data_3CG9
#
_model_server_result.job_id            WjMGZIW-9L5HHy3XHN1UXg 
_model_server_result.datetime_utc      '2025-02-18 16:57:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3cg9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":1001}' 
#
_entry.id    3CG9 
#
_exptl.entry_id    3CG9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              164.156 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            alpha-L-rhamnopyranose 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3CG9 
_cell.length_a            90.255 
_cell.length_b            101.995 
_cell.length_c            164.082 
_cell.Z_PDB               32 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3CG9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 130 A CYS 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf2 A SG CYS 22 A CYS 22 1_555 A SG CYS 67 A CYS 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? 
disulf ? disulf3 A SG CYS 43 A CYS 43 1_555 A SG CYS 49 A CYS 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf4 B SG CYS 6 B CYS 6 1_555 B SG CYS 130 B CYS 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf5 B SG CYS 22 B CYS 22 1_555 B SG CYS 67 B CYS 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf6 B SG CYS 43 B CYS 43 1_555 B SG CYS 49 B CYS 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf7 C SG CYS 6 C CYS 6 1_555 C SG CYS 130 C CYS 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf8 C SG CYS 22 C CYS 22 1_555 C SG CYS 67 C CYS 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf9 C SG CYS 43 C CYS 43 1_555 C SG CYS 49 C CYS 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf10 D SG CYS 6 D CYS 6 1_555 D SG CYS 130 D CYS 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf11 D SG CYS 22 D CYS 22 1_555 D SG CYS 67 D CYS 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf12 D SG CYS 43 D CYS 43 1_555 D SG CYS 49 D CYS 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
#
_chem_comp.formula           'C6 H12 O5' 
_chem_comp.formula_weight    164.156 
_chem_comp.id                RAM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              alpha-L-rhamnopyranose 
_chem_comp.type              'l-saccharide, alpha linking' 
_chem_comp.pdbx_synonyms     alpha-L-rhamnose;6-deoxy-alpha-L-mannopyranose;L-rhamnose;rhamnose 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 RAM sing 277 n n 
C1 O1 RAM sing 278 n n 
C1 O5 RAM sing 279 n n 
C1 H1 RAM sing 280 n n 
C2 C3 RAM sing 281 n n 
C2 O2 RAM sing 282 n n 
C2 H2 RAM sing 283 n n 
C3 C4 RAM sing 284 n n 
C3 O3 RAM sing 285 n n 
C3 H3 RAM sing 286 n n 
C4 C5 RAM sing 287 n n 
C4 O4 RAM sing 288 n n 
C4 H4 RAM sing 289 n n 
C5 C6 RAM sing 290 n n 
C5 O5 RAM sing 291 n n 
C5 H5 RAM sing 292 n n 
C6 H61 RAM sing 293 n n 
C6 H62 RAM sing 294 n n 
C6 H63 RAM sing 295 n n 
O1 HO1 RAM sing 296 n n 
O2 HO2 RAM sing 297 n n 
O3 HO3 RAM sing 298 n n 
O4 HO4 RAM sing 299 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
RAM LRhapa 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
RAM a-L-rhamnopyranose 'COMMON NAME' GMML 1 
RAM a-L-Rhap 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
RAM Rha 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     3CG9 
_atom_sites.fract_transf_matrix[1][1]    0.01108 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009804 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006095 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 RAM A 1 1002 1002 RAM RAM . 
F 2 RAM B 1 1001 1001 RAM RAM . 
G 3 TLA C 1 172 172 TLA TLA . 
H 4 HOH A 1 1003 172 HOH HOH . 
H 4 HOH A 2 1004 173 HOH HOH . 
H 4 HOH A 3 1005 174 HOH HOH . 
H 4 HOH A 4 1006 176 HOH HOH . 
H 4 HOH A 5 1007 177 HOH HOH . 
H 4 HOH A 6 1008 179 HOH HOH . 
H 4 HOH A 7 1009 180 HOH HOH . 
H 4 HOH A 8 1010 181 HOH HOH . 
H 4 HOH A 9 1011 182 HOH HOH . 
