data_3CFD # _model_server_result.job_id fljGCtEjEu0_dGhcQp5IHw _model_server_result.datetime_utc '2024-12-12 12:51:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3cfd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":401}' # _entry.id 3CFD # _exptl.entry_id 3CFD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 91.98 _cell.angle_beta 106.11 _cell.angle_gamma 114.15 _cell.entry_id 3CFD _cell.length_a 59.99 _cell.length_b 72.48 _cell.length_c 77.23 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3CFD _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression C,D,G,J,K 1 1 A,B,E,F,H,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 23 L CYS 23 1_555 A SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? disulf ? disulf2 A SG CYS 134 L CYS 134 1_555 A SG CYS 194 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf3 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? disulf ? disulf4 B SG CYS 147 H CYS 142 1_555 B SG CYS 202 H CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf5 C SG CYS 23 A CYS 23 1_555 C SG CYS 88 A CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? disulf ? disulf6 C SG CYS 134 A CYS 134 1_555 C SG CYS 194 A CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf7 D SG CYS 22 B CYS 22 1_555 D SG CYS 96 B CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? disulf ? disulf8 D SG CYS 147 B CYS 142 1_555 D SG CYS 202 B CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3CFD _atom_sites.fract_transf_matrix[1][1] 0.016669 _atom_sites.fract_transf_matrix[1][2] 0.007474 _atom_sites.fract_transf_matrix[1][3] 0.006166 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01512 _atom_sites.fract_transf_matrix[2][3] 0.002591 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013674 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 SPB H 1 301 301 SPB SPB . F 4 GOL H 1 401 401 GOL GOL . G 3 SPB B 1 302 302 SPB SPB . H 5 HOH L 1 215 215 HOH HOH . H 5 HOH L 2 216 216 HOH HOH . H 5 HOH L 3 217 217 HOH HOH . H 5 HOH L 4 218 218 HOH HOH . H 5 HOH L 5 219 219 HOH HOH . H 5 HOH L 6 220 220 HOH HOH . H 5 HOH L 7 221 221 HOH HOH . H 5 HOH L 8 222 222 HOH HOH . H 5 HOH L 9 223 223 HOH HOH . H 5 HOH L 10 224 224 HOH HOH . H 5 HOH L 11 225 225 HOH HOH . H 5 HOH L 12 226 226 HOH HOH . H 5 HOH L 13 227 227 HOH HOH . H 5 HOH L 14 228 228 HOH HOH . H 5 HOH L 15 229 229 HOH HOH . H 5 HOH L 16 230 230 HOH HOH . H 5 HOH L 17 231 231 HOH HOH . H 5 HOH L 18 232 232 HOH HOH . H 5 HOH L 19 233 233 HOH HOH . H 5 HOH L 20 234 234 HOH HOH . H 5 HOH L 21 235 235 HOH HOH . H 5 HOH L 22 236 236 HOH HOH . H 5 HOH L 23 237 237 HOH HOH . H 5 HOH L 24 238 238 HOH HOH . H 5 HOH L 25 239 239 HOH HOH . H 5 HOH L 26 240 240 HOH HOH . H 5 HOH L 27 241 241 HOH HOH . H 5 HOH L 28 242 242 HOH HOH . H 5 HOH L 29 243 243 HOH HOH . H 5 HOH L 30 244 244 HOH HOH . H 5 HOH L 31 245 245 HOH HOH . H 5 HOH L 32 246 246 HOH HOH . H 5 HOH L 33 247 247 HOH HOH . H 5 HOH L 34 248 248 HOH HOH . H 5 HOH L 35 249 249 HOH HOH . H 5 HOH L 36 250 250 HOH HOH . H 5 HOH L 37 251 251 HOH HOH . I 5 HOH H 1 402 402 HOH HOH . I 5 HOH H 2 403 403 HOH HOH . I 5 HOH H 3 404 404 HOH HOH . I 5 HOH H 4 405 405 HOH HOH . I 5 HOH H 5 406 406 HOH HOH . I 5 HOH H 6 407 407 HOH HOH . I 5 HOH H 7 408 408 HOH HOH . I 5 HOH H 8 409 409 HOH HOH . I 5 HOH H 9 410 410 HOH HOH . I 5 HOH H 10 411 411 HOH HOH . I 5 HOH H 11 412 412 HOH HOH . I 5 HOH H 12 413 413 HOH HOH . I 5 HOH H 13 414 414 HOH HOH . I 5 HOH H 14 415 415 HOH HOH . I 5 HOH H 15 416 416 HOH HOH . I 5 HOH H 16 417 417 HOH HOH . I 5 HOH H 17 418 418 HOH HOH . I 5 HOH H 18 419 419 HOH HOH . I 5 HOH H 19 420 420 HOH HOH . I 5 HOH H 20 421 421 HOH HOH . I 5 HOH H 21 422 422 HOH HOH . I 5 HOH H 22 423 423 HOH HOH . I 5 HOH H 23 424 424 HOH HOH . I 5 HOH H 24 425 425 HOH HOH . I 5 HOH H 25 426 426 HOH HOH . I 5 HOH H 26 427 427 HOH HOH . I 5 HOH H 27 428 428 HOH HOH . I 5 HOH H 28 429 429 HOH HOH . I 5 HOH H 29 430 430 HOH HOH . I 5 HOH H 30 431 431 HOH HOH . I 5 HOH H 31 432 432 HOH HOH . I 5 HOH H 32 433 433 HOH HOH . I 5 HOH H 33 434 434 HOH HOH . I 5 HOH H 34 435 435 HOH HOH . I 5 HOH H 35 436 436 HOH HOH . I 5 HOH H 36 437 437 HOH HOH . J 5 HOH A 1 215 215 HOH HOH . J 5 HOH A 2 216 216 HOH HOH . J 5 HOH A 3 217 217 HOH HOH . J 5 HOH A 4 218 218 HOH HOH . J 5 HOH A 5 219 219 HOH HOH . J 5 HOH A 6 220 220 HOH HOH . J 5 HOH A 7 221 221 HOH HOH . J 5 HOH A 8 222 222 HOH HOH . J 5 HOH A 9 223 223 HOH HOH . J 5 HOH A 10 224 224 HOH HOH . J 5 HOH A 11 225 225 HOH HOH . J 5 HOH A 12 226 226 HOH HOH . J 5 HOH A 13 227 227 HOH HOH . J 5 HOH A 14 228 228 HOH HOH . J 5 HOH A 15 229 229 HOH HOH . J 5 HOH A 16 230 230 HOH HOH . J 5 HOH A 17 231 231 HOH HOH . J 5 HOH A 18 232 232 HOH HOH . J 5 HOH A 19 233 233 HOH HOH . J 5 HOH A 20 234 234 HOH HOH . J 5 HOH A 21 235 235 HOH HOH . J 5 HOH A 22 236 236 HOH HOH . J 5 HOH A 23 237 237 HOH HOH . J 5 HOH A 24 238 238 HOH HOH . J 5 HOH A 25 239 239 HOH HOH . J 5 HOH A 26 240 240 HOH HOH . J 5 HOH A 27 241 241 HOH HOH . J 5 HOH A 28 242 242 HOH HOH . J 5 HOH A 29 243 243 HOH HOH . J 5 HOH A 30 244 244 HOH HOH . J 5 HOH A 31 245 245 HOH HOH . K 5 HOH B 1 303 303 HOH HOH . K 5 HOH B 2 304 304 HOH HOH . K 5 HOH B 3 305 305 HOH HOH . K 5 HOH B 4 306 306 HOH HOH . K 5 HOH B 5 307 307 HOH HOH . K 5 HOH B 6 308 308 HOH HOH . K 5 HOH B 7 309 309 HOH HOH . K 5 HOH B 8 310 310 HOH HOH . K 5 HOH B 9 311 311 HOH HOH . K 5 HOH B 10 312 312 HOH HOH . K 5 HOH B 11 313 313 HOH HOH . K 5 HOH B 12 314 314 HOH HOH . K 5 HOH B 13 315 315 HOH HOH . K 5 HOH B 14 316 316 HOH HOH . K 5 HOH B 15 317 317 HOH HOH . K 5 HOH B 16 318 318 HOH HOH . K 5 HOH B 17 319 319 HOH HOH . K 5 HOH B 18 320 320 HOH HOH . K 5 HOH B 19 321 321 HOH HOH . K 5 HOH B 20 322 322 HOH HOH . K 5 HOH B 21 323 323 HOH HOH . K 5 HOH B 22 324 324 HOH HOH . K 5 HOH B 23 325 325 HOH HOH . K 5 HOH B 24 326 326 HOH HOH . K 5 HOH B 25 327 327 HOH HOH . K 5 HOH B 26 328 328 HOH HOH . K 5 HOH B 27 329 329 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 4 20.845 -28.211 51.898 1 50.12 ? C1 GOL 401 H 1 HETATM 2 O O1 GOL . . . F 4 20.772 -27.553 53.148 1 48.99 ? O1 GOL 401 H 1 HETATM 3 C C2 GOL . . . F 4 20.941 -27.246 50.725 1 49.73 ? C2 GOL 401 H 1 HETATM 4 O O2 GOL . . . F 4 22.283 -26.904 50.503 1 50.59 ? O2 GOL 401 H 1 HETATM 5 C C3 GOL . . . F 4 20.23 -25.942 50.986 1 49.72 ? C3 GOL 401 H 1 HETATM 6 O O3 GOL . . . F 4 19.078 -25.92 50.166 1 50.26 ? O3 GOL 401 H 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 35 _model_server_stats.query_time_ms 337 _model_server_stats.encode_time_ms 22 _model_server_stats.element_count 6 #