data_3CGA # _model_server_result.job_id 6yQWM1XzxHSZfHrksPxCfg _model_server_result.datetime_utc '2024-12-21 12:32:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3cga # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":103}' # _entry.id 3CGA # _exptl.entry_id 3CGA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3CGA _cell.length_a 47.107 _cell.length_b 47.107 _cell.length_c 176.2 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3CGA _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O SER 20 A SER 20 1_555 D CA CA . A CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? metalc ? metalc2 A O GLU 23 A GLU 23 1_555 D CA CA . A CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.544 ? metalc ? metalc3 A O ASP 25 A ASP 25 1_555 D CA CA . A CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? metalc ? metalc4 A O LYS 28 A LYS 28 1_555 D CA CA . A CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.641 ? metalc ? metalc5 A OE1 GLU 33 A GLU 33 1_555 D CA CA . A CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.774 ? metalc ? metalc6 A OE2 GLU 33 A GLU 33 1_555 D CA CA . A CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? metalc ? metalc7 A OD1 ASP 63 A ASP 63 1_555 C CA CA . A CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc8 A OD1 ASN 65 A ASN 65 1_555 C CA CA . A CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? metalc ? metalc9 A OD1 ASP 67 A ASP 67 1_555 C CA CA . A CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.746 ? metalc ? metalc10 A O GLU 69 A GLU 69 1_555 C CA CA . A CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc11 A OE1 GLU 74 A GLU 74 1_555 C CA CA . A CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc12 A OE2 GLU 74 A GLU 74 1_555 C CA CA . A CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.614 ? metalc ? metalc13 D CA CA . A CA 103 1_555 G O HOH . A HOH 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? metalc ? metalc14 B O SER 20 B SER 20 1_555 E CA CA . B CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc15 B O GLU 23 B GLU 23 1_555 E CA CA . B CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc16 B O ASP 25 B ASP 25 1_555 E CA CA . B CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? metalc ? metalc17 B O LYS 28 B LYS 28 1_555 E CA CA . B CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.489 ? metalc ? metalc18 B OE1 GLU 33 B GLU 33 1_555 E CA CA . B CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? metalc ? metalc19 B OE2 GLU 33 B GLU 33 1_555 E CA CA . B CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.708 ? metalc ? metalc20 B OD1 ASP 63 B ASP 63 1_555 F CA CA . B CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? metalc ? metalc21 B OD1 ASN 65 B ASN 65 1_555 F CA CA . B CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? metalc ? metalc22 B OD1 ASP 67 B ASP 67 1_555 F CA CA . B CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.79 ? metalc ? metalc23 B O GLU 69 B GLU 69 1_555 F CA CA . B CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc24 B OE1 GLU 74 B GLU 74 1_555 F CA CA . B CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? metalc ? metalc25 B OE2 GLU 74 B GLU 74 1_555 F CA CA . B CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3CGA _atom_sites.fract_transf_matrix[1][1] 0.021228 _atom_sites.fract_transf_matrix[1][2] 0.012256 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024512 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005675 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CA A 1 102 1 CA CA . D 2 CA A 1 103 2 CA CA . E 2 CA B 1 102 3 CA CA . F 2 CA B 1 103 4 CA CA . G 3 HOH A 1 104 5 HOH HOH . G 3 HOH A 2 105 10 HOH HOH . G 3 HOH A 3 106 12 HOH HOH . G 3 HOH A 4 107 15 HOH HOH . G 3 HOH A 5 108 17 HOH HOH . G 3 HOH A 6 109 19 HOH HOH . G 3 HOH A 7 110 20 HOH HOH . G 3 HOH A 8 111 21 HOH HOH . G 3 HOH A 9 112 26 HOH HOH . G 3 HOH A 10 113 32 HOH HOH . G 3 HOH A 11 114 33 HOH HOH . G 3 HOH A 12 115 34 HOH HOH . G 3 HOH A 13 116 36 HOH HOH . G 3 HOH A 14 117 37 HOH HOH . G 3 HOH A 15 118 41 HOH HOH . G 3 HOH A 16 119 44 HOH HOH . G 3 HOH A 17 120 46 HOH HOH . G 3 HOH A 18 121 47 HOH HOH . G 3 HOH A 19 122 50 HOH HOH . G 3 HOH A 20 123 51 HOH HOH . G 3 HOH A 21 124 52 HOH HOH . G 3 HOH A 22 125 29 HOH HOH . H 3 HOH B 1 104 1 HOH HOH . H 3 HOH B 2 105 2 HOH HOH . H 3 HOH B 3 106 3 HOH HOH . H 3 HOH B 4 107 4 HOH HOH . H 3 HOH B 5 108 7 HOH HOH . H 3 HOH B 6 109 8 HOH HOH . H 3 HOH B 7 110 9 HOH HOH . H 3 HOH B 8 111 11 HOH HOH . H 3 HOH B 9 112 13 HOH HOH . H 3 HOH B 10 113 14 HOH HOH . H 3 HOH B 11 114 16 HOH HOH . H 3 HOH B 12 115 18 HOH HOH . H 3 HOH B 13 116 22 HOH HOH . H 3 HOH B 14 117 23 HOH HOH . H 3 HOH B 15 118 24 HOH HOH . H 3 HOH B 16 119 25 HOH HOH . H 3 HOH B 17 120 27 HOH HOH . H 3 HOH B 18 121 28 HOH HOH . H 3 HOH B 19 123 30 HOH HOH . H 3 HOH B 20 124 31 HOH HOH . H 3 HOH B 21 125 35 HOH HOH . H 3 HOH B 22 126 38 HOH HOH . H 3 HOH B 23 127 39 HOH HOH . H 3 HOH B 24 128 40 HOH HOH . H 3 HOH B 25 129 42 HOH HOH . H 3 HOH B 26 130 43 HOH HOH . H 3 HOH B 27 131 45 HOH HOH . H 3 HOH B 28 132 48 HOH HOH . H 3 HOH B 29 133 49 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 6.832 _atom_site.Cartn_y -18.705 _atom_site.Cartn_z -15.798 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 2.43 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 103 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #