data_3CF2
#
_model_server_result.job_id            YetQdrw2YNbRsp7UfGV7XQ 
_model_server_result.datetime_utc      '2024-11-22 21:41:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3cf2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":901}' 
#
_entry.id    3CF2 
#
_exptl.entry_id    3CF2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              506.196 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3CF2 
_cell.length_a            144.9 
_cell.length_b            144.9 
_cell.length_c            164.4 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3CF2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        143 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 3' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA hexameric 6 author_and_software_defined_assembly 1 
PISA hexameric 6 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H 1 1,2,3 
C,D,I,J,K,L 2 1,4,5 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_645 -y+1,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 217.35 -125.487081 0 
3 'crystal symmetry operation' 3_765 -x+y+2,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 217.35 125.487081 0 
4 'crystal symmetry operation' 2_765 -y+2,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 217.35 125.487081 0 
5 'crystal symmetry operation' 3_675 -x+y+1,-x+2,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 250.974162 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 H N N 
? 3 J N N 
? 3 L N N 
#
_chem_comp.formula           'C10 H17 N6 O12 P3' 
_chem_comp.formula_weight    506.196 
_chem_comp.id                ANP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ANP doub 57 n n 
PG O2G ANP sing 58 n n 
PG O3G ANP sing 59 n n 
PG N3B ANP sing 60 n n 
O2G HOG2 ANP sing 61 n n 
O3G HOG3 ANP sing 62 n n 
PB O1B ANP doub 63 n n 
PB O2B ANP sing 64 n n 
PB N3B ANP sing 65 n n 
PB O3A ANP sing 66 n n 
O2B HOB2 ANP sing 67 n n 
N3B HNB1 ANP sing 68 n n 
PA O1A ANP doub 69 n n 
PA O2A ANP sing 70 n n 
PA O3A ANP sing 71 n n 
PA O5' ANP sing 72 n n 
O2A HOA2 ANP sing 73 n n 
O5' C5' ANP sing 74 n n 
C5' C4' ANP sing 75 n n 
C5' "H5'1" ANP sing 76 n n 
C5' "H5'2" ANP sing 77 n n 
C4' O4' ANP sing 78 n n 
C4' C3' ANP sing 79 n n 
C4' H4' ANP sing 80 n n 
O4' C1' ANP sing 81 n n 
C3' O3' ANP sing 82 n n 
C3' C2' ANP sing 83 n n 
C3' H3' ANP sing 84 n n 
O3' HO3' ANP sing 85 n n 
C2' O2' ANP sing 86 n n 
C2' C1' ANP sing 87 n n 
C2' H2' ANP sing 88 n n 
O2' HO2' ANP sing 89 n n 
C1' N9 ANP sing 90 n n 
C1' H1' ANP sing 91 n n 
N9 C8 ANP sing 92 n y 
N9 C4 ANP sing 93 n y 
C8 N7 ANP doub 94 n y 
C8 H8 ANP sing 95 n n 
N7 C5 ANP sing 96 n y 
C5 C6 ANP sing 97 n y 
C5 C4 ANP doub 98 n y 
C6 N6 ANP sing 99 n n 
C6 N1 ANP doub 100 n y 
N6 HN61 ANP sing 101 n n 
N6 HN62 ANP sing 102 n n 
N1 C2 ANP sing 103 n y 
C2 N3 ANP doub 104 n y 
C2 H2 ANP sing 105 n n 
N3 C4 ANP sing 106 n y 
#
_atom_sites.entry_id                     3CF2 
_atom_sites.fract_transf_matrix[1][1]    0.006901 
_atom_sites.fract_transf_matrix[1][2]    0.003984 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007969 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006083 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 ADP A 1 807 807 ADP ADP . 
F 3 ANP A 1 901 901 ANP ANP . 
G 2 ADP B 1 807 807 ADP ADP . 
H 3 ANP B 1 901 901 ANP ANP . 
I 2 ADP C 1 807 807 ADP ADP . 
J 3 ANP C 1 901 901 ANP ANP . 
K 2 ADP D 1 807 807 ADP ADP . 
