data_3CDP
#
_model_server_result.job_id            0PVViu_EFo7P2Ixk87Fe8Q 
_model_server_result.datetime_utc      '2024-11-04 23:29:46' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3cdp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1}' 
#
_entry.id    3CDP 
#
_exptl.entry_id    3CDP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              276.715 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2S)-2-(4-chlorophenoxy)-3-phenylpropanoic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          103.01 
_cell.angle_gamma         90 
_cell.entry_id            3CDP 
_cell.length_a            93.21 
_cell.length_b            61.65 
_cell.length_c            118.36 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3CDP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
PISA monomeric 1 software_defined_assembly 2 
PISA monomeric 1 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E 1 1 
A,C,D 2 1 
B,E 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C15 H13 Cl O3' 
_chem_comp.formula_weight    276.715 
_chem_comp.id                YRG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2S)-2-(4-chlorophenoxy)-3-phenylpropanoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAR CAK YRG doub 348 n y 
CAI CAK YRG sing 349 n y 
CAK HAK YRG sing 350 n n 
CAP CAI YRG doub 351 n y 
CAI HAI YRG sing 352 n n 
CAJ CAP YRG sing 353 n y 
CLAC CAP YRG sing 354 n n 
CAJ CAL YRG doub 355 n y 
CAJ HAJ YRG sing 356 n n 
CAL CAR YRG sing 357 n y 
CAL HAL YRG sing 358 n n 
OAN CAR YRG sing 359 n n 
OAN CAS YRG sing 360 n n 
CAM CAS YRG sing 361 n n 
CAS CAO YRG sing 362 n n 
CAS HAS YRG sing 363 n n 
CAO OAA YRG doub 364 n n 
CAO OAB YRG sing 365 n n 
OAB HOAB YRG sing 366 n n 
CAQ CAM YRG sing 367 n n 
CAM HAM YRG sing 368 n n 
CAM HAMA YRG sing 369 n n 
CAH CAQ YRG doub 370 n y 
CAG CAQ YRG sing 371 n y 
CAE CAG YRG doub 372 n y 
CAG HAG YRG sing 373 n n 
CAD CAE YRG sing 374 n y 
CAE HAE YRG sing 375 n n 
CAD CAF YRG doub 376 n y 
CAD HAD YRG sing 377 n n 
CAF CAH YRG sing 378 n y 
CAF HAF YRG sing 379 n n 
CAH HAH YRG sing 380 n n 
#
_atom_sites.entry_id                     3CDP 
_atom_sites.fract_transf_matrix[1][1]    0.010728 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002479 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016221 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008671 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 YRG A 1 1 1 YRG YRG . 
D 3 HOH A 1 477 1 HOH HOH . 
D 3 HOH A 2 478 2 HOH HOH . 
D 3 HOH A 3 479 3 HOH HOH . 
D 3 HOH A 4 480 4 HOH HOH . 
D 3 HOH A 5 481 5 HOH HOH . 
D 3 HOH A 6 482 6 HOH HOH . 
D 3 HOH A 7 483 8 HOH HOH . 
D 3 HOH A 8 484 9 HOH HOH . 
D 3 HOH A 9 485 11 HOH HOH . 
D 3 HOH A 10 486 12 HOH HOH . 
D 3 HOH A 11 487 13 HOH HOH . 
D 3 HOH A 12 488 14 HOH HOH . 
D 3 HOH A 13 489 15 HOH HOH . 
D 3 HOH A 14 490 17 HOH HOH . 
D 3 HOH A 15 491 18 HOH HOH . 
D 3 HOH A 16 492 19 HOH HOH . 
D 3 HOH A 17 493 20 HOH HOH . 
D 3 HOH A 18 494 21 HOH HOH . 
D 3 HOH A 19 495 23 HOH HOH . 
D 3 HOH A 20 496 25 HOH HOH . 
D 3 HOH A 21 497 29 HOH HOH . 
D 3 HOH A 22 498 36 HOH HOH . 
D 3 HOH A 23 499 37 HOH HOH . 
D 3 HOH A 24 500 38 HOH HOH . 
D 3 HOH A 25 501 45 HOH HOH . 
D 3 HOH A 26 502 47 HOH HOH . 
D 3 HOH A 27 503 48 HOH HOH . 
D 3 HOH A 28 504 51 HOH HOH . 
D 3 HOH A 29 505 53 HOH HOH . 
D 3 HOH A 30 506 54 HOH HOH . 
D 3 HOH A 31 507 55 HOH HOH . 
D 3 HOH A 32 508 56 HOH HOH . 