H 4 HOH A 10 1012 183 HOH HOH . 
H 4 HOH A 11 1013 184 HOH HOH . 
H 4 HOH A 12 1014 186 HOH HOH . 
H 4 HOH A 13 1015 187 HOH HOH . 
H 4 HOH A 14 1016 188 HOH HOH . 
H 4 HOH A 15 1017 189 HOH HOH . 
H 4 HOH A 16 1018 190 HOH HOH . 
H 4 HOH A 17 1019 191 HOH HOH . 
H 4 HOH A 18 1020 189 HOH HOH . 
H 4 HOH A 19 1021 190 HOH HOH . 
H 4 HOH A 20 1022 196 HOH HOH . 
H 4 HOH A 21 1023 173 HOH HOH . 
H 4 HOH A 22 1024 188 HOH HOH . 
H 4 HOH A 23 1025 190 HOH HOH . 
H 4 HOH A 24 1026 173 HOH HOH . 
H 4 HOH A 25 1027 195 HOH HOH . 
H 4 HOH A 26 1028 201 HOH HOH . 
H 4 HOH A 27 1029 202 HOH HOH . 
H 4 HOH A 28 1030 206 HOH HOH . 
H 4 HOH A 29 1031 209 HOH HOH . 
H 4 HOH A 30 1032 210 HOH HOH . 
H 4 HOH A 31 1033 217 HOH HOH . 
H 4 HOH A 32 1034 218 HOH HOH . 
I 4 HOH B 1 1002 185 HOH HOH . 
I 4 HOH B 2 1003 172 HOH HOH . 
I 4 HOH B 3 1004 174 HOH HOH . 
I 4 HOH B 4 1005 175 HOH HOH . 
I 4 HOH B 5 1006 176 HOH HOH . 
I 4 HOH B 6 1007 177 HOH HOH . 
I 4 HOH B 7 1008 178 HOH HOH . 
I 4 HOH B 8 1009 179 HOH HOH . 
I 4 HOH B 9 1010 180 HOH HOH . 
I 4 HOH B 10 1011 181 HOH HOH . 
I 4 HOH B 11 1012 182 HOH HOH . 
I 4 HOH B 12 1013 183 HOH HOH . 
I 4 HOH B 13 1014 184 HOH HOH . 
I 4 HOH B 14 1015 185 HOH HOH . 
I 4 HOH B 15 1016 186 HOH HOH . 
I 4 HOH B 16 1017 187 HOH HOH . 
I 4 HOH B 17 1018 188 HOH HOH . 
I 4 HOH B 18 1019 191 HOH HOH . 
I 4 HOH B 19 1020 192 HOH HOH . 
I 4 HOH B 20 1021 193 HOH HOH . 
I 4 HOH B 21 1022 194 HOH HOH . 
I 4 HOH B 22 1023 195 HOH HOH . 
I 4 HOH B 23 1024 197 HOH HOH . 
I 4 HOH B 24 1025 200 HOH HOH . 
I 4 HOH B 25 1026 204 HOH HOH . 
J 4 HOH C 1 178 178 HOH HOH . 
J 4 HOH C 2 179 172 HOH HOH . 
J 4 HOH C 3 180 174 HOH HOH . 
J 4 HOH C 4 181 175 HOH HOH . 
J 4 HOH C 5 182 176 HOH HOH . 
J 4 HOH C 6 183 177 HOH HOH . 
J 4 HOH C 7 184 178 HOH HOH . 
J 4 HOH C 8 185 179 HOH HOH . 
J 4 HOH C 9 186 180 HOH HOH . 
J 4 HOH C 10 187 181 HOH HOH . 
J 4 HOH C 11 188 182 HOH HOH . 
J 4 HOH C 12 189 183 HOH HOH . 
J 4 HOH C 13 190 184 HOH HOH . 
J 4 HOH C 14 191 185 HOH HOH . 
J 4 HOH C 15 192 186 HOH HOH . 
J 4 HOH C 16 193 187 HOH HOH . 
J 4 HOH C 17 194 189 HOH HOH . 
