data_3CF0 # _model_server_result.job_id X7dB98pzXWgM1cRVdFkxaQ _model_server_result.datetime_utc '2024-11-08 06:13:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3cf0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":900}' # _entry.id 3CF0 # _exptl.entry_id 3CF0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 14 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 112.29 _cell.angle_gamma 90 _cell.entry_id 3CF0 _cell.length_a 173.317 _cell.length_b 167.223 _cell.length_c 209.465 _cell.Z_PDB 56 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3CF0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA heptameric 7 author_and_software_defined_assembly 1 PISA heptameric 7 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,G,H,M,N,O,P,Q,U,V,AA,BA 1 1 D,E,F,I,J,K,L,R,S,T,W,X,Y,Z 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 O N N ? 2 P N N ? 2 Q N N ? 2 R N N ? 2 S N N ? 2 T N N ? 2 U N N ? 2 V N N ? 2 W N N ? 2 X N N ? 2 Y N N ? 2 Z N N ? 2 AA N N ? 2 BA N N # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 3CF0 _atom_sites.fract_transf_matrix[1][1] 0.00577 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002365 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00598 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00516 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code O 2 ADP A 1 900 900 ADP ADP . P 2 ADP B 1 900 900 ADP ADP . Q 2 ADP C 1 900 900 ADP ADP . R 2 ADP D 1 900 900 ADP ADP . S 2 ADP E 1 900 900 ADP ADP . T 2 ADP F 1 900 900 ADP ADP . U 2 ADP G 1 900 900 ADP ADP . V 2 ADP H 1 900 900 ADP ADP . W 2 ADP I 1 900 900 ADP ADP . X 2 ADP J 1 900 900 ADP ADP . Y 2 ADP K 1 900 900 ADP ADP . Z 2 ADP L 1 900 900 ADP ADP . AA 2 ADP M 1 900 900 ADP ADP . BA 2 ADP N 1 900 900 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . V 2 -4.669 -30.089 -31.572 1 66.74 ? PB ADP 900 H 1 HETATM 2 O O1B ADP . . . V 2 -6.148 -30.261 -31.526 1 66.66 ? O1B ADP 900 H 1 HETATM 3 O O2B ADP . . . V 2 -4.013 -31.372 -31.065 1 66.52 ? O2B ADP 900 H 1 HETATM 4 O O3B ADP . . . V 2 -4.255 -28.713 -31.098 1 67.37 ? O3B ADP 900 H 1 HETATM 5 P PA ADP . . . V 2 -4.854 -30.884 -34.247 1 68.85 ? PA ADP 900 H 1 HETATM 6 O O1A ADP . . . V 2 -5.315 -32.216 -33.696 1 65.51 ? O1A ADP 900 H 1 HETATM 7 O O2A ADP . . . V 2 -5.896 -29.937 -34.827 1 69.13 ? O2A ADP 900 H 1 HETATM 8 O O3A ADP . . . V 2 -4.121 -30.039 -33.09 1 66.8 ? O3A ADP 900 H 1 HETATM 9 O O5' ADP . . . V 2 -3.66 -31.009 -35.298 1 66.13 ? O5' ADP 900 H 1 HETATM 10 C C5' ADP . . . V 2 -3.198 -29.791 -35.888 1 66.81 ? C5' ADP 900 H 1 HETATM 11 C C4' ADP . . . V 2 -2.596 -30.114 -37.259 1 68.33 ? C4' ADP 900 H 1 HETATM 12 O O4' ADP . . . V 2 -1.24 -30.553 -37.143 1 69.24 ? O4' ADP 900 H 1 HETATM 13 C C3' ADP . . . V 2 -3.299 -31.284 -37.936 1 69.35 ? C3' ADP 900 H 1 HETATM 14 O O3' ADP . . . V 2 -4.32 -30.788 -38.764 1 72.55 ? O3' ADP 900 H 1 HETATM 15 C C2' ADP . . . V 2 -2.229 -31.888 -38.796 1 69.27 ? C2' ADP 900 H 1 HETATM 16 O O2' ADP . . . V 2 -2.013 -31.12 -39.971 1 70.71 ? O2' ADP 900 H 1 HETATM 17 C C1' ADP . . . V 2 -1.016 -31.694 -37.936 1 67.68 ? C1' ADP 900 H 1 HETATM 18 N N9 ADP . . . V 2 -0.972 -32.904 -37.119 1 67.07 ? N9 ADP 900 H 1 HETATM 19 C C8 ADP . . . V 2 -1.009 -33.001 -35.89 1 66.65 ? C8 ADP 900 H 1 HETATM 20 N N7 ADP . . . V 2 -0.988 -33.896 -34.997 1 67.36 ? N7 ADP 900 H 1 HETATM 21 C C5 ADP . . . V 2 -0.902 -34.858 -36.014 1 67.04 ? C5 ADP 900 H 1 HETATM 22 C C6 ADP . . . V 2 -0.812 -36.241 -36.007 1 66.64 ? C6 ADP 900 H 1 HETATM 23 N N6 ADP . . . V 2 -0.808 -36.945 -34.851 1 66.27 ? N6 ADP 900 H 1 HETATM 24 N N1 ADP . . . V 2 -0.76 -36.905 -37.166 1 66.44 ? N1 ADP 900 H 1 HETATM 25 C C2 ADP . . . V 2 -0.762 -36.28 -38.34 1 66.22 ? C2 ADP 900 H 1 HETATM 26 N N3 ADP . . . V 2 -0.84 -34.96 -38.432 1 64.83 ? N3 ADP 900 H 1 HETATM 27 C C4 ADP . . . V 2 -0.911 -34.23 -37.309 1 66.31 ? C4 ADP 900 H 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #