data_3CEJ # _model_server_result.job_id 4mPF2DFEtrVhD49HuIZKzw _model_server_result.datetime_utc '2024-12-27 01:31:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3cej # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":833}' # _entry.id 3CEJ # _exptl.entry_id 3CEJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 455.815 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '1-{2-[3-(2-Chloro-4,5-difluoro-benzoyl)-ureido]-4-fluoro-phenyl}-piperidine-4-carboxylic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3CEJ _cell.length_a 123.27 _cell.length_b 123.27 _cell.length_c 121.88 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3CEJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 658 A LYS 680 1_555 D C4A PLP . A PLP 832 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.854 ? covale ? covale2 B NZ LYS 658 B LYS 680 1_555 G C4A PLP . B PLP 832 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.489 ? # _chem_comp.formula 'C20 H17 Cl F3 N3 O4' _chem_comp.formula_weight 455.815 _chem_comp.id AVF _chem_comp.mon_nstd_flag . _chem_comp.name '1-{2-[3-(2-Chloro-4,5-difluoro-benzoyl)-ureido]-4-fluoro-phenyl}-piperidine-4-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '1-[2-({[(2-chloro-4,5-difluorophenyl)carbonyl]carbamoyl}amino)-4-fluorophenyl]piperidine-4-carboxylic acid' # _atom_sites.entry_id 3CEJ _atom_sites.fract_transf_matrix[1][1] 0.008112 _atom_sites.fract_transf_matrix[1][2] 0.004684 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009367 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008205 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NBG A 1 1 1 NBG NBG . D 3 PLP A 1 832 832 PLP PLP . E 4 AVF A 1 833 833 AVF AVF . F 2 NBG B 1 2 2 NBG NBG . G 3 PLP B 1 832 832 PLP PLP . H 4 AVF B 1 833 833 AVF AVF . I 5 HOH A 1 834 834 HOH HOH . I 5 HOH A 2 835 835 HOH HOH . I 5 HOH A 3 836 836 HOH HOH . I 5 HOH A 4 837 837 HOH HOH . I 5 HOH A 5 838 838 HOH HOH . I 5 HOH A 6 839 839 HOH HOH . I 5 HOH A 7 840 840 HOH HOH . I 5 HOH A 8 841 841 HOH HOH . I 5 HOH A 9 842 842 HOH HOH . I 5 HOH A 10 843 843 HOH HOH . I 5 HOH A 11 844 844 HOH HOH . I 5 HOH A 12 846 846 HOH HOH . I 5 HOH A 13 847 847 HOH HOH . I 5 HOH A 14 848 848 HOH HOH . I 5 HOH A 15 849 849 HOH HOH . I 5 HOH A 16 850 850 HOH HOH . I 5 HOH A 17 851 851 HOH HOH . I 5 HOH A 18 852 852 HOH HOH . I 5 HOH A 19 853 853 HOH HOH . I 5 HOH A 20 854 854 HOH HOH . I 5 HOH A 21 855 855 HOH HOH . I 5 HOH A 22 856 856 HOH HOH . I 5 HOH A 23 857 857 HOH HOH . I 5 HOH A 24 858 858 HOH HOH . I 5 HOH A 25 859 859 HOH HOH . I 5 HOH A 26 860 860 HOH HOH . I 5 HOH A 27 861 861 HOH HOH . I 5 HOH A 28 862 862 HOH HOH . I 5 HOH A 29 863 863 HOH HOH . I 5 HOH A 30 864 864 HOH HOH . I 5 HOH A 31 865 865 HOH HOH . I 5 HOH A 32 866 866 HOH HOH . I 5 HOH A 33 867 867 HOH HOH . I 5 HOH A 34 868 868 HOH HOH . I 5 HOH A 35 869 869 HOH HOH . I 5 HOH A 36 870 870 HOH