data_3CF2 # _model_server_result.job_id jS8ySX4tlqJJ0-oEmx-rFg _model_server_result.datetime_utc '2024-11-08 08:50:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3cf2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":901}' # _entry.id 3CF2 # _exptl.entry_id 3CF2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3CF2 _cell.length_a 144.9 _cell.length_b 144.9 _cell.length_c 164.4 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3CF2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 143 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA hexameric 6 author_and_software_defined_assembly 1 PISA hexameric 6 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H 1 1,2,3 C,D,I,J,K,L 2 1,4,5 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_645 -y+1,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 217.35 -125.487081 0 3 'crystal symmetry operation' 3_765 -x+y+2,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 217.35 125.487081 0 4 'crystal symmetry operation' 2_765 -y+2,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 217.35 125.487081 0 5 'crystal symmetry operation' 3_675 -x+y+1,-x+2,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 250.974162 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 H N N ? 3 J N N ? 3 L N N # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 57 n n PG O2G ANP sing 58 n n PG O3G ANP sing 59 n n PG N3B ANP sing 60 n n O2G HOG2 ANP sing 61 n n O3G HOG3 ANP sing 62 n n PB O1B ANP doub 63 n n PB O2B ANP sing 64 n n PB N3B ANP sing 65 n n PB O3A ANP sing 66 n n O2B HOB2 ANP sing 67 n n N3B HNB1 ANP sing 68 n n PA O1A ANP doub 69 n n PA O2A ANP sing 70 n n PA O3A ANP sing 71 n n PA O5' ANP sing 72 n n O2A HOA2 ANP sing 73 n n O5' C5' ANP sing 74 n n C5' C4' ANP sing 75 n n C5' "H5'1" ANP sing 76 n n C5' "H5'2" ANP sing 77 n n C4' O4' ANP sing 78 n n C4' C3' ANP sing 79 n n C4' H4' ANP sing 80 n n O4' C1' ANP sing 81 n n C3' O3' ANP sing 82 n n C3' C2' ANP sing 83 n n C3' H3' ANP sing 84 n n O3' HO3' ANP sing 85 n n C2' O2' ANP sing 86 n n C2' C1' ANP sing 87 n n C2' H2' ANP sing 88 n n O2' HO2' ANP sing 89 n n C1' N9 ANP sing 90 n n C1' H1' ANP sing 91 n n N9 C8 ANP sing 92 n y N9 C4 ANP sing 93 n y C8 N7 ANP doub 94 n y C8 H8 ANP sing 95 n n N7 C5 ANP sing 96 n y C5 C6 ANP sing 97 n y C5 C4 ANP doub 98 n y C6 N6 ANP sing 99 n n C6 N1 ANP doub 100 n y N6 HN61 ANP sing 101 n n N6 HN62 ANP sing 102 n n N1 C2 ANP sing 103 n y C2 N3 ANP doub 104 n y C2 H2 ANP sing 105 n n N3 C4 ANP sing 106 n y # _atom_sites.entry_id 3CF2 _atom_sites.fract_transf_matrix[1][1] 0.006901 _atom_sites.fract_transf_matrix[1][2] 0.003984 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007969 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006083 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 ADP A 1 807 807 ADP ADP . F 3 ANP A 1 