8A NAP . . . B 2 13.1 12.141 26.18 1 17.37 ? C8A NAP 207 A 1 
HETATM 15 N N7A NAP . . . B 2 12.011 11.833 26.854 1 17.53 ? N7A NAP 207 A 1 
HETATM 16 C C5A NAP . . . B 2 11.899 13.014 27.673 1 17.43 ? C5A NAP 207 A 1 
HETATM 17 C C6A NAP . . . B 2 10.87 13.452 28.761 1 17.56 ? C6A NAP 207 A 1 
HETATM 18 N N6A NAP . . . B 2 9.864 12.587 28.981 1 18.6 ? N6A NAP 207 A 1 
HETATM 19 N N1A NAP . . . B 2 11.084 14.555 29.369 1 15.76 ? N1A NAP 207 A 1 
HETATM 20 C C2A NAP . . . B 2 12.154 15.251 28.985 1 16.2 ? C2A NAP 207 A 1 
HETATM 21 N N3A NAP . . . B 2 13.101 15.028 28.096 1 16.36 ? N3A NAP 207 A 1 
HETATM 22 C C4A NAP . . . B 2 12.891 13.848 27.476 1 17.22 ? C4A NAP 207 A 1 
HETATM 23 O O3 NAP . . . B 2 16.83 8.699 23.166 1 18.3 ? O3 NAP 207 A 1 
HETATM 24 P PN NAP . . . B 2 17.473 7.515 23.959 1 18.6 ? PN NAP 207 A 1 
HETATM 25 O O1N NAP . . . B 2 16.733 6.898 25.016 1 19.75 ? O1N NAP 207 A 1 
HETATM 26 O O2N NAP . . . B 2 18.763 8.014 24.386 1 19.94 ? O2N NAP 207 A 1 
HETATM 27 O O5D NAP . . . B 2 17.725 6.425 22.802 1 15.39 ? O5D NAP 207 A 1 
HETATM 28 C C5D NAP . . . B 2 18.379 6.674 21.584 1 12.75 ? C5D NAP 207 A 1 
HETATM 29 C C4D NAP . . . B 2 18.452 5.216 21.112 1 11.19 ? C4D NAP 207 A 1 
HETATM 30 O O4D NAP . . . B 2 17.118 4.825 20.582 1 10.37 ? O4D NAP 207 A 1 
HETATM 31 C C3D NAP . . . B 2 19.471 4.995 19.962 1 11.92 ? C3D NAP 207 A 1 
HETATM 32 O O3D NAP . . . B 2 19.763 3.562 19.86 1 13.35 ? O3D NAP 207 A 1 
HETATM 33 C C2D NAP . . . B 2 18.521 5.433 18.761 1 10.35 ? C2D NAP 207 A 1 
HETATM 34 O O2D NAP . . . B 2 19.055 4.863 17.64 1 11.37 ? O2D NAP 207 A 1 
HETATM 35 C C1D NAP . . . B 2 17.346 4.554 19.14 1 9.95 ? C1D NAP 207 A 1 
HETATM 36 N N1N NAP . . . B 2 16.02 4.666 18.4 1 8.28 ? N1N NAP 207 A 1 
HETATM 37 C C2N NAP . . . B 2 15.424 3.486 17.911 1 7.16 ? C2N NAP 207 A 1 
HETATM 38 C C3N NAP . . . B 2 14.234 3.555 17.286 1 6.14 ? C3N NAP 207 A 1 
HETATM 39 C C7N NAP . . . B 2 13.716 2.258 16.762 1 5.04 ? C7N NAP 207 A 1 
HETATM 40 O O7N NAP . . . B 2 12.692 2.219 16.178 1 3.21 ? O7N NAP 207 A 1 
HETATM 41 N N7N NAP . . . B 2 14.428 1.126 16.952 1 5.23 ? N7N NAP 207 A 1 
HETATM 42 C C4N NAP . . . B 2 13.504 4.886 17.04 1 7.34 ? C4N NAP 207 A 1 
HETATM 43 C C5N NAP . . . B 2 14.25 6.048 17.625 1 6.97 ? C5N NAP 207 A 1 
HETATM 44 C C6N NAP . . . B 2 15.405 5.919 18.259 1 8.53 ? C6N NAP 207 A 1 
HETATM 45 P P2B NAP . . . B 2 17.496 16.675 26.735 1 18.46 ? P2B NAP 207 A 1 
HETATM 46 O O1X NAP . . . B 2 16.725 17.296 27.835 1 19.11 ? O1X NAP 207 A 1 
HETATM 47 O O2X NAP . . . B 2 17.35 17.427 25.483 1 21.12 ? O2X NAP 207 A 1 
HETATM 48 O O3X NAP . . . B 2 18.787 16.127 27.141 1 19.48 ? O3X NAP 207 A 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           221 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           48 
#