data_3CD2
#
_model_server_result.job_id            siEi3ozd94Nwkn-_7WNEZQ 
_model_server_result.datetime_utc      '2024-11-07 07:44:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3cd2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":307}' 
#
_entry.id    3CD2 
#
_exptl.entry_id    3CD2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              454.439 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            METHOTREXATE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          94.89 
_cell.angle_gamma         90 
_cell.entry_id            3CD2 
_cell.length_a            37.425 
_cell.length_b            43.556 
_cell.length_c            61.659 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3CD2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C20 H22 N8 O5' 
_chem_comp.formula_weight    454.439 
_chem_comp.id                MTX 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              METHOTREXATE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 MTX doub 237 n y 
N1 C8A MTX sing 238 n y 
C2 NA2 MTX sing 239 n n 
C2 N3 MTX sing 240 n y 
NA2 HN21 MTX sing 241 n n 
NA2 HN22 MTX sing 242 n n 
N3 C4 MTX doub 243 n y 
C4 NA4 MTX sing 244 n n 
C4 C4A MTX sing 245 n y 
NA4 HN41 MTX sing 246 n n 
NA4 HN42 MTX sing 247 n n 
C4A N5 MTX sing 248 n y 
C4A C8A MTX doub 249 n y 
N5 C6 MTX doub 250 n y 
C6 C7 MTX sing 251 n y 
C6 C9 MTX sing 252 n n 
C7 N8 MTX doub 253 n y 
C7 H7 MTX sing 254 n n 
N8 C8A MTX sing 255 n y 
C9 N10 MTX sing 256 n n 
C9 H91 MTX sing 257 n n 
C9 H92 MTX sing 258 n n 
N10 CM MTX sing 259 n n 
N10 C14 MTX sing 260 n n 
CM HM1 MTX sing 261 n n 
CM HM2 MTX sing 262 n n 
CM HM3 MTX sing 263 n n 
C11 C12 MTX doub 264 n y 
C11 C16 MTX sing 265 n y 
C11 C MTX sing 266 n n 
C12 C13 MTX sing 267 n y 
C12 H12 MTX sing 268 n n 
C13 C14 MTX doub 269 n y 
C13 H13 MTX sing 270 n n 
C14 C15 MTX sing 271 n y 
C15 C16 MTX doub 272 n y 
C15 H15 MTX sing 273 n n 
C16 H16 MTX sing 274 n n 
C O MTX doub 275 n n 
C N MTX sing 276 n n 
N CA MTX sing 277 n n 
N HN MTX sing 278 n n 
CA CT MTX sing 279 n n 
CA CB MTX sing 280 n n 
CA HA MTX sing 281 n n 
CT O1 MTX doub 282 n n 
CT O2 MTX sing 283 n n 
O2 HO2 MTX sing 284 n n 
CB CG MTX sing 285 n n 
CB HB1 MTX sing 286 n n 
CB HB2 MTX sing 287 n n 
CG CD MTX sing 288 n n 
CG HG1 MTX sing 289 n n 
CG HG2 MTX sing 290 n n 
CD OE1 MTX doub 291 n n 
CD OE2 MTX sing 292 n n 
OE2 HOE2 MTX sing 293 n n 
#
_atom_sites.entry_id                     3CD2 
_atom_sites.fract_transf_matrix[1][1]    0.02672 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002285 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.022959 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016277 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NAP A 1 207 207 NAP NAP . 
C 3 MTX A 1 307 307 MTX MTX . 
D 4 HOH A 1 208 208 HOH HOH . 
D 4 HOH A 2 209 209 HOH HOH . 
D 4 HOH A 3 210 210 HOH HOH . 
D 4 HOH A 4 211 211 HOH HOH . 
D 4 HOH A 5 212 212 HOH HOH . 
D 4 HOH A 6 213 213 HOH HOH . 
D 4 HOH A 7 214 214 HOH HOH . 
D 4 HOH A 8 215 215 HOH HOH . 
D 4 HOH A 9 216 216 HOH HOH . 
D 4 HOH A 10 217 217 HOH HOH . 
D 4 HOH A 11 218 218 HOH HOH . 
D 4 HOH A 12 219 219 HOH HOH . 
D 4 HOH A 13 220 220 HOH HOH . 
D 4 HOH A 14 221 221 HOH HOH . 
D 4 HOH A 15 222 222 HOH HOH . 
D 4 HOH A 16 223 223 HOH HOH . 
D 4 HOH A 17 224 224 HOH HOH . 
D 4 HOH A 18 225 225 HOH HOH . 
D 4 HOH A 19 226 226 HOH HOH . 
D 4 HOH A 20 227 227 HOH HOH . 
D 4 HOH A 21 228 228 HOH HOH . 
D 4 HOH A 22 229 229 HOH HOH . 
D 4 HOH A 23 230 230 HOH HOH . 
D 4 HOH A 24 231 231 HOH HOH . 
D 4 HOH A 25 232 232 HOH HOH . 
D 4 HOH A 26 233 233 HOH HOH . 
D 4 HOH A 27 234 234 HOH HOH . 
D 4 HOH A 28 235 235 HOH HOH . 
D 4 HOH A 29 236 236 HOH HOH . 
D 4 HOH A 30 237 237 HOH HOH . 
D 4 HOH A 31 238 238 HOH HOH . 
D 4 HOH A 32 239 239 HOH HOH . 
D 4 HOH A 33 240 240 HOH HOH . 
