data_3CGO # _model_server_result.job_id 10wHLCTfJGd4W-rXb-1_9Q _model_server_result.datetime_utc '2025-02-05 14:59:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3cgo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":510}' # _entry.id 3CGO # _exptl.entry_id 3CGO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 365.432 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-{4-[(4-imidazo[1,2-a]pyridin-3-ylpyrimidin-2-yl)amino]piperidin-1-yl}-N-methylacetamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3CGO _cell.length_a 52.22 _cell.length_b 71.77 _cell.length_c 107.72 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3CGO _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C19 H23 N7 O' _chem_comp.formula_weight 365.432 _chem_comp.id JNO _chem_comp.mon_nstd_flag . _chem_comp.name 2-{4-[(4-imidazo[1,2-a]pyridin-3-ylpyrimidin-2-yl)amino]piperidin-1-yl}-N-methylacetamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 N02 JNO sing 173 n n N02 C03 JNO sing 174 n n C03 O04 JNO doub 175 n n C03 C05 JNO sing 176 n n C05 N06 JNO sing 177 n n N06 C07 JNO sing 178 n n N06 C11 JNO sing 179 n n C07 C08 JNO sing 180 n n C08 C09 JNO sing 181 n n C09 C10 JNO sing 182 n n C09 N12 JNO sing 183 n n C10 C11 JNO sing 184 n n N12 C13 JNO sing 185 n n C13 N14 JNO doub 186 n y C13 N18 JNO sing 187 n y N14 C15 JNO sing 188 n y C15 C16 JNO doub 189 n y C15 C19 JNO sing 190 n y C16 C17 JNO sing 191 n y C17 N18 JNO doub 192 n y C19 N20 JNO sing 193 n y C19 C27 JNO doub 194 n y N20 C21 JNO sing 195 n y N20 C25 JNO sing 196 n y C21 C22 JNO doub 197 n y C22 C23 JNO sing 198 n y C23 C24 JNO doub 199 n y C24 C25 JNO sing 200 n y C25 N26 JNO doub 201 n y N26 C27 JNO sing 202 n y C01 H01 JNO sing 203 n n C01 H01A JNO sing 204 n n C01 H01B JNO sing 205 n n N02 HN02 JNO sing 206 n n C05 H05 JNO sing 207 n n C05 H05A JNO sing 208 n n C07 H07 JNO sing 209 n n C07 H07A JNO sing 210 n n C08 H08 JNO sing 211 n n C08 H08A JNO sing 212 n n C09 H09 JNO sing 213 n n C10 H10 JNO sing 214 n n C10 H10A JNO sing 215 n n C11 H11 JNO sing 216 n n C11 H11A JNO sing 217 n n N12 HN12 JNO sing 218 n n C16 H16 JNO sing 219 n n C17 H17 JNO sing 220 n n C21 H21 JNO sing 221 n n C22 H22 JNO sing 222 n n C23 H23 JNO sing 223 n n C24 H24 JNO sing 224 n n C27 H27 JNO sing 225 n n # _atom_sites.entry_id 3CGO _atom_sites.fract_transf_matrix[1][1] 0.01915 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013933 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009283 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 JNO A 1 510 510 JNO J10 . C 3 HOH A 1 511 1 HOH WAT . C 3 HOH A 2 512 2 HOH WAT . C 3 HOH A 3 513 3 HOH WAT . C 3 HOH A 4 514 4 HOH WAT . C 3 HOH A 5 515 5 HOH WAT . C 3 HOH A 6 516 6 HOH WAT . C 3 HOH A 7 517 7 HOH WAT . C 3 HOH A 8 518 8 HOH WAT . C 3 HOH A 9 519 9 HOH WAT . C 3 HOH A 10 520 10 HOH WAT . C 3 HOH A 11 521 11 HOH WAT . C 3 HOH A 12 522 12 HOH WAT . C 3 HOH A 13 523 13 HOH WAT . C 3 HOH A 14 524 14 HOH WAT . C 3 HOH A 15 525 15 HOH WAT . C 3 HOH A 16 526 16 HOH WAT . C 3 HOH A 17 527 17 HOH WAT . C 3 HOH A 18 528 18 HOH WAT . C 3 HOH A 19 529 19 HOH WAT . C 3 HOH A 20 530 20 HOH WAT . C 