L 3 ANP D 1 901 901 ANP ANP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ANP . . . L 3 48.355 142.223 19.549 1 150.81 ? PG ANP 901 D 1 
HETATM 2 O O1G ANP . . . L 3 49.828 142.403 19.759 1 150.81 ? O1G ANP 901 D 1 
HETATM 3 O O2G ANP . . . L 3 48.055 142.048 17.969 1 150.81 ? O2G ANP 901 D 1 
HETATM 4 O O3G ANP . . . L 3 47.878 141.012 20.292 1 150.81 ? O3G ANP 901 D 1 
HETATM 5 P PB ANP . . . L 3 46.256 144.034 19.878 1 150.81 ? PB ANP 901 D 1 
HETATM 6 O O1B ANP . . . L 3 45.224 143.152 20.499 1 150.81 ? O1B ANP 901 D 1 
HETATM 7 O O2B ANP . . . L 3 45.952 144.159 18.3 1 150.81 ? O2B ANP 901 D 1 
HETATM 8 N N3B ANP . . . L 3 47.635 143.447 20.085 1 150.81 ? N3B ANP 901 D 1 
HETATM 9 P PA ANP . . . L 3 45.04 146.591 20.739 1 150.81 ? PA ANP 901 D 1 
HETATM 10 O O1A ANP . . . L 3 43.792 146.137 20.095 1 150.81 ? O1A ANP 901 D 1 
HETATM 11 O O2A ANP . . . L 3 44.764 146.857 22.156 1 150.81 ? O2A ANP 901 D 1 
HETATM 12 O O3A ANP . . . L 3 46.191 145.481 20.574 1 150.81 ? O3A ANP 901 D 1 
HETATM 13 O O5' ANP . . . L 3 45.547 147.974 20.106 1 150.81 ? O5' ANP 901 D 1 
HETATM 14 C C5' ANP . . . L 3 46.802 148.338 19.472 1 150.81 ? C5' ANP 901 D 1 
HETATM 15 C C4' ANP . . . L 3 46.631 149.858 19.052 1 150.81 ? C4' ANP 901 D 1 
HETATM 16 O O4' ANP . . . L 3 45.852 149.837 17.845 1 150.81 ? O4' ANP 901 D 1 
HETATM 17 C C3' ANP . . . L 3 45.836 150.724 20.073 1 150.81 ? C3' ANP 901 D 1 
HETATM 18 O O3' ANP . . . L 3 46.54 151.923 20.472 1 150.81 ? O3' ANP 901 D 1 
HETATM 19 C C2' ANP . . . L 3 44.466 151.042 19.441 1 150.81 ? C2' ANP 901 D 1 
HETATM 20 O O2' ANP . . . L 3 44.03 152.406 19.641 1 150.81 ? O2' ANP 901 D 1 
HETATM 21 C C1' ANP . . . L 3 44.601 150.586 17.962 1 150.81 ? C1' ANP 901 D 1 
HETATM 22 N N9 ANP . . . L 3 43.463 149.657 17.496 1 150.81 ? N9 ANP 901 D 1 
HETATM 23 C C8 ANP . . . L 3 43.64 148.389 17.019 1 150.81 ? C8 ANP 901 D 1 
HETATM 24 N N7 ANP . . . L 3 42.474 147.847 16.713 1 150.81 ? N7 ANP 901 D 1 
HETATM 25 C C5 ANP . . . L 3 41.524 148.717 16.963 1 150.81 ? C5 ANP 901 D 1 
HETATM 26 C C6 ANP . . . L 3 40.117 148.725 16.866 1 150.81 ? C6 ANP 901 D 1 
HETATM 27 N N6 ANP . . . L 3 39.476 147.649 16.388 1 150.81 ? N6 ANP 901 D 1 
HETATM 28 N N1 ANP . . . L 3 39.394 149.856 17.242 1 150.81 ? N1 ANP 901 D 1 
HETATM 29 C C2 ANP . . . L 3 39.998 150.98 17.735 1 150.81 ? C2 ANP 901 D 1 
HETATM 30 N N3 ANP . . . L 3 41.36 150.986 17.842 1 150.81 ? N3 ANP 901 D 1 
HETATM 31 C C4 ANP . . . L 3 42.147 149.895 17.496 1 150.81 ? C4 ANP 901 D 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    61 
_model_server_stats.query_time_ms           306 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           31 
#