data_3CGM
#
_model_server_result.job_id            gBMcPHqsOUJyn-zpWLcVaA 
_model_server_result.datetime_utc      '2025-03-09 04:21:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3cgm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":166}' 
#
_entry.id    3CGM 
#
_exptl.entry_id    3CGM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3CGM 
_cell.length_a            121.78 
_cell.length_b            121.78 
_cell.length_c            76.26 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3CGM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        182 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 63 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
PISA hexameric 6 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K 1 1 
A,B,C,D,E,F,G,H,I,J,K 2 1,2,3,4,5,6 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 10_554 -y,-x,-z-1/2 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 0 0 -38.13 
3 'crystal symmetry operation' 2_545 -y,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 60.89 -105.464574 0 
4 'crystal symmetry operation' 12_544 x,x-y-1,-z-1/2 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 60.89 -105.464574 -38.13 
5 'crystal symmetry operation' 3_655 -x+y+1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 121.78 0 0 
6 'crystal symmetry operation' 11_654 -x+y+1,y,-z-1/2 -1 0 0 0 1 0 0 0 -1 121.78 0 -38.13 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 I N N 
? 4 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A ND1 HIS 145 A HIS 145 1_555 G NI NI . A NI 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? 
metalc ? metalc2 A NE2 HIS 147 A HIS 147 1_555 G NI NI . A NI 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? 
metalc ? metalc3 A NE2 HIS 149 A HIS 149 1_555 G NI NI . A NI 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? 
metalc ? metalc4 A NE2 HIS 155 A HIS 155 1_555 G NI NI . A NI 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? 
metalc ? metalc5 A NE2 HIS 157 A HIS 157 1_555 G NI NI . A NI 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 116 n n 
C1 C2 GOL sing 117 n n 
C1 H11 GOL sing 118 n n 
C1 H12 GOL sing 119 n n 
O1 HO1 GOL sing 120 n n 
C2 O2 GOL sing 121 n n 
C2 C3 GOL sing 122 n n 
C2 H2 GOL sing 123 n n 
O2 HO2 GOL sing 124 n n 
C3 O3 GOL sing 125 n n 
C3 H31 GOL sing 126 n n 
C3 H32 GOL sing 127 n n 
O3 HO3 GOL sing 128 n n 
#
_atom_sites.entry_id                     3CGM 
_atom_sites.fract_transf_matrix[1][1]    0.008212 
_atom_sites.fract_transf_matrix[1][2]    0.004741 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009482 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013113 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SCN A 1 159 1 SCN SCN . 
C 2 SCN A 1 160 2 SCN SCN . 
D 2 SCN A 1 161 4 SCN SCN . 
E 2 SCN A 1 162 5 SCN SCN . 
F 2 SCN A 1 163 6 SCN SCN . 
G 3 NI A 1 164 7 NI NI . 
H 2 SCN A 1 165 8 SCN SCN . 
I 4 GOL A 1 166 9 GOL GOL . 
J 4 GOL A 1 167 10 GOL GOL . 
K 5 HOH A 1 168 1 HOH HOH . 
K 5 HOH A 2 169 2 HOH HOH . 
K 5 HOH A 3 170 3 HOH HOH . 
K 5 HOH A 4 171 4 HOH HOH . 
K 5 HOH A 5 172 5 HOH HOH . 
K 5 HOH A 6 173 6 HOH HOH . 
K 5 HOH A 7 174 7 HOH HOH . 
K 5 HOH A 8 175 8 HOH HOH . 
K 5 HOH A 9 176 9 HOH HOH . 
K 5 HOH A 10 177 10 HOH HOH . 
K 5 HOH A 11 178 11 HOH HOH . 
K 5 HOH A 12 179 12 HOH HOH . 
K 5 HOH A 13 180 13 HOH HOH . 
K 5 HOH A 14 181 14 HOH HOH . 
K 5 HOH A 15 182 15 HOH HOH . 
K 5 HOH A 16 183 16 HOH HOH . 
K 5 HOH A 17 184 17 HOH HOH . 
K 5 HOH A 18 185 18 HOH HOH . 
K 5 HOH A 19 186 19 HOH HOH . 
K 5 HOH A 20 187 20 HOH HOH . 
K 5 HOH A 21 188 21 HOH HOH . 
K 5 HOH A 22 189 22 HOH HOH . 
K 5 HOH A 23 190 23 HOH HOH . 
K 5 HOH A 24 191 24 HOH HOH . 
K 5 HOH A 25 192 25 HOH HOH . 
K 5 HOH A 26 193 26 HOH HOH . 
K 5 HOH A 27 194 27 HOH HOH . 
K 5 HOH A 28 195 28 HOH HOH . 
K 5 HOH A 29 196 29 HOH HOH . 
K 5 HOH A 30 197 30 HOH HOH . 
K 5 HOH A 31 198 31 HOH HOH . 
