data_3CDH # _model_server_result.job_id pwGnQBJwE5sUIOwBtLt5uA _model_server_result.datetime_utc '2024-11-16 21:34:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3cdh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":202}' # _entry.id 3CDH # _exptl.entry_id 3CDH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3CDH _cell.length_a 124.14 _cell.length_b 124.14 _cell.length_c 140.186 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3CDH _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M 1 1 A,B,C,D,E,F,G,H,I,J,K,L,M 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_556 x-y,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 140.186 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ALA 57 A ALA 54 1_555 A N MSE 58 A MSE 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale2 A C MSE 58 A MSE 55 1_555 A N MSE 59 A MSE 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale3 A C MSE 59 A MSE 56 1_555 A N ILE 60 A ILE 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale4 A C LEU 68 A LEU 65 1_555 A N MSE 69 A MSE 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale5 A C MSE 69 A MSE 66 1_555 A N GLU 70 A GLU 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.311 ? covale ? covale6 A C ARG 73 A ARG 70 1_555 A N MSE 74 A MSE 71 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale7 A C ARG 73 A ARG 70 1_555 A N MSE 74 A MSE 71 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale8 A C MSE 74 A MSE 71 1_555 A N THR 75 A THR 72 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.332 ? covale ? covale9 A C MSE 74 A MSE 71 1_555 A N THR 75 A THR 72 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.335 ? covale ? covale10 A C GLN 80 A GLN 77 1_555 A N MSE 81 A MSE 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale11 A C MSE 81 A MSE 78 1_555 A N ASP 82 A ASP 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale12 B C ALA 57 B ALA 54 1_555 B N MSE 58 B MSE 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale13 B C MSE 58 B MSE 55 1_555 B N MSE 59 B MSE 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale14 B C MSE 59 B MSE 56 1_555 B N ILE 60 B ILE 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale15 B C LEU 68 B LEU 65 1_555 B N MSE 69 B MSE 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale16 B C MSE 69 B MSE 66 1_555 B N GLU 70 B GLU 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale17 B C ARG 73 B ARG 70 1_555 B N MSE 74 B MSE 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale18 B C MSE 74 B MSE 71 1_555 B N THR 75 B THR 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.313 ? covale ? covale19 B C GLN 80 B GLN 77 1_555 B N MSE 81 B MSE 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale20 B C MSE 81 B MSE 78 1_555 B N ASP 82 B ASP 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3CDH _atom_sites.fract_transf_matrix[1][1] 0.008055 _atom_sites.fract_transf_matrix[1][2] 0.004651 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009302 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007133 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 201 201 SO4 SO4 . D 2 SO4 A 1 202 202 SO4 SO4 . E 2 SO4 A 1 203 203 SO4 SO4 . F 2 SO4 A 1 204 204 SO4 SO4 . G 2 SO4 A 1 206 206 SO4 SO4 . H 3 GOL A 1 207 207 GOL GOL . I 2 SO4 B 1 205 205 SO4 SO4 . J 3 GOL B 1 208 208 GOL GOL . K 3 GOL B 1 209 209 GOL GOL . L 4 HOH A 1 208 1 HOH HOH . L 4 HOH A 2 209 2 HOH HOH . L 4 HOH A 3 210 5 HOH HOH . L 4 HOH A 4 211 6 HOH HOH . L 4 HOH A 5 212 7 HOH HOH . L 4 HOH A 6 213 8 HOH HOH . L 4 HOH A 7 214 9 HOH HOH . L 4 HOH A 8 215 10 HOH HOH . L 4 HOH A 9 216 11 HOH HOH . L 4 HOH A 10 217 12 HOH HOH . L 4 HOH A 11 218 13 HOH HOH . L 4 HOH A 12 219 14 HOH HOH . L 4 HOH A 13 220 15 HOH HOH . L 4 HOH A 14 221 16 HOH HOH . L 4 HOH A 15 222 17 HOH HOH . L 4 HOH A 16 223 24 HOH HOH . L 4 HOH A 17 224 29 HOH HOH . L 4 HOH A 18 225 31 HOH HOH . L 4 HOH A 19 226 34 HOH HOH . L 4 HOH A 20 227 35 HOH HOH . L 4 HOH A 21 228 39 HOH HOH . L 4 HOH A 22 229 47 HOH HOH . L 4 HOH A 23 230 49 HOH HOH . L 4 HOH A 24 231 51 HOH HOH . L 4 HOH A 25 232 53 HOH HOH . L 4 HOH A 26 233 55 HOH HOH . L 4 HOH A 27 234 56 HOH HOH . L 4 HOH A 28 235 57 HOH HOH . L 4 HOH A 29 236 58 HOH HOH . L 4 HOH A 30 237 72 HOH HOH . L 4 HOH A 31 238 73 HOH HOH . L 4 HOH A 32 239 76 HOH HOH . L 4 HOH A 33 240 77 HOH HOH . L 4 HOH A 34 241 79 HOH HOH . L 4 HOH A 35 242 80 HOH HOH . L 4 HOH A 36 243 83 HOH HOH . L 4 HOH A 37 244 84 HOH HOH . L 4 HOH A 38 245 85 HOH HOH . L 4 HOH A 39 246 86 HOH HOH . L 4 HOH A 40 247 87 HOH HOH . L 4 HOH A 41 248 88 HOH HOH . L 4 HOH A 42 249 90 HOH HOH . L 4 HOH A 43 250 91 HOH HOH . L 4 HOH A 44 251 101 HOH HOH . L 4 HOH A 45 252 103 HOH HOH . L 4 HOH A 46 253 107 HOH HOH . L 4 HOH A 47 254 108 HOH HOH . L 4 HOH A 48 255 109 HOH HOH . L 4 HOH A 49 256 110 HOH HOH . M 4 HOH B 1 210 3 HOH HOH . M 4 HOH B 2 211 4 HOH HOH . M 4 HOH B 3 212 18 HOH HOH . M 4 HOH B 4 213 19 HOH HOH . M 4 HOH B 5 214 20 HOH HOH . M 4 HOH B 6 215 21 HOH HOH . M 4 HOH B 7 216 22 HOH HOH . M 4 HOH B 8 217 23 HOH HOH . M 4 HOH B 9 218 25 HOH HOH . M 4 HOH B 10 219 26 HOH HOH . M 4 HOH B 11 220 27 HOH HOH . M 4 HOH B 12 221 28 HOH HOH . M 4 HOH B 13 222 30 HOH HOH . M 4 HOH B 14 223 32 HOH HOH . M 4 HOH B 15 224 33 HOH HOH . M 4 HOH B 16 225 36 HOH HOH . M 4 HOH B 17 226 37 HOH HOH . M 4 HOH B 18 227 38 HOH HOH . M 4 HOH B 19 228 40 HOH HOH . M 4 HOH B 20 229 41 HOH HOH . M 4 HOH B 21 230 42 HOH HOH . M 4 HOH B 22 231 43 HOH HOH . M 4 HOH B 23 232 44 HOH HOH . M 4 HOH B 24 233 45 HOH HOH . M 4 HOH B 25 234 46 HOH HOH . M 4 HOH B 26 235 48 HOH HOH . M 4 HOH B 27 236 50 HOH HOH . M 4 HOH B 28 237 52 HOH HOH . M 4 HOH B 29 238 54 HOH HOH . M 4 HOH B 30 239 59 HOH HOH . M 4 HOH B 31 240 60 HOH HOH . M 4 HOH B 32 241 61 HOH HOH . M 4 HOH B 33 242 62 HOH HOH . M 4 HOH B 34 243 63 HOH HOH . M 4 HOH B 35 244 64 HOH HOH . M 4 HOH B 36 245 65 HOH HOH . M 4 HOH B 37 246 66 HOH HOH . M 4 HOH B 38 247 67 HOH HOH . M 4 HOH B 39 248 68 HOH HOH . M 4 HOH B 40 249 69 HOH HOH . M 4 HOH B 41 250 70 HOH HOH . M 4 HOH B 42 251 71 HOH HOH . M 4 HOH B 43 252 74 HOH HOH . M 4 HOH B 44 253 75 HOH HOH . M 4 HOH B 45 254 78 HOH HOH . M 4 HOH B 46 255 81 HOH HOH . M 4 HOH B 47 256 82 HOH HOH . M 4 HOH B 48 257 89 HOH HOH . M 4 HOH B 49 258 92 HOH HOH . M 4 HOH B 50 259 93 HOH HOH . M 4 HOH B 51 260 94 HOH HOH . M 4 HOH B 52 261 95 HOH HOH . M 4 HOH B 53 262 96 HOH HOH . M 4 HOH B 54 263 97 HOH HOH . M 4 HOH B 55 264 98 HOH HOH . M 4 HOH B 56 265 99 HOH HOH . M 4 HOH B 57 266 100 HOH HOH . M 4 HOH B 58 267 102 HOH HOH . M 4 HOH B 59 268 104 HOH HOH . M 4 HOH B 60 269 105 HOH HOH . M 4 HOH B 61 270 106 HOH HOH . M 4 HOH B 62 271 111 HOH HOH . M 4 HOH B 63 272 112 HOH HOH . M 4 HOH B 64 273 113 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . D 2 64.417 2.891 83.653 1 65.09 ? S SO4 202 A 1 HETATM 2 O O1 SO4 . . . D 2 65.249 2.536 82.487 1 62.1 ? O1 SO4 202 A 1 HETATM 3 O O2 SO4 . . . D 2 63.362 1.907 83.903 1 59.9 ? O2 SO4 202 A 1 HETATM 4 O O3 SO4 . . . D 2 65.298 3.095 84.859 1 63.2 ? O3 SO4 202 A 1 HETATM 5 O O4 SO4 . . . D 2 63.684 4.12 83.313 1 64.94 ? O4 SO4 202 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 5 #