J 4 HOH C 18 195 191 HOH HOH . 
J 4 HOH C 19 196 192 HOH HOH . 
J 4 HOH C 20 197 185 HOH HOH . 
J 4 HOH C 21 198 188 HOH HOH . 
J 4 HOH C 22 199 191 HOH HOH . 
J 4 HOH C 23 200 192 HOH HOH . 
J 4 HOH C 24 201 193 HOH HOH . 
J 4 HOH C 25 202 194 HOH HOH . 
J 4 HOH C 26 203 196 HOH HOH . 
J 4 HOH C 27 204 197 HOH HOH . 
J 4 HOH C 28 205 198 HOH HOH . 
J 4 HOH C 29 206 205 HOH HOH . 
J 4 HOH C 30 207 213 HOH HOH . 
J 4 HOH C 31 208 214 HOH HOH . 
J 4 HOH C 32 209 215 HOH HOH . 
J 4 HOH C 33 210 216 HOH HOH . 
K 4 HOH D 1 175 175 HOH HOH . 
K 4 HOH D 2 176 173 HOH HOH . 
K 4 HOH D 3 177 172 HOH HOH . 
K 4 HOH D 4 178 174 HOH HOH . 
K 4 HOH D 5 179 175 HOH HOH . 
K 4 HOH D 6 180 176 HOH HOH . 
K 4 HOH D 7 181 177 HOH HOH . 
K 4 HOH D 8 182 178 HOH HOH . 
K 4 HOH D 9 183 179 HOH HOH . 
K 4 HOH D 10 184 180 HOH HOH . 
K 4 HOH D 11 185 181 HOH HOH . 
K 4 HOH D 12 186 182 HOH HOH . 
K 4 HOH D 13 187 183 HOH HOH . 
K 4 HOH D 14 188 184 HOH HOH . 
K 4 HOH D 15 189 186 HOH HOH . 
K 4 HOH D 16 190 187 HOH HOH . 
K 4 HOH D 17 191 189 HOH HOH . 
K 4 HOH D 18 192 190 HOH HOH . 
K 4 HOH D 19 193 199 HOH HOH . 
K 4 HOH D 20 194 203 HOH HOH . 
K 4 HOH D 21 195 207 HOH HOH . 
K 4 HOH D 22 196 208 HOH HOH . 
K 4 HOH D 23 197 211 HOH HOH . 
K 4 HOH D 24 198 212 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 RAM . . . F 2 -8.666 -40.147 -74.935 0.5 56.11 ? C1 RAM 1001 B 1 
HETATM 2 C C2 RAM . . . F 2 -8.988 -38.688 -75.343 0.5 56.04 ? C2 RAM 1001 B 1 
HETATM 3 C C3 RAM . . . F 2 -7.743 -37.829 -75.036 0.5 56 ? C3 RAM 1001 B 1 
HETATM 4 C C4 RAM . . . F 2 -6.539 -38.371 -75.818 0.5 55.97 ? C4 RAM 1001 B 1 
HETATM 5 C C5 RAM . . . F 2 -6.296 -39.858 -75.399 0.5 56.01 ? C5 RAM 1001 B 1 
HETATM 6 C C6 RAM . . . F 2 -5.088 -40.422 -76.202 0.5 55.81 ? C6 RAM 1001 B 1 
HETATM 7 O O1 RAM . . . F 2 -8.418 -40.241 -73.522 0.5 56.28 ? O1 RAM 1001 B 1 
HETATM 8 O O2 RAM . . . F 2 -9.263 -38.655 -76.76 0.5 55.92 ? O2 RAM 1001 B 1 
HETATM 9 O O3 RAM . . . F 2 -7.993 -36.482 -75.413 0.5 56.22 ? O3 RAM 1001 B 1 
HETATM 10 O O4 RAM . . . F 2 -5.388 -37.554 -75.502 0.5 55.95 ? O4 RAM 1001 B 1 
HETATM 11 O O5 RAM . . . F 2 -7.488 -40.639 -75.701 0.5 56.09 ? O5 RAM 1001 B 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           322 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           11 
#