3 HOH A 21 531 21 HOH WAT . C 3 HOH A 22 532 22 HOH WAT . C 3 HOH A 23 533 23 HOH WAT . C 3 HOH A 24 534 24 HOH WAT . C 3 HOH A 25 535 25 HOH WAT . C 3 HOH A 26 536 26 HOH WAT . C 3 HOH A 27 537 27 HOH WAT . C 3 HOH A 28 538 28 HOH WAT . C 3 HOH A 29 539 29 HOH WAT . C 3 HOH A 30 540 30 HOH WAT . C 3 HOH A 31 541 31 HOH WAT . C 3 HOH A 32 542 32 HOH WAT . C 3 HOH A 33 543 33 HOH WAT . C 3 HOH A 34 544 35 HOH WAT . C 3 HOH A 35 545 36 HOH WAT . C 3 HOH A 36 546 37 HOH WAT . C 3 HOH A 37 547 38 HOH WAT . C 3 HOH A 38 548 39 HOH WAT . C 3 HOH A 39 549 40 HOH WAT . C 3 HOH A 40 550 41 HOH WAT . C 3 HOH A 41 551 42 HOH WAT . C 3 HOH A 42 552 43 HOH WAT . C 3 HOH A 43 553 44 HOH WAT . C 3 HOH A 44 554 45 HOH WAT . C 3 HOH A 45 555 46 HOH WAT . C 3 HOH A 46 556 47 HOH WAT . C 3 HOH A 47 557 48 HOH WAT . C 3 HOH A 48 558 49 HOH WAT . C 3 HOH A 49 559 50 HOH WAT . C 3 HOH A 50 560 51 HOH WAT . C 3 HOH A 51 561 52 HOH WAT . C 3 HOH A 52 562 53 HOH WAT . C 3 HOH A 53 563 54 HOH WAT . C 3 HOH A 54 564 55 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 JNO . . . B 2 26.805 2.486 28.498 1 21.53 ? C01 JNO 510 A 1 HETATM 2 N N02 JNO . . . B 2 26.368 3.836 28.246 1 22.92 ? N02 JNO 510 A 1 HETATM 3 C C03 JNO . . . B 2 27.264 4.906 28.251 1 29.02 ? C03 JNO 510 A 1 HETATM 4 O O04 JNO . . . B 2 28.416 4.849 27.817 1 34.57 ? O04 JNO 510 A 1 HETATM 5 C C05 JNO . . . B 2 26.688 6.178 28.849 1 26.22 ? C05 JNO 510 A 1 HETATM 6 N N06 JNO . . . B 2 25.402 5.907 29.508 1 28.45 ? N06 JNO 510 A 1 HETATM 7 C C07 JNO . . . B 2 24.46 7.047 29.338 1 26.28 ? C07 JNO 510 A 1 HETATM 8 C C08 JNO . . . B 2 23.124 6.775 30.041 1 23.41 ? C08 JNO 510 A 1 HETATM 9 C C09 JNO . . . B 2 23.385 6.496 31.539 1 23.92 ? C09 JNO 510 A 1 HETATM 10 C C10 JNO . . . B 2 24.318 5.286 31.675 1 20.98 ? C10 JNO 510 A 1 HETATM 11 C C11 JNO . . . B 2 25.641 5.573 30.95 1 24.84 ? C11 JNO 510 A 1 HETATM 12 N N12 JNO . . . B 2 22.123 6.246 32.213 1 24.64 ? N12 JNO 510 A 1 HETATM 13 C C13 JNO . . . B 2 21.225 7.246 32.571 1 23.16 ? C13 JNO 510 A 1 HETATM 14 N N14 JNO . . . B 2 21.635 8.536 32.42 1 22.84 ? N14 JNO 510 A 1 HETATM 15 C C15 JNO . . . B 2 20.752 9.541 32.769 1 28.07 ? C15 JNO 510 A 1 HETATM 16 C C16 JNO . . . B 2 19.46 9.276 33.263 1 27.65 ? C16 JNO 510 A 1 HETATM 17 C C17 JNO . . . B 2 19.147 7.936 33.373 1 23.94 ? C17 JNO 510 A 1 HETATM 18 N N18 JNO . . . B 2 19.993 6.92 33.036 1 24.39 ? N18 JNO 510 A 1 HETATM 19 C C19 JNO . . . B 2 21.227 10.932 32.567 1 22.09 ? C19 JNO 510 A 1 HETATM 20 N N20 JNO . . . B 2 22.453 11.345 32.05 1 26.75 ? N20 JNO 510 A 1 HETATM 21 C C21 JNO . . . B 2 23.578 10.609 31.575 1 24.43 ? C21 JNO 510 A 1 HETATM 22 C C22 JNO . . . B 2 24.671 11.268 31.105 1 24.72 ? C22 JNO 510 A 1 HETATM 23 C C23 JNO . . . B 2 24.665 12.734 31.103 1 21.85 ? C23 JNO 510 A 1 HETATM 24 C C24 JNO . . . B 2 23.594 13.455 31.557 1 28.3 ? C24 JNO 510 A 1 HETATM 25 C C25 JNO . . . B 2 22.432 12.767 32.057 1 26.9 ? C25 JNO 510 A 1 HETATM 26 N N26 JNO . . . B 2 21.317 13.235 32.532 1 25.87 ? N26 JNO 510 A 1 HETATM 27 C C27 JNO . . . B 2 20.576 12.127 32.845 1 26.8 ? C27 JNO 510 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 27 #