data_3CF2
#
_model_server_result.job_id            Unmf23BXh2i7Ji3aHibnVg 
_model_server_result.datetime_utc      '2024-11-22 21:48:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3cf2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":901}' 
#
_entry.id    3CF2 
#
_exptl.entry_id    3CF2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              506.196 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3CF2 
_cell.length_a            144.9 
_cell.length_b            144.9 
_cell.length_c            164.4 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3CF2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        143 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 3' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA hexameric 6 author_and_software_defined_assembly 1 
PISA hexameric 6 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H 1 1,2,3 
C,D,I,J,K,L 2 1,4,5 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_645 -y+1,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 217.35 -125.487081 0 
3 'crystal symmetry operation' 3_765 -x+y+2,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 217.35 125.487081 0 
4 'crystal symmetry operation' 2_765 -y+2,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 217.35 125.487081 0 
5 'crystal symmetry operation' 3_675 -x+y+1,-x+2,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 250.974162 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 H N N 
? 3 J N N 
? 3 L N N 
#
_chem_comp.formula           'C10 H17 N6 O12 P3' 
_chem_comp.formula_weight    506.196 
_chem_comp.id                ANP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ANP doub 57 n n 
PG O2G ANP sing 58 n n 
PG O3G ANP sing 59 n n 
PG N3B ANP sing 60 n n 
O2G HOG2 ANP sing 61 n n 
O3G HOG3 ANP sing 62 n n 
PB O1B ANP doub 63 n n 
PB O2B ANP sing 64 n n 
PB N3B ANP sing 65 n n 
PB O3A ANP sing 66 n n 
O2B HOB2 ANP sing 67 n n 
N3B HNB1 ANP sing 68 n n 
PA O1A ANP doub 69 n n 
PA O2A ANP sing 70 n n 
PA O3A ANP sing 71 n n 
PA O5' ANP sing 72 n n 
O2A HOA2 ANP sing 73 n n 
O5' C5' ANP sing 74 n n 
C5' C4' ANP sing 75 n n 
C5' "H5'1" ANP sing 76 n n 
C5' "H5'2" ANP sing 77 n n 
C4' O4' ANP sing 78 n n 
C4' C3' ANP sing 79 n n 
C4' H4' ANP sing 80 n n 
O4' C1' ANP sing 81 n n 
C3' O3' ANP sing 82 n n 
C3' C2' ANP sing 83 n n 
C3' H3' ANP sing 84 n n 
O3' HO3' ANP sing 85 n n 
C2' O2' ANP sing 86 n n 
C2' C1' ANP sing 87 n n 
C2' H2' ANP sing 88 n n 
O2' HO2' ANP sing 89 n n 
C1' N9 ANP sing 90 n n 
C1' H1' ANP sing 91 n n 
N9 C8 ANP sing 92 n y 
N9 C4 ANP sing 93 n y 
C8 N7 ANP doub 94 n y 
C8 H8 ANP sing 95 n n 
N7 C5 ANP sing 96 n y 
C5 C6 ANP sing 97 n y 
C5 C4 ANP doub 98 n y 
C6 N6 ANP sing 99 n n 
C6 N1 ANP doub 100 n y 
N6 HN61 ANP sing 101 n n 
N6 HN62 ANP sing 102 n n 
N1 C2 ANP sing 103 n y 
C2 N3 ANP doub 104 n y 
C2 H2 ANP sing 105 n n 
N3 C4 ANP sing 106 n y 
#
_atom_sites.entry_id                     3CF2 
_atom_sites.fract_transf_matrix[1][1]    0.006901 
_atom_sites.fract_transf_matrix[1][2]    0.003984 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007969 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006083 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 ADP A 1 807 807 ADP ADP . 
F 3 ANP A 1 901 901 ANP ANP . 
G 2 ADP B 1 807 807 ADP ADP . 
H 3 ANP B 1 901 901 ANP ANP . 
I 2 ADP C 1 807 807 ADP ADP . 
J 3 ANP C 1 901 901 ANP ANP . 
K 2 ADP D 1 807 807 ADP ADP . 
L 3 ANP D 1 901 901 ANP ANP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ANP . . . F 3 120.653 -16.855 -19.478 1 150.81 ? PG ANP 901 A 1 
HETATM 2 O O1G ANP . . . F 3 122.126 -17.038 -19.681 1 150.81 ? O1G ANP 901 A 1 
HETATM 3 O O2G ANP . . . F 3 120.345 -16.681 -17.899 1 150.81 ? O2G ANP 901 A 1 
HETATM 4 O O3G ANP . . . F 3 120.182 -15.641 -20.221 1 150.81 ? O3G ANP 901 A 1 
HETATM 5 P PB ANP . . . F 3 118.551 -18.66 -19.819 1 150.81 ? PB ANP 901 A 1 
HETATM 6 O O1B ANP . . . F 3 117.524 -17.775 -20.444 1 150.81 ? O1B ANP 901 A 1 
HETATM 7 O O2B ANP . . . F 3 118.239 -18.787 -18.243 1 150.81 ? O2B ANP 901 A 1 
HETATM 8 N N3B ANP . . . F 3 119.932 -18.076 -20.019 1 150.81 ? N3B ANP 901 A 1 
HETATM 9 P PA ANP . . . F 3 117.333 -21.213 -20.69 1 150.81 ? PA ANP 901 A 1 
HETATM 10 O O1A ANP . . . F 3 116.083 -20.757 -20.051 1 150.81 ? O1A ANP 901 A 1 
HETATM 11 O O2A ANP . . . F 3 117.063 -21.476 -22.109 1 150.81 ? O2A ANP 901 A 1 
HETATM 12 O O3A ANP . . . F 3 118.486 -20.106 -20.518 1 150.81 ? O3A ANP 901 A 1 
HETATM 13 O O5' ANP . . . F 3 117.834 -22.598 -20.056 1 150.81 ? O5' ANP 901 A 1 
HETATM 14 C C5' ANP . . . F 3 119.085 -22.966 -19.417 1 150.81 ? C5' ANP 901 A 1 
HETATM 15 C C4' ANP . . . F 3 118.908 -24.486 -19 1 150.81 ? C4' ANP 901 A 1 
HETATM 16 O O4' ANP . . . F 3 118.123 -24.465 -17.796 1 150.81 ? O4' ANP 901 A 1 
HETATM 17 C C3' ANP . . . F 3 118.116 -25.349 -20.026 1 150.81 ? C3' ANP 901 A 1 
HETATM 18 O O3' ANP . . . F 3 118.819 -26.549 -20.423 1 150.81 ? O3' ANP 901 A 1 
HETATM 19 C C2' ANP . . . F 3 116.742 -25.664 -19.401 1 150.81 ? C2' ANP 901 A 1 
HETATM 20 O O2' ANP . . . F 3 116.304 -27.027 -19.605 1 150.81 ? O2' ANP 901 A 1 
HETATM 21 C C1' ANP . . . F 3 116.871 -25.211 -17.921 1 150.81 ? C1' ANP 901 A 1 
HETATM 22 N N9 ANP . . . F 3 115.733 -24.28 -17.459 1 150.81 ? N9 ANP 901 A 1 
HETATM 23 C C8 ANP . . . F 3 115.911 -23.013 -16.979 1 150.81 ? C8 ANP 901 A 1 
HETATM 24 N N7 ANP . . . F 3 114.744 -22.468 -16.678 1 150.81 ? N7 ANP 901 A 1 
HETATM 25 C C5 ANP . . . F 3 113.794 -23.336 -16.934 1 150.81 ? C5 ANP 901 A 1 
HETATM 26 C C6 ANP . . . F 3 112.386 -23.341 -16.844 1 150.81 ? C6 ANP 901 A 1 
HETATM 27 N N6 ANP . . . F 3 111.745 -22.264 -16.368 1 150.81 ? N6 ANP 901 A 1 
HETATM 28 N N1 ANP . . . F 3 111.662 -24.469 -17.225 1 150.81 ? N1 ANP 901 A 1 
HETATM 29 C C2 ANP . . . F 3 112.266 -25.594 -17.717 1 150.81 ? C2 ANP 901 A 1 
HETATM 30 N N3 ANP . . . F 3 113.629 -25.603 -17.817 1 150.81 ? N3 ANP 901 A 1 
HETATM 31 C C4 ANP . . . F 3 114.416 -24.515 -17.466 1 150.81 ? C4 ANP 901 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    44 
_model_server_stats.query_time_ms           267 
_model_server_stats.encode_time_ms          13 
_model_server_stats.element_count           31 
#