D 3 HOH A 33 509 60 HOH HOH . 
D 3 HOH A 34 510 61 HOH HOH . 
D 3 HOH A 35 511 63 HOH HOH . 
D 3 HOH A 36 512 64 HOH HOH . 
E 3 HOH B 1 7 7 HOH HOH . 
E 3 HOH B 2 10 10 HOH HOH . 
E 3 HOH B 3 16 16 HOH HOH . 
E 3 HOH B 4 22 22 HOH HOH . 
E 3 HOH B 5 24 24 HOH HOH . 
E 3 HOH B 6 26 26 HOH HOH . 
E 3 HOH B 7 27 27 HOH HOH . 
E 3 HOH B 8 28 28 HOH HOH . 
E 3 HOH B 9 30 30 HOH HOH . 
E 3 HOH B 10 31 31 HOH HOH . 
E 3 HOH B 11 32 32 HOH HOH . 
E 3 HOH B 12 33 33 HOH HOH . 
E 3 HOH B 13 34 34 HOH HOH . 
E 3 HOH B 14 35 35 HOH HOH . 
E 3 HOH B 15 39 39 HOH HOH . 
E 3 HOH B 16 40 40 HOH HOH . 
E 3 HOH B 17 41 41 HOH HOH . 
E 3 HOH B 18 42 42 HOH HOH . 
E 3 HOH B 19 43 43 HOH HOH . 
E 3 HOH B 20 44 44 HOH HOH . 
E 3 HOH B 21 46 46 HOH HOH . 
E 3 HOH B 22 49 49 HOH HOH . 
E 3 HOH B 23 50 50 HOH HOH . 
E 3 HOH B 24 52 52 HOH HOH . 
E 3 HOH B 25 57 57 HOH HOH . 
E 3 HOH B 26 58 58 HOH HOH . 
E 3 HOH B 27 59 59 HOH HOH . 
E 3 HOH B 28 62 62 HOH HOH . 
E 3 HOH B 29 65 65 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAK YRG . . . C 2 20.301 65.68 18.252 1 83.65 ? CAK YRG 1 A 1 
HETATM 2 C CAI YRG . . . C 2 21.002 66.878 18.18 1 84.39 ? CAI YRG 1 A 1 
HETATM 3 C CAP YRG . . . C 2 22.346 66.883 17.821 1 84.91 ? CAP YRG 1 A 1 
HETATM 4 CL CLAC YRG . . . C 2 23.199 68.381 17.661 1 85.03 ? CLAC YRG 1 A 1 
HETATM 5 C CAJ YRG . . . C 2 22.992 65.685 17.542 1 83.72 ? CAJ YRG 1 A 1 
HETATM 6 C CAL YRG . . . C 2 22.291 64.486 17.616 1 83.94 ? CAL YRG 1 A 1 
HETATM 7 C CAR YRG . . . C 2 20.946 64.481 17.965 1 84.25 ? CAR YRG 1 A 1 
HETATM 8 O OAN YRG . . . C 2 20.263 63.304 17.953 1 85.64 ? OAN YRG 1 A 1 
HETATM 9 C CAS YRG . . . C 2 19.114 63.308 18.814 1 85.11 ? CAS YRG 1 A 1 
HETATM 10 C CAO YRG . . . C 2 19.526 63.293 20.289 1 84.77 ? CAO YRG 1 A 1 
HETATM 11 O OAB YRG . . . C 2 18.63 63.078 21.133 1 85.61 ? OAB YRG 1 A 1 
HETATM 12 O OAA YRG . . . C 2 20.727 63.489 20.577 1 86.4 ? OAA YRG 1 A 1 
HETATM 13 C CAM YRG . . . C 2 18.29 62.049 18.537 1 83.35 ? CAM YRG 1 A 1 
HETATM 14 C CAQ YRG . . . C 2 17.912 61.95 17.057 1 82.94 ? CAQ YRG 1 A 1 
HETATM 15 C CAG YRG . . . C 2 16.591 62.123 16.66 1 82.86 ? CAG YRG 1 A 1 
HETATM 16 C CAE YRG . . . C 2 16.248 62.039 15.316 1 81.76 ? CAE YRG 1 A 1 
HETATM 17 C CAD YRG . . . C 2 17.23 61.78 14.366 1 83.21 ? CAD YRG 1 A 1 
HETATM 18 C CAF YRG . . . C 2 18.552 61.604 14.761 1 83.17 ? CAF YRG 1 A 1 
HETATM 19 C CAH YRG . . . C 2 18.893 61.689 16.106 1 83.29 ? CAH YRG 1 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           267 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           19 
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