HOH . I 5 HOH A 37 871 871 HOH HOH . I 5 HOH A 38 872 872 HOH HOH . I 5 HOH A 39 873 873 HOH HOH . I 5 HOH A 40 874 874 HOH HOH . I 5 HOH A 41 875 875 HOH HOH . I 5 HOH A 42 876 876 HOH HOH . I 5 HOH A 43 878 878 HOH HOH . I 5 HOH A 44 879 879 HOH HOH . I 5 HOH A 45 880 880 HOH HOH . I 5 HOH A 46 881 881 HOH HOH . I 5 HOH A 47 882 882 HOH HOH . I 5 HOH A 48 883 883 HOH HOH . I 5 HOH A 49 884 884 HOH HOH . I 5 HOH A 50 885 885 HOH HOH . I 5 HOH A 51 886 886 HOH HOH . I 5 HOH A 52 887 887 HOH HOH . I 5 HOH A 53 888 888 HOH HOH . I 5 HOH A 54 889 889 HOH HOH . I 5 HOH A 55 890 890 HOH HOH . I 5 HOH A 56 891 891 HOH HOH . I 5 HOH A 57 892 892 HOH HOH . I 5 HOH A 58 893 893 HOH HOH . I 5 HOH A 59 894 894 HOH HOH . I 5 HOH A 60 895 895 HOH HOH . I 5 HOH A 61 896 896 HOH HOH . I 5 HOH A 62 897 897 HOH HOH . I 5 HOH A 63 898 898 HOH HOH . J 5 HOH B 1 845 845 HOH HOH . J 5 HOH B 2 846 846 HOH HOH . J 5 HOH B 3 847 847 HOH HOH . J 5 HOH B 4 848 848 HOH HOH . J 5 HOH B 5 849 849 HOH HOH . J 5 HOH B 6 850 850 HOH HOH . J 5 HOH B 7 851 851 HOH HOH . J 5 HOH B 8 852 852 HOH HOH . J 5 HOH B 9 853 853 HOH HOH . J 5 HOH B 10 854 854 HOH HOH . J 5 HOH B 11 855 855 HOH HOH . J 5 HOH B 12 856 856 HOH HOH . J 5 HOH B 13 857 857 HOH HOH . J 5 HOH B 14 858 858 HOH HOH . J 5 HOH B 15 859 859 HOH HOH . J 5 HOH B 16 860 860 HOH HOH . J 5 HOH B 17 861 861 HOH HOH . J 5 HOH B 18 862 862 HOH HOH . J 5 HOH B 19 863 863 HOH HOH . J 5 HOH B 20 864 864 HOH HOH . J 5 HOH B 21 865 865 HOH HOH . J 5 HOH B 22 866 866 HOH HOH . J 5 HOH B 23 867 867 HOH HOH . J 5 HOH B 24 868 868 HOH HOH . J 5 HOH B 25 869 869 HOH HOH . J 5 HOH B 26 870 870 HOH HOH . J 5 HOH B 27 871 871 HOH HOH . J 5 HOH B 28 872 872 HOH HOH . J 5 HOH B 29 873 873 HOH HOH . J 5 HOH B 30 874 874 HOH HOH . J 5 HOH B 31 875 875 HOH HOH . J 5 HOH B 32 876 876 HOH HOH . J 5 HOH B 33 877 877 HOH HOH . J 5 HOH B 34 878 878 HOH HOH . J 5 HOH B 35 879 879 HOH HOH . J 5 HOH B 36 880 880 HOH HOH . J 5 HOH B 37 881 881 HOH HOH . J 5 HOH B 38 882 882 HOH HOH . J 5 HOH B 39 883 883 HOH HOH . J 5 HOH B 40 884 884 HOH HOH . J 5 HOH B 41 885 885 HOH HOH . J 5 HOH B 42 886 886 HOH HOH . J 5 HOH B 43 887 887 HOH HOH . J 5 HOH B 44 888 888 HOH HOH . J 5 HOH B 45 889 889 HOH HOH . J 5 HOH B 46 890 890 HOH HOH . J 5 HOH B 47 891 891 HOH HOH . J 5 HOH B 48 892 892 HOH HOH . J 5 HOH B 49 893 893 HOH HOH . J 5 HOH B 50 894 894 HOH HOH . J 5 HOH B 51 895 895 HOH HOH . J 5 HOH B 52 896 896 HOH HOH . J 5 HOH B 53 897 897 HOH HOH . J 5 HOH B 54 898 898 HOH HOH . J 5 HOH B 55 899 899 HOH HOH . J 5 HOH B 56 900 900 HOH HOH . J 5 HOH B 57 901 901 HOH HOH . J 5 HOH B 58 902 902 HOH HOH . J 5 HOH B 59 903 903 HOH HOH . J 5 HOH B 60 904 904 HOH HOH . J 5 HOH B 61 905 905 HOH HOH . J 5 HOH B 62 906 906 HOH HOH . J 5 HOH B 63 907 907 HOH HOH . J 5 HOH B 64 908 908 HOH HOH . J 5 HOH B 65 909 909 HOH HOH . J 5 HOH B 66 910 910 HOH HOH . J 5 HOH