data_3CEJ # _model_server_result.job_id rFESJvE3RowW74i6XV1YmA _model_server_result.datetime_utc '2024-12-27 02:03:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3cej # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":832}' # _entry.id 3CEJ # _exptl.entry_id 3CEJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 247.142 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "PYRIDOXAL-5'-PHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3CEJ _cell.length_a 123.27 _cell.length_b 123.27 _cell.length_c 121.88 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3CEJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 658 A LYS 680 1_555 D C4A PLP . A PLP 832 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.854 ? covale ? covale2 B NZ LYS 658 B LYS 680 1_555 G C4A PLP . B PLP 832 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.489 ? # _chem_comp.formula 'C8 H10 N O6 P' _chem_comp.formula_weight 247.142 _chem_comp.id PLP _chem_comp.mon_nstd_flag . _chem_comp.name "PYRIDOXAL-5'-PHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'VITAMIN B6 Phosphate' # _atom_sites.entry_id 3CEJ _atom_sites.fract_transf_matrix[1][1] 0.008112 _atom_sites.fract_transf_matrix[1][2] 0.004684 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009367 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008205 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NBG A 1 1 1 NBG NBG . D 3 PLP A 1 832 832 PLP PLP . E 4 AVF A 1 833 833 AVF AVF . F 2 NBG B 1 2 2 NBG NBG . G 3 PLP B 1 832 832 PLP PLP . H 4 AVF B 1 833 833 AVF AVF . I 5 HOH A 1 834 834 HOH HOH . I 5 HOH A 2 835 835 HOH HOH . I 5 HOH A 3 836 836 HOH HOH . I 5 HOH A 4 837 837 HOH HOH . I 5 HOH A 5 838 838 HOH HOH . I 5 HOH A 6 839 839 HOH HOH . I 5 HOH A 7 840 840 HOH HOH . I 5 HOH A 8 841 841 HOH HOH . I 5 HOH A 9 842 842 HOH HOH . I 5 HOH A 10 843 843 HOH HOH . I 5 HOH A 11 844 844 HOH HOH . I 5 HOH A 12 846 846 HOH HOH . I 5 HOH A 13 847 847 HOH HOH . I 5 HOH A 14 848 848 HOH HOH . I 5 HOH A 15 849 849 HOH HOH . I 5 HOH A 16 850 850 HOH HOH . I 5 HOH A 17 851 851 HOH HOH . I 5 HOH A 18 852 852 HOH HOH . I 5 HOH A 19 853 853 HOH HOH . I 5 HOH A 20 854 854 HOH HOH . I 5 HOH A 21 855 855 HOH HOH . I 5 HOH A 22 856 856 HOH HOH . I 5 HOH A 23 857 857 HOH HOH . I 5 HOH A 24 858 858 HOH HOH . I 5 HOH A 25 859 859 HOH HOH . I 5 HOH A 26 860 860 HOH HOH . I 5 HOH A 27 861 861 HOH HOH . I 5 HOH A 28 862 862 HOH HOH . I 5 HOH A 29 863 863 HOH HOH . I 5 HOH A 30 864 864 HOH HOH . I 5 HOH A 31 865 865 HOH HOH . I 5 HOH A 32 866 866 HOH HOH . I 5 HOH A 33 867 867 HOH HOH . I 5 HOH A 34 868 868 HOH HOH . I 5 HOH A 35 869 869 HOH HOH . I 5 HOH A 36 870 870 HOH HOH . I 5 HOH A 37 871 871 HOH HOH . I 5 HOH A 38 872 872 HOH HOH . I 5 HOH A 39 873 873 HOH HOH . I 5 HOH A 40 874 874 HOH HOH . I 5 HOH A 41 875 875 HOH HOH . I 5 HOH A 42 876 876 HOH HOH . I 5 HOH A 43 878 878 HOH HOH . I 5 HOH A 44 879 879 HOH HOH . I 5 HOH A 45 880 880 HOH HOH . I 5 HOH A 46 881 881 HOH HOH . I 5 HOH A 47 882 882 HOH HOH . I 5 HOH A 48 883 883 HOH HOH . I 5 HOH A 49 884 884 HOH HOH . I 5 HOH A 50 885 885 HOH HOH . I 5 HOH A 51 886 886 HOH HOH . I 5 HOH A 52 887 887 HOH HOH . I 5 HOH A 53 888 888 HOH HOH . I 5 HOH A 54 889 889 HOH HOH . I 5 HOH A 55 890 890 HOH HOH . I 5 HOH A 56 891 891 HOH HOH . I 5 HOH A 57 892 892 HOH HOH . I 5 HOH A 58 893 893 HOH HOH . I 5 HOH A 59 894 894 HOH HOH . I 5 HOH A 60 895 895 HOH HOH . I 5 HOH A 61 896 896 HOH HOH . I 5 HOH A 62 897 897 HOH HOH . I 5 HOH A 63 898 898 HOH HOH . J 5 HOH B 1 845 845 HOH HOH . J 5 HOH B 2 846 846 HOH HOH . J 5 HOH B 3 847 847 HOH HOH . J 5 HOH B 4 848 848 HOH HOH . J 5 HOH B 5 849 849 HOH HOH . J 5 HOH B 6 850 850 HOH HOH . J 5 HOH B 7 851 851 HOH HOH . J 5 HOH B 8 852 852 HOH HOH . J 5 HOH B 9 853 853 HOH HOH . J 5 HOH B 10 854 854 HOH HOH . J 5 HOH B 11 855 855 HOH HOH . J 5 HOH B 12 856 856 HOH HOH . J 5 HOH B 13 857 857 HOH HOH . J 5 HOH B 14 858 858 HOH HOH . J 5 HOH B 15 859 859 HOH HOH . J 5 HOH B 16 860 860 HOH HOH . J 5 HOH B 17 861 861 HOH HOH . J 5 HOH B 18 862 862 HOH HOH . J 5 HOH B 19 863 863 HOH HOH . J 5 HOH B 20 864 864 HOH HOH . J 5 HOH B 21 865 865 HOH HOH . J 5 HOH B 22 866 866 HOH HOH . J 5 HOH B 23 867 867 HOH HOH . J 5 HOH B 24 868 868 HOH HOH . J 5 HOH B 25 869 869 HOH HOH . J 5 HOH B 26 870 870 HOH HOH . J 5 HOH B 27 871 871 HOH HOH . J 5 HOH B 28 872 872 HOH HOH . J 5 HOH B 29 873 873 HOH HOH . J 5 HOH B 30 874 874 HOH HOH . J 5 HOH B 31 875 875 HOH HOH . J 5 HOH B 32 876 876 HOH HOH . J 5 HOH B 33 877 877 HOH HOH . J 5 HOH B 34 878 878 HOH HOH . J 5 HOH B 35 879 879 HOH HOH . J 5 HOH B 36 880 880 HOH HOH . J 5 HOH B 37 881 881 HOH HOH . J 5 HOH B 38 882 882 HOH HOH . J 5 HOH B 39 883 883 HOH HOH . J 5 HOH B 40 884 884 HOH HOH . J 5 HOH B 41 885 885 HOH HOH . J 5 HOH B 42 886 886 HOH HOH . J 5 HOH B 43 887 887 HOH HOH . J 5 HOH B 44 888 888 HOH HOH . J 5 HOH B 45 889 889 HOH HOH . J 5 HOH B 46 890 890 HOH HOH . J 5 HOH B 47 891 891 HOH HOH . J 5 HOH B 48 892 892 HOH HOH . J 5 HOH B 49 893 893 HOH HOH . J 5 HOH B 50 894 894 HOH HOH . J 5 HOH B 51 895 895 HOH HOH . J 5 HOH B 52 896 896 HOH HOH . J 5 HOH B 53 897 897 HOH HOH . J 5 HOH B 54 898 898 HOH HOH . J 5 HOH B 55 899 899 HOH HOH . J 5 HOH B 56 900 900 HOH HOH . J 5 HOH B 57 901 901 HOH HOH . J 5 HOH B 58 902 902 HOH HOH . J 5 HOH B 59 903 903 HOH HOH . J 5 HOH B 60 904 904 HOH HOH . J 5 HOH B 61 905 905 HOH HOH . J 5 HOH B 62 906 906 HOH HOH . J 5 HOH B 63 907 907 HOH HOH . J 5 HOH B 64 908 908 HOH HOH . J 5 HOH B 65 909 909 HOH HOH . J 5 HOH B 66 910 910 HOH HOH . J 5 HOH B 67 911 911 HOH HOH . J 5 HOH B 68 912 912 HOH HOH . J 5 HOH B 69 913 913 HOH HOH . J 5 HOH B 70 914 914 HOH HOH . J 5 HOH B 71 915 915 HOH HOH . J 5 HOH B 72 916 916 HOH HOH . J 5 HOH B 73 917 917 HOH HOH . J 5 HOH B 74 918 918 HOH HOH . J 5 HOH B 75 919 919 HOH HOH . J 5 HOH B 76 920 920 HOH HOH . J 5 HOH B 77 921 921 HOH HOH . J 5 HOH B 78 922 922 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 PLP . . . D 3 83.457 36.837 24.419 1 47.6 ? N1 PLP 832 A 1 HETATM 2 C C2 PLP . . . D 3 82.96 35.558 24.272 1 46.17 ? C2 PLP 832 A 1 HETATM 3 C C2A PLP . . . D 3 82.489 34.794 25.474 1 46.68 ? C2A PLP 832 A 1 HETATM 4 C C3 PLP . . . D 3 82.896 34.976 23.011 1 45 ? C3 PLP 832 A 1 HETATM 5 O O3 PLP . . . D 3 82.404 33.705 22.867 1 44.39 ? O3 PLP 832 A 1 HETATM 6 C C4 PLP . . . D 3 83.333 35.683 21.898 1 44.99 ? C4 PLP 832 A 1 HETATM 7 C C4A PLP . . . D 3 83.418 35.002 20.564 1 44.19 ? C4A PLP 832 A 1 HETATM 8 O O4A PLP . . . D 3 84.443 35.095 19.89 1 43.21 ? O4A PLP 832 A 1 HETATM 9 C C5 PLP . . . D 3 83.832 36.971 22.052 1 46.74 ? C5 PLP 832 A 1 HETATM 10 C C6 PLP . . . D 3 83.892 37.545 23.317 1 47.56 ? C6 PLP 832 A 1 HETATM 11 C C5A PLP . . . D 3 84.309 37.747 20.846 1 48.3 ? C5A PLP 832 A 1 HETATM 12 O O4P PLP . . . D 3 83.245 37.898 19.934 1 49.11 ? O4P PLP 832 A 1 HETATM 13 P P PLP . . . D 3 83.438 38.761 18.589 1 49.26 ? P PLP 832 A 1 HETATM 14 O O1P PLP . . . D 3 84.552 38.168 17.76 1 48.06 ? O1P PLP 832 A 1 HETATM 15 O O2P PLP . . . D 3 83.773 40.189 18.944 1 47.71 ? O2P PLP 832 A 1 HETATM 16 O O3P PLP . . . D 3 82.146 38.721 17.808 1 48.51 ? O3P PLP 832 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 16 #