K 5 HOH A 32 199 32 HOH HOH . 
K 5 HOH A 33 200 33 HOH HOH . 
K 5 HOH A 34 201 34 HOH HOH . 
K 5 HOH A 35 202 35 HOH HOH . 
K 5 HOH A 36 203 36 HOH HOH . 
K 5 HOH A 37 204 37 HOH HOH . 
K 5 HOH A 38 205 38 HOH HOH . 
K 5 HOH A 39 206 39 HOH HOH . 
K 5 HOH A 40 207 40 HOH HOH . 
K 5 HOH A 41 208 41 HOH HOH . 
K 5 HOH A 42 209 42 HOH HOH . 
K 5 HOH A 43 210 43 HOH HOH . 
K 5 HOH A 44 211 44 HOH HOH . 
K 5 HOH A 45 212 45 HOH HOH . 
K 5 HOH A 46 213 46 HOH HOH . 
K 5 HOH A 47 214 47 HOH HOH . 
K 5 HOH A 48 215 48 HOH HOH . 
K 5 HOH A 49 216 49 HOH HOH . 
K 5 HOH A 50 217 50 HOH HOH . 
K 5 HOH A 51 218 51 HOH HOH . 
K 5 HOH A 52 219 52 HOH HOH . 
K 5 HOH A 53 220 53 HOH HOH . 
K 5 HOH A 54 221 54 HOH HOH . 
K 5 HOH A 55 222 55 HOH HOH . 
K 5 HOH A 56 223 56 HOH HOH . 
K 5 HOH A 57 224 57 HOH HOH . 
K 5 HOH A 58 225 58 HOH HOH . 
K 5 HOH A 59 226 59 HOH HOH . 
K 5 HOH A 60 227 60 HOH HOH . 
K 5 HOH A 61 228 61 HOH HOH . 
K 5 HOH A 62 229 62 HOH HOH . 
K 5 HOH A 63 230 63 HOH HOH . 
K 5 HOH A 64 231 64 HOH HOH . 
K 5 HOH A 65 232 65 HOH HOH . 
K 5 HOH A 66 233 66 HOH HOH . 
K 5 HOH A 67 234 67 HOH HOH . 
K 5 HOH A 68 235 68 HOH HOH . 
K 5 HOH A 69 236 69 HOH HOH . 
K 5 HOH A 70 237 70 HOH HOH . 
K 5 HOH A 71 238 71 HOH HOH . 
K 5 HOH A 72 239 72 HOH HOH . 
K 5 HOH A 73 240 73 HOH HOH . 
K 5 HOH A 74 241 74 HOH HOH . 
K 5 HOH A 75 242 75 HOH HOH . 
K 5 HOH A 76 243 76 HOH HOH . 
K 5 HOH A 77 244 77 HOH HOH . 
K 5 HOH A 78 245 78 HOH HOH . 
K 5 HOH A 79 246 79 HOH HOH . 
K 5 HOH A 80 247 80 HOH HOH . 
K 5 HOH A 81 248 81 HOH HOH . 
K 5 HOH A 82 249 82 HOH HOH . 
K 5 HOH A 83 250 83 HOH HOH . 
K 5 HOH A 84 251 84 HOH HOH . 
K 5 HOH A 85 252 85 HOH HOH . 
K 5 HOH A 86 253 86 HOH HOH . 
K 5 HOH A 87 254 87 HOH HOH . 
K 5 HOH A 88 255 88 HOH HOH . 
K 5 HOH A 89 256 89 HOH HOH . 
K 5 HOH A 90 257 90 HOH HOH . 
K 5 HOH A 91 258 91 HOH HOH . 
K 5 HOH A 92 259 92 HOH HOH . 
K 5 HOH A 93 260 93 HOH HOH . 
K 5 HOH A 94 261 94 HOH HOH . 
K 5 HOH A 95 262 95 HOH HOH . 
K 5 HOH A 96 263 96 HOH HOH . 
K 5 HOH A 97 264 97 HOH HOH . 
K 5 HOH A 98 265 98 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . I 4 39.755 -43.57 -13.913 1 64.21 ? C1 GOL 166 A 1 
HETATM 2 O O1 GOL . . . I 4 40.029 -44.933 -13.665 1 64.36 ? O1 GOL 166 A 1 
HETATM 3 C C2 GOL . . . I 4 40.014 -42.806 -12.626 1 63.16 ? C2 GOL 166 A 1 
HETATM 4 O O2 GOL . . . I 4 41.011 -43.531 -11.939 1 62.47 ? O2 GOL 166 A 1 
HETATM 5 C C3 GOL . . . I 4 40.457 -41.378 -12.954 1 63.36 ? C3 GOL 166 A 1 
HETATM 6 O O3 GOL . . . I 4 39.815 -40.393 -12.158 1 61.89 ? O3 GOL 166 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           281 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           6 
#