B 67 911 911 HOH HOH . J 5 HOH B 68 912 912 HOH HOH . J 5 HOH B 69 913 913 HOH HOH . J 5 HOH B 70 914 914 HOH HOH . J 5 HOH B 71 915 915 HOH HOH . J 5 HOH B 72 916 916 HOH HOH . J 5 HOH B 73 917 917 HOH HOH . J 5 HOH B 74 918 918 HOH HOH . J 5 HOH B 75 919 919 HOH HOH . J 5 HOH B 76 920 920 HOH HOH . J 5 HOH B 77 921 921 HOH HOH . J 5 HOH B 78 922 922 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 AVF . . . H 4 85.521 14.987 54.585 1 56.01 ? C1 AVF 833 B 1 HETATM 2 C C2 AVF . . . H 4 84.372 15.413 53.945 1 55.8 ? C2 AVF 833 B 1 HETATM 3 C C3 AVF . . . H 4 83.125 15.087 54.46 1 56.01 ? C3 AVF 833 B 1 HETATM 4 C C7 AVF . . . H 4 81.592 14.026 56.13 1 55.1 ? C7 AVF 833 B 1 HETATM 5 C C11 AVF . . . H 4 79.594 13.004 55.481 1 53.9 ? C11 AVF 833 B 1 HETATM 6 C C13 AVF . . . H 4 77.773 13.146 57.078 1 54.5 ? C13 AVF 833 B 1 HETATM 7 C C14 AVF . . . H 4 76.947 12.209 56.447 1 54.07 ? C14 AVF 833 B 1 HETATM 8 C C15 AVF . . . H 4 75.632 12.007 56.86 1 53.63 ? C15 AVF 833 B 1 HETATM 9 C C16 AVF . . . H 4 75.108 12.735 57.907 1 53.34 ? C16 AVF 833 B 1 HETATM 10 C C24 AVF . . . H 4 79.101 14.474 59.548 1 52.79 ? C24 AVF 833 B 1 HETATM 11 C C27 AVF . . . H 4 79.478 15.631 60.487 1 52.69 ? C27 AVF 833 B 1 HETATM 12 C C28 AVF . . . H 4 79.63 16.952 59.698 1 52.3 ? C28 AVF 833 B 1 HETATM 13 C C29 AVF . . . H 4 79.99 18.134 60.609 1 52.23 ? C29 AVF 833 B 1 HETATM 14 O O31 AVF . . . H 4 79.775 18.03 61.839 1 52.77 ? O31 AVF 833 B 1 HETATM 15 O O30 AVF . . . H 4 80.486 19.128 60.041 1 51.88 ? O30 AVF 833 B 1 HETATM 16 C C26 AVF . . . H 4 78.335 17.262 58.946 1 52.2 ? C26 AVF 833 B 1 HETATM 17 C C25 AVF . . . H 4 78.003 16.082 58.034 1 53.18 ? C25 AVF 833 B 1 HETATM 18 N N21 AVF . . . H 4 77.851 14.849 58.856 1 53.56 ? N21 AVF 833 B 1 HETATM 19 C C18 AVF . . . H 4 77.224 13.885 58.151 1 53.79 ? C18 AVF 833 B 1 HETATM 20 C C17 AVF . . . H 4 75.906 13.667 58.542 1 53.36 ? C17 AVF 833 B 1 HETATM 21 F F23 AVF . . . H 4 74.848 11.1 56.25 1 54.32 ? F23 AVF 833 B 1 HETATM 22 N N12 AVF . . . H 4 79.044 13.364 56.656 1 54.44 ? N12 AVF 833 B 1 HETATM 23 O O19 AVF . . . H 4 79.002 12.364 54.619 1 53.85 ? O19 AVF 833 B 1 HETATM 24 N N10 AVF . . . H 4 80.851 13.35 55.261 1 53.74 ? N10 AVF 833 B 1 HETATM 25 O O20 AVF . . . H 4 81.205 14.438 57.227 1 53.61 ? O20 AVF 833 B 1 HETATM 26 C C4 AVF . . . H 4 83.006 14.324 55.621 1 55.4 ? C4 AVF 833 B 1 HETATM 27 F F22 AVF . . . H 4 84.469 16.15 52.828 1 56.31 ? F22 AVF 833 B 1 HETATM 28 F F9 AVF . . . H 4 86.726 15.306 54.069 1 56.09 ? F9 AVF 833 B 1 HETATM 29 C C6 AVF . . . H 4 85.416 14.224 55.747 1 56.63 ? C6 AVF 833 B 1 HETATM 30 C C5 AVF . . . H 4 84.162 13.897 56.268 1 56.42 ? C5 AVF 833 B 1 HETATM 31 CL CL8 AVF . . . H 4 84.057 12.955 57.707 1 56.44 ? CL8 AVF 833 B 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 41 _model_server_stats.query_time_ms 343 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #