data_3CFW # _model_server_result.job_id Ej8a_bzDP-nvpHxdA6K69w _model_server_result.datetime_utc '2024-12-21 13:44:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3cfw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":206}' # _entry.id 3CFW # _exptl.entry_id 3CFW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3CFW _cell.length_a 118.477 _cell.length_b 118.477 _cell.length_c 118.477 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3CFW _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 MAN NAG C1 O1 . O4 HO4 . sing 3 ? 2 4 3 MAN MAN C1 O1 . O3 HO3 . sing 4 ? 2 5 3 BMA MAN C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 157 NAG 2 n B NAG 2 B 2 NAG A 158 NAG 2 n B MAN 3 B 3 MAN A 159 MAN 2 n B MAN 4 B 4 MAN A 161 MAN 2 n B BMA 5 B 5 BMA A 160 BMA # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 19 A CYS 19 1_555 A SG CYS 117 A CYS 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? disulf ? disulf2 A SG CYS 90 A CYS 90 1_555 A SG CYS 109 A CYS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf3 A SG CYS 122 A CYS 122 1_555 A SG CYS 133 A CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf4 A SG CYS 127 A CYS 127 1_555 A SG CYS 142 A CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf5 A SG CYS 144 A CYS 144 1_555 A SG CYS 153 A CYS 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.372 sing covale ? covale2 B O4 NAG . B NAG 2 1_555 B C1 MAN . B MAN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.389 sing covale ? covale3 B O3 MAN . B MAN 3 1_555 B C1 MAN . B MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.406 sing covale ? covale4 B O6 MAN . B MAN 3 1_555 B C1 BMA . B BMA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.405 sing # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 285 n n C1 O1 NAG sing 286 n n C1 O5 NAG sing 287 n n C1 H1 NAG sing 288 n n C2 C3 NAG sing 289 n n C2 N2 NAG sing 290 n n C2 H2 NAG sing 291 n n C3 C4 NAG sing 292 n n C3 O3 NAG sing 293 n n C3 H3 NAG sing 294 n n C4 C5 NAG sing 295 n n C4 O4 NAG sing 296 n n C4 H4 NAG sing 297 n n C5 C6 NAG sing 298 n n C5 O5 NAG sing 299 n n C5 H5 NAG sing 300 n n C6 O6 NAG sing 301 n n C6 H61 NAG sing 302 n n C6 H62 NAG sing 303 n n C7 C8 NAG sing 304 n n C7 N2 NAG sing 305 n n C7 O7 NAG doub 306 n n C8 H81 NAG sing 307 n n C8 H82 NAG sing 308 n n C8 H83 NAG sing 309 n n N2 HN2 NAG sing 310 n n O1 HO1 NAG sing 311 n n O3 HO3 NAG sing 312 n n O4 HO4 NAG sing 313 n n O6 HO6 NAG sing 314 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 3CFW _atom_sites.fract_transf_matrix[1][1] 0.00844 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00844 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00844 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG A 1 206 162 NAG NAG . D 4 CA A 1 207 163 CA CA . E 5 HOH A 1 301 164 HOH HOH . E 5 HOH A 2 302 165 HOH HOH . E 5 HOH A 3 303 166 HOH HOH . E 5 HOH A 4 304 167 HOH HOH . E 5 HOH A 5 305 168 HOH HOH . E 5 HOH A 6 306 169 HOH HOH . E 5 HOH A 7 307 170 HOH HOH . E 5 HOH A 8 308 171 HOH HOH . E 5 HOH A 9 309 172 HOH HOH . E 5 HOH A 10 310 173 HOH HOH . E 5 HOH A 11 311 174 HOH HOH . E 5 HOH A 12 312 175 HOH HOH . E 5 HOH A 13 313 176 HOH HOH . E 5 HOH A 14 314 177 HOH HOH . E 5 HOH A 15 315 178 HOH HOH . E 5 HOH A 16 316 179 HOH HOH . E 5 HOH A 17 317 180 HOH HOH . E 5 HOH A 18 318 181 HOH HOH . E 5 HOH A 19 319 182 HOH HOH . E 5 HOH A 20 320 183 HOH HOH . E 5 HOH A 21 321 184 HOH HOH . E 5 HOH A 22 322 185 HOH HOH . E 5 HOH A 23 323 186 HOH HOH . E 5 HOH A 24 324 187 HOH HOH . E 5 HOH A 25 325 188 HOH HOH . E 5 HOH A 26 326 189 HOH HOH . E 5 HOH A 27 327 190 HOH HOH . E 5 HOH A 28 328 191 HOH HOH . E 5 HOH A 29 329 192 HOH HOH . E 5 HOH A 30 330 193 HOH HOH . E 5 HOH A 31 331 194 HOH HOH . E 5 HOH A 32 332 195 HOH HOH . E 5 HOH A 33 333 196 HOH HOH . E 5 HOH A 34 334 197 HOH HOH . E 5 HOH A 35 335 198 HOH HOH . E 5 HOH A 36 336 199 HOH HOH . E 5 HOH A 37 337 200 HOH HOH . E 5 HOH A 38 338 201 HOH HOH . E 5 HOH A 39 339 202 HOH HOH . E 5 HOH A 40 340 203 HOH HOH . E 5 HOH A 41 341 204 HOH HOH . E 5 HOH A 42 342 205 HOH HOH . E 5 HOH A 43 343 206 HOH HOH . E 5 HOH A 44 344 207 HOH HOH . E 5 HOH A 45 345 208 HOH HOH . E 5 HOH A 46 346 209 HOH HOH . E 5 HOH A 47 347 210 HOH HOH . E 5 HOH A 48 348 211 HOH HOH . E 5 HOH A 49 349 212 HOH HOH . E 5 HOH A 50 350 213 HOH HOH . E 5 HOH A 51 351 214 HOH HOH . E 5 HOH A 52 352 215 HOH HOH . E 5 HOH A 53 353 216 HOH HOH . E 5 HOH A 54 354 217 HOH HOH . E 5 HOH A 55 355 218 HOH HOH . E 5 HOH A 56 356 219 HOH HOH . E 5 HOH A 57 357 220 HOH HOH . E 5 HOH A 58 358 221 HOH HOH . E 5 HOH A 59 359 222 HOH HOH . E 5 HOH A 60 360 223 HOH HOH . E 5 HOH A 61 361 224 HOH HOH . E 5 HOH A 62 362 225 HOH HOH . E 5 HOH A 63 363 226 HOH HOH . E 5 HOH A 64 364 227 HOH HOH . E 5 HOH A 65 365 228 HOH HOH . E 5 HOH A 66 366 229 HOH HOH . E 5 HOH A 67 367 230 HOH HOH . E 5 HOH A 68 368 231 HOH HOH . E 5 HOH A 69 369 232 HOH HOH . E 5 HOH A 70 370 233 HOH HOH . E 5 HOH A 71 371 234 HOH HOH . E 5 HOH A 72 372 235 HOH HOH . E 5 HOH A 73 373 236 HOH HOH . E 5 HOH A 74 374 237 HOH HOH . E 5 HOH A 75 375 238 HOH HOH . E 5 HOH A 76 376 239 HOH HOH . E 5 HOH A 77 377 240 HOH HOH . E 5 HOH A 78 378 241 HOH HOH . E 5 HOH A 79 379 242 HOH HOH . E 5 HOH A 80 380 243 HOH HOH . E 5 HOH A 81 381 244 HOH HOH . E 5 HOH A 82 382 245 HOH HOH . E 5 HOH A 83 383 246 HOH HOH . E 5 HOH A 84 384 247 HOH HOH . E 5 HOH A 85 385 248 HOH HOH . E 5 HOH A 86 386 249 HOH HOH . E 5 HOH A 87 387 250 HOH HOH . E 5 HOH A 88 388 251 HOH HOH . E 5 HOH A 89 389 252 HOH HOH . E 5 HOH A 90 390 253 HOH HOH . E 5 HOH A 91 391 254 HOH HOH . E 5 HOH A 92 392 255 HOH HOH . E 5 HOH A 93 393 256 HOH HOH . E 5 HOH A 94 394 257 HOH HOH . E 5 HOH A 95 395 258 HOH HOH . E 5 HOH A 96 396 259 HOH HOH . E 5 HOH A 97 397 260 HOH HOH . E 5 HOH A 98 398 261 HOH HOH . E 5 HOH A 99 399 262 HOH HOH . E 5 HOH A 100 400 263 HOH HOH . E 5 HOH A 101 401 264 HOH HOH . E 5 HOH A 102 402 265 HOH HOH . E 5 HOH A 103 403 266 HOH HOH . E 5 HOH A 104 404 267 HOH HOH . E 5 HOH A 105 405 268 HOH HOH . E 5 HOH A 106 406 269 HOH HOH . E 5 HOH A 107 407 270 HOH HOH . E 5 HOH A 108 408 271 HOH HOH . E 5 HOH A 109 409 272 HOH HOH . E 5 HOH A 110 410 273 HOH HOH . E 5 HOH A 111 411 274 HOH HOH . E 5 HOH A 112 412 275 HOH HOH . E 5 HOH A 113 413 276 HOH HOH . E 5 HOH A 114 414 277 HOH HOH . E 5 HOH A 115 415 278 HOH HOH . E 5 HOH A 116 416 279 HOH HOH . E 5 HOH A 117 417 280 HOH HOH . E 5 HOH A 118 418 281 HOH HOH . E 5 HOH A 119 419 282 HOH HOH . E 5 HOH A 120 420 283 HOH HOH . E 5 HOH A 121 421 284 HOH HOH . E 5 HOH A 122 422 285 HOH HOH . E 5 HOH A 123 423 286 HOH HOH . E 5 HOH A 124 424 287 HOH HOH . E 5 HOH A 125 425 288 HOH HOH . E 5 HOH A 126 426 289 HOH HOH . E 5 HOH A 127 427 290 HOH HOH . E 5 HOH A 128 428 291 HOH HOH . E 5 HOH A 129 429 292 HOH HOH . E 5 HOH A 130 430 293 HOH HOH . E 5 HOH A 131 431 294 HOH HOH . E 5 HOH A 132 432 295 HOH HOH . E 5 HOH A 133 433 296 HOH HOH . E 5 HOH A 134 434 297 HOH HOH . E 5 HOH A 135 435 298 HOH HOH . E 5 HOH A 136 436 299 HOH HOH . E 5 HOH A 137 437 300 HOH HOH . E 5 HOH A 138 438 301 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . C 3 86.603 66.743 100.732 1 39.31 ? C1 NAG 206 A 1 HETATM 2 C C2 NAG . . . C 3 85.497 66.6 101.795 1 39.73 ? C2 NAG 206 A 1 HETATM 3 C C3 NAG . . . C 3 84.362 65.725 101.233 1 43.45 ? C3 NAG 206 A 1 HETATM 4 C C4 NAG . . . C 3 83.902 66.19 99.853 1 43.94 ? C4 NAG 206 A 1 HETATM 5 C C5 NAG . . . C 3 85.117 66.298 98.939 1 42.13 ? C5 NAG 206 A 1 HETATM 6 C C6 NAG . . . C 3 84.769 66.795 97.578 1 43.86 ? C6 NAG 206 A 1 HETATM 7 C C7 NAG . . . C 3 86.409 66.636 104.04 1 39.58 ? C7 NAG 206 A 1 HETATM 8 C C8 NAG . . . C 3 87.069 65.851 105.179 1 40.29 ? C8 NAG 206 A 1 HETATM 9 N N2 NAG . . . C 3 86.034 65.941 102.968 1 39.22 ? N2 NAG 206 A 1 HETATM 10 O O3 NAG . . . C 3 83.25 65.746 102.118 1 47.81 ? O3 NAG 206 A 1 HETATM 11 O O4 NAG . . . C 3 82.951 65.261 99.323 1 43.51 ? O4 NAG 206 A 1 HETATM 12 O O5 NAG . . . C 3 86.059 67.219 99.491 1 40.64 ? O5 NAG 206 A 1 HETATM 13 O O6 NAG . . . C 3 85.008 65.761 96.642 1 50.44 ? O6 NAG 206 A 1 HETATM 14 O O7 NAG . . . C 3 86.249 67.851 104.144 1 38.82 ? O7 NAG 206 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 14 #