data_3CF2
#
_model_server_result.job_id            rSg_xlI05RPPcgRjgyuObA 
_model_server_result.datetime_utc      '2024-11-08 08:49:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3cf2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":807}' 
#
_entry.id    3CF2 
#
_exptl.entry_id    3CF2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3CF2 
_cell.length_a            144.9 
_cell.length_b            144.9 
_cell.length_c            164.4 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3CF2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        143 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 3' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA hexameric 6 author_and_software_defined_assembly 1 
PISA hexameric 6 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H 1 1,2,3 
C,D,I,J,K,L 2 1,4,5 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_645 -y+1,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 217.35 -125.487081 0 
3 'crystal symmetry operation' 3_765 -x+y+2,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 217.35 125.487081 0 
4 'crystal symmetry operation' 2_765 -y+2,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 217.35 125.487081 0 
5 'crystal symmetry operation' 3_675 -x+y+1,-x+2,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 250.974162 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 G N N 
? 2 I N N 
? 2 K N N 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     3CF2 
_atom_sites.fract_transf_matrix[1][1]    0.006901 
_atom_sites.fract_transf_matrix[1][2]    0.003984 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007969 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006083 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 ADP A 1 807 807 ADP ADP . 
F 3 ANP A 1 901 901 ANP ANP . 
G 2 ADP B 1 807 807 ADP ADP . 
H 3 ANP B 1 901 901 ANP ANP . 
I 2 ADP C 1 807 807 ADP ADP . 
J 3 ANP C 1 901 901 ANP ANP . 
K 2 ADP D 1 807 807 ADP ADP . 
L 3 ANP D 1 901 901 ANP ANP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . G 2 149.69 -32.32 -56.255 1 163.01 ? PB ADP 807 B 1 
HETATM 2 O O1B ADP . . . G 2 148.808 -32.175 -57.43 1 163.01 ? O1B ADP 807 B 1 
HETATM 3 O O2B ADP . . . G 2 148.822 -32.763 -54.993 1 163.01 ? O2B ADP 807 B 1 
HETATM 4 O O3B ADP . . . G 2 150.389 -31.049 -55.988 1 163.01 ? O3B ADP 807 B 1 
HETATM 5 P PA ADP . . . G 2 150.7 -34.544 -57.579 1 163.01 ? PA ADP 807 B 1 
HETATM 6 O O1A ADP . . . G 2 149.441 -35.255 -57.438 1 163.01 ? O1A ADP 807 B 1 
HETATM 7 O O2A ADP . . . G 2 150.802 -34.024 -58.932 1 163.01 ? O2A ADP 807 B 1 
HETATM 8 O O3A ADP . . . G 2 150.745 -33.397 -56.563 1 163.01 ? O3A ADP 807 B 1 
HETATM 9 O O5' ADP . . . G 2 151.936 -35.49 -57.329 1 163.01 ? O5' ADP 807 B 1 
HETATM 10 C C5' ADP . . . G 2 152.98 -35.385 -56.354 1 163.01 ? C5' ADP 807 B 1 
HETATM 11 C C4' ADP . . . G 2 153.926 -36.615 -56.588 1 163.01 ? C4' ADP 807 B 1 
HETATM 12 O O4' ADP . . . G 2 153.894 -37.333 -55.375 1 163.01 ? O4' ADP 807 B 1 
HETATM 13 C C3' ADP . . . G 2 153.475 -37.612 -57.674 1 163.01 ? C3' ADP 807 B 1 
HETATM 14 O O3' ADP . . . G 2 154.506 -37.902 -58.621 1 163.01 ? O3' ADP 807 B 1 
HETATM 15 C C2' ADP . . . G 2 152.997 -38.87 -56.974 1 163.01 ? C2' ADP 807 B 1 
HETATM 16 O O2' ADP . . . G 2 153.421 -40.082 -57.605 1 163.01 ? O2' ADP 807 B 1 
HETATM 17 C C1' ADP . . . G 2 153.46 -38.698 -55.546 1 163.01 ? C1' ADP 807 B 1 
HETATM 18 N N9 ADP . . . G 2 152.364 -38.93 -54.561 1 163.01 ? N9 ADP 807 B 1 
HETATM 19 C C8 ADP . . . G 2 151.605 -37.953 -54.034 1 163.01 ? C8 ADP 807 B 1 
HETATM 20 N N7 ADP . . . G 2 150.745 -38.462 -53.192 1 163.01 ? N7 ADP 807 B 1 
HETATM 21 C C5 ADP . . . G 2 150.876 -39.748 -53.194 1 163.01 ? C5 ADP 807 B 1 
HETATM 22 C C6 ADP . . . G 2 150.314 -40.78 -52.475 1 163.01 ? C6 ADP 807 B 1 
HETATM 23 N N6 ADP . . . G 2 149.3 -40.519 -51.659 1 163.01 ? N6 ADP 807 B 1 
HETATM 24 N N1 ADP . . . G 2 150.716 -42.084 -52.691 1 163.01 ? N1 ADP 807 B 1 
HETATM 25 C C2 ADP . . . G 2 151.74 -42.386 -53.526 1 163.01 ? C2 ADP 807 B 1 
HETATM 26 N N3 ADP . . . G 2 152.333 -41.368 -54.208 1 163.01 ? N3 ADP 807 B 1 
HETATM 27 C C4 ADP . . . G 2 151.973 -40.062 -54.034 1 163.01 ? C4 ADP 807 B 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    25 
_model_server_stats.query_time_ms           295 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           27 
#