901 901 ANP ANP . G 2 ADP B 1 807 807 ADP ADP . H 3 ANP B 1 901 901 ANP ANP . I 2 ADP C 1 807 807 ADP ADP . J 3 ANP C 1 901 901 ANP ANP . K 2 ADP D 1 807 807 ADP ADP . L 3 ANP D 1 901 901 ANP ANP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . H 3 147.4 -29.238 -19.634 1 150.81 ? PG ANP 901 B 1 HETATM 2 O O1G ANP . . . H 3 148.291 -28.052 -19.845 1 150.81 ? O1G ANP 901 B 1 HETATM 3 O O2G ANP . . . H 3 147.1 -29.411 -18.053 1 150.81 ? O2G ANP 901 B 1 HETATM 4 O O3G ANP . . . H 3 146.11 -29.046 -20.374 1 150.81 ? O3G ANP 901 B 1 HETATM 5 P PB ANP . . . H 3 147.918 -31.961 -19.962 1 150.81 ? PB ANP 901 B 1 HETATM 6 O O1B ANP . . . H 3 146.638 -32.414 -20.582 1 150.81 ? O1B ANP 901 B 1 HETATM 7 O O2B ANP . . . H 3 147.877 -32.287 -18.385 1 150.81 ? O2B ANP 901 B 1 HETATM 8 N N3B ANP . . . H 3 148.098 -30.474 -20.17 1 150.81 ? N3B ANP 901 B 1 HETATM 9 P PA ANP . . . H 3 149.524 -34.293 -20.826 1 150.81 ? PA ANP 901 B 1 HETATM 10 O O1A ANP . . . H 3 148.508 -35.146 -20.18 1 150.81 ? O1A ANP 901 B 1 HETATM 11 O O2A ANP . . . H 3 149.614 -34.665 -22.243 1 150.81 ? O2A ANP 901 B 1 HETATM 12 O O3A ANP . . . H 3 149.138 -32.741 -20.661 1 150.81 ? O3A ANP 901 B 1 HETATM 13 O O5' ANP . . . H 3 150.976 -34.544 -20.195 1 150.81 ? O5' ANP 901 B 1 HETATM 14 C C5' ANP . . . H 3 151.92 -33.639 -19.563 1 150.81 ? C5' ANP 901 B 1 HETATM 15 C C4' ANP . . . H 3 153.151 -34.547 -19.144 1 150.81 ? C4' ANP 901 B 1 HETATM 16 O O4' ANP . . . H 3 152.745 -35.212 -17.936 1 150.81 ? O4' ANP 901 B 1 HETATM 17 C C3' ANP . . . H 3 153.502 -35.669 -20.166 1 150.81 ? C3' ANP 901 B 1 HETATM 18 O O3' ANP . . . H 3 154.892 -35.658 -20.566 1 150.81 ? O3' ANP 901 B 1 HETATM 19 C C2' ANP . . . H 3 153.093 -37.014 -19.533 1 150.81 ? C2' ANP 901 B 1 HETATM 20 O O2' ANP . . . H 3 154.057 -38.073 -19.734 1 150.81 ? O2' ANP 901 B 1 HETATM 21 C C1' ANP . . . H 3 152.769 -36.669 -18.054 1 150.81 ? C1' ANP 901 B 1 HETATM 22 N N9 ANP . . . H 3 151.396 -37.191 -17.586 1 150.81 ? N9 ANP 901 B 1 HETATM 23 C C8 ANP . . . H 3 150.387 -36.403 -17.107 1 150.81 ? C8 ANP 901 B 1 HETATM 24 N N7 ANP . . . H 3 149.334 -37.143 -16.799 1 150.81 ? N7 ANP 901 B 1 HETATM 25 C C5 ANP . . . H 3 149.613 -38.4 -17.05 1 150.81 ? C5 ANP 901 B 1 HETATM 26 C C6 ANP . . . H 3 148.917 -39.623 -16.952 1 150.81 ? C6 ANP 901 B 1 HETATM 27 N N6 ANP . . . H 3 147.665 -39.641 -16.473 1 150.81 ? N6 ANP 901 B 1 HETATM 28 N N1 ANP . . . H 3 149.534 -40.814 -17.329 1 150.81 ? N1 ANP 901 B 1 HETATM 29 C C2 ANP . . . H 3 150.809 -40.853 -17.824 1 150.81 ? C2 ANP 901 B 1 HETATM 30 N N3 ANP . . . H 3 151.495 -39.676 -17.931 1 150.81 ? N3 ANP 901 B 1 HETATM 31 C C4 ANP . . . H 3 150.944 -38.45 -17.585 1 150.81 ? C4 ANP 901 B 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 32 _model_server_stats.query_time_ms 337 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #