data_3CDQ
#
_model_server_result.job_id            8DRTTeBG_eHCXzQXoaMfKw 
_model_server_result.datetime_utc      '2025-03-20 23:09:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3cdq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":600}' 
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_entry.id    3CDQ 
#
_exptl.entry_id    3CDQ 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              78.133 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            BETA-MERCAPTOETHANOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3CDQ 
_cell.length_a            60.927 
_cell.length_b            60.927 
_cell.length_c            97.389 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3CDQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O TYR 88 A TYR 88 1_555 D K K . A K 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.606 ? 
metalc ? metalc2 A O LEU 91 A LEU 91 1_555 D K K . A K 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.787 ? 
metalc ? metalc3 A OG SER 96 A SER 96 1_555 D K K . A K 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.825 ? 
#
_chem_comp.formula           'C2 H6 O S' 
_chem_comp.formula_weight    78.133 
_chem_comp.id                BME 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              BETA-MERCAPTOETHANOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 BME sing 70 n n 
C1 O1 BME sing 71 n n 
C1 H11 BME sing 72 n n 
C1 H12 BME sing 73 n n 
C2 S2 BME sing 74 n n 
C2 H21 BME sing 75 n n 
C2 H22 BME sing 76 n n 
O1 HO1 BME sing 77 n n 
S2 HS2 BME sing 78 n n 
#
_atom_sites.entry_id                     3CDQ 
_atom_sites.fract_transf_matrix[1][1]    0.016413 
_atom_sites.fract_transf_matrix[1][2]    0.009476 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018952 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010268 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CL A 1 168 168 CL CL . 
C 2 CL A 1 173 173 CL CL . 
D 3 K A 1 312 312 K K . 
E 4 BME A 1 600 600 BME BME . 
F 5 HOH A 1 171 171 HOH HOH . 
F 5 HOH A 2 174 174 HOH HOH . 
F 5 HOH A 3 175 175 HOH HOH . 
F 5 HOH A 4 176 176 HOH HOH . 
F 5 HOH A 5 177 177 HOH HOH . 
F 5 HOH A 6 178 178 HOH HOH . 
F 5 HOH A 7 179 179 HOH HOH . 
F 5 HOH A 8 180 180 HOH HOH . 
F 5 HOH A 9 181 181 HOH HOH . 
F 5 HOH A 10 182 182 HOH HOH . 
F 5 HOH A 11 190 190 HOH HOH . 
F 5 HOH A 12 191 191 HOH HOH . 
F 5 HOH A 13 192 192 HOH HOH . 
F 5 HOH A 14 193 193 HOH HOH . 
F 5 HOH A 15 195 195 HOH HOH . 
F 5 HOH A 16 196 196 HOH HOH . 
F 5 HOH A 17 198 198 HOH HOH . 
F 5 HOH A 18 200 200 HOH HOH . 
F 5 HOH A 19 201 201 HOH HOH . 
F 5 HOH A 20 203 203 HOH HOH . 
F 5 HOH A 21 208 208 HOH HOH . 
F 5 HOH A 22 209 209 HOH HOH . 
F 5 HOH A 23 210 210 HOH HOH . 
F 5 HOH A 24 211 211 HOH HOH . 
F 5 HOH A 25 213 213 HOH HOH . 
F 5 HOH A 26 218 218 HOH HOH . 
F 5 HOH A 27 219 219 HOH HOH . 
F 5 HOH A 28 223 223 HOH HOH . 
F 5 HOH A 29 228 228 HOH HOH . 
F 5 HOH A 30 229 229 HOH HOH . 
F 5 HOH A 31 231 231 HOH HOH . 
F 5 HOH A 32 232 232 HOH HOH . 
F 5 HOH A 33 237 237 HOH HOH . 
F 5 HOH A 34 238 238 HOH HOH . 
F 5 HOH A 35 241 241 HOH HOH . 
F 5 HOH A 36 242 242 HOH HOH . 
F 5 HOH A 37 244 244 HOH HOH . 
F 5 HOH A 38 248 248 HOH HOH . 
F 5 HOH A 39 253 253 HOH HOH . 
F 5 HOH A 40 256 256 HOH HOH . 
F 5 HOH A 41 259 259 HOH HOH . 
F 5 HOH A 42 266 266 HOH HOH . 
F 5 HOH A 43 267 267 HOH HOH . 
F 5 HOH A 44 270 270 HOH HOH . 
F 5 HOH A 45 273 273 HOH HOH . 
F 5 HOH A 46 274 274 HOH HOH . 
F 5 HOH A 47 281 281 HOH HOH . 
F 5 HOH A 48 284 284 HOH HOH . 
F 5 HOH A 49 286 286 HOH HOH . 
F 5 HOH A 50 293 293 HOH HOH . 
F 5 HOH A 51 296 296 HOH HOH . 
F 5 HOH A 52 299 299 HOH HOH . 
F 5 HOH A 53 303 303 HOH HOH . 
F 5 HOH A 54 304 304 HOH HOH . 
F 5 HOH A 55 306 306 HOH HOH . 
F 5 HOH A 56 311 311 HOH HOH . 
F 5 HOH A 57 313 313 HOH HOH . 
F 5 HOH A 58 314 314 HOH HOH . 
F 5 HOH A 59 317 317 HOH HOH . 
F 5 HOH A 60 318 318 HOH HOH . 
F 5 HOH A 61 319 319 HOH HOH . 
F 5 HOH A 62 320 320 HOH HOH . 
F 5 HOH A 63 321 321 HOH HOH . 
F 5 HOH A 64 322 322 HOH HOH . 
F 5 HOH A 65 324 324 HOH HOH . 
F 5 HOH A 66 329 329 HOH HOH . 
F 5 HOH A 67 334 334 HOH HOH . 
F 5 HOH A 68 335 335 HOH HOH . 
F 5 HOH A 69 343 343 HOH HOH . 
F 5 HOH A 70 345 345 HOH HOH . 
F 5 HOH A 71 351 351 HOH HOH . 
F 5 HOH A 72 352 352 HOH HOH . 
F 5 HOH A 73 358 358 HOH HOH . 
F 5 HOH A 74 361 361 HOH HOH . 
F 5 HOH A 75 362 362 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 BME . . . E 4 33.859 -0.613 12.865 0.5 5.19 ? C1 BME 600 A 1 
HETATM 2 C C2 BME . . . E 4 33.153 -1.838 13.452 0.5 27.09 ? C2 BME 600 A 1 
HETATM 3 O O1 BME . . . E 4 33.861 -0.701 11.463 0.5 16.76 ? O1 BME 600 A 1 
HETATM 4 S S2 BME . . . E 4 31.794 -1.358 14.537 0.5 29.12 ? S2 BME 600 A 1 
#
_model_server_stats.io_time_ms              5 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           263 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           4 
#