D 4 HOH A 34 241 241 HOH HOH . 
D 4 HOH A 35 242 242 HOH HOH . 
D 4 HOH A 36 243 243 HOH HOH . 
D 4 HOH A 37 244 244 HOH HOH . 
D 4 HOH A 38 245 245 HOH HOH . 
D 4 HOH A 39 246 246 HOH HOH . 
D 4 HOH A 40 247 247 HOH HOH . 
D 4 HOH A 41 248 248 HOH HOH . 
D 4 HOH A 42 249 249 HOH HOH . 
D 4 HOH A 43 250 250 HOH HOH . 
D 4 HOH A 44 251 251 HOH HOH . 
D 4 HOH A 45 252 252 HOH HOH . 
D 4 HOH A 46 253 253 HOH HOH . 
D 4 HOH A 47 254 254 HOH HOH . 
D 4 HOH A 48 255 255 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 MTX . . . C 3 11.593 2.583 11.946 1 10.79 ? N1 MTX 307 A 1 
HETATM 2 C C2 MTX . . . C 3 10.353 2.362 12.494 1 11.32 ? C2 MTX 307 A 1 
HETATM 3 N NA2 MTX . . . C 3 9.627 1.43 11.991 1 10.51 ? NA2 MTX 307 A 1 
HETATM 4 N N3 MTX . . . C 3 9.878 3.083 13.537 1 11.12 ? N3 MTX 307 A 1 
HETATM 5 C C4 MTX . . . C 3 10.641 4.052 14.019 1 12.06 ? C4 MTX 307 A 1 
HETATM 6 N NA4 MTX . . . C 3 10.194 4.77 15.014 1 13.71 ? NA4 MTX 307 A 1 
HETATM 7 C C4A MTX . . . C 3 11.95 4.361 13.475 1 12.42 ? C4A MTX 307 A 1 
HETATM 8 N N5 MTX . . . C 3 12.707 5.35 13.971 1 13.99 ? N5 MTX 307 A 1 
HETATM 9 C C6 MTX . . . C 3 13.882 5.545 13.393 1 14.9 ? C6 MTX 307 A 1 
HETATM 10 C C7 MTX . . . C 3 14.311 4.758 12.35 1 13.7 ? C7 MTX 307 A 1 
HETATM 11 N N8 MTX . . . C 3 13.57 3.755 11.853 1 13.01 ? N8 MTX 307 A 1 
HETATM 12 C C8A MTX . . . C 3 12.389 3.57 12.413 1 12.25 ? C8A MTX 307 A 1 
HETATM 13 C C9 MTX . . . C 3 14.767 6.635 13.965 1 16.09 ? C9 MTX 307 A 1 
HETATM 14 N N10 MTX . . . C 3 15.769 7.129 13.048 1 17.34 ? N10 MTX 307 A 1 
HETATM 15 C CM MTX . . . C 3 17.186 7.132 13.429 1 16.87 ? CM MTX 307 A 1 
HETATM 16 C C11 MTX . . . C 3 14.819 8.703 9.293 1 18.52 ? C11 MTX 307 A 1 
HETATM 17 C C12 MTX . . . C 3 13.844 8.557 10.262 1 18.46 ? C12 MTX 307 A 1 
HETATM 18 C C13 MTX . . . C 3 14.132 8.061 11.525 1 17.91 ? C13 MTX 307 A 1 
HETATM 19 C C14 MTX . . . C 3 15.425 7.655 11.833 1 16.72 ? C14 MTX 307 A 1 
HETATM 20 C C15 MTX . . . C 3 16.417 7.801 10.852 1 17.03 ? C15 MTX 307 A 1 
HETATM 21 C C16 MTX . . . C 3 16.118 8.302 9.613 1 17.63 ? C16 MTX 307 A 1 
HETATM 22 C C MTX . . . C 3 14.506 9.242 7.969 1 19.53 ? C MTX 307 A 1 
HETATM 23 O O MTX . . . C 3 15.405 9.773 7.293 1 20.92 ? O MTX 307 A 1 
HETATM 24 N N MTX . . . C 3 13.289 9.095 7.466 1 20.97 ? N MTX 307 A 1 
HETATM 25 C CA MTX . . . C 3 12.947 9.538 6.1 1 21.71 ? CA MTX 307 A 1 
HETATM 26 C CT MTX . . . C 3 11.572 10.152 6.229 1 20.99 ? CT MTX 307 A 1 
HETATM 27 O O1 MTX . . . C 3 11.346 11.115 5.522 1 21.47 ? O1 MTX 307 A 1 
HETATM 28 O O2 MTX . . . C 3 10.789 9.672 7.026 1 20.57 ? O2 MTX 307 A 1 
HETATM 29 C CB MTX . . . C 3 13.019 8.456 5.073 1 23.79 ? CB MTX 307 A 1 
HETATM 30 C CG MTX . . . C 3 14.029 8.583 4.006 1 27.12 ? CG MTX 307 A 1 
HETATM 31 C CD MTX . . . C 3 14.078 7.502 3.02 1 28.88 ? CD MTX 307 A 1 
HETATM 32 O OE1 MTX . . . C 3 15.211 6.987 2.557 1 29.49 ? OE1 MTX 307 A 1 
HETATM 33 O OE2 MTX . . . C 3 13.044 6.864 2.43 1 30.71 ? OE2 MTX 307 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           355 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           33 
#