data_3CH4
#
_model_server_result.job_id            OWDOFt--AC_urWrV1gDMig 
_model_server_result.datetime_utc      '2024-11-06 01:46:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3ch4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":204}' 
#
_entry.id    3CH4 
#
_exptl.entry_id    3CH4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              118.174 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (4S)-2-METHYL-2,4-PENTANEDIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          111.01 
_cell.angle_gamma         90 
_cell.entry_id            3CH4 
_cell.length_a            93.14 
_cell.length_b            32.625 
_cell.length_c            61.786 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3CH4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
#
_chem_comp.formula           'C6 H14 O2' 
_chem_comp.formula_weight    118.174 
_chem_comp.id                MPD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (4S)-2-METHYL-2,4-PENTANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MPD sing 237 n n 
C1 H11 MPD sing 238 n n 
C1 H12 MPD sing 239 n n 
C1 H13 MPD sing 240 n n 
C2 O2 MPD sing 241 n n 
C2 CM MPD sing 242 n n 
C2 C3 MPD sing 243 n n 
O2 HO2 MPD sing 244 n n 
CM HM1 MPD sing 245 n n 
CM HM2 MPD sing 246 n n 
CM HM3 MPD sing 247 n n 
C3 C4 MPD sing 248 n n 
C3 H31 MPD sing 249 n n 
C3 H32 MPD sing 250 n n 
C4 O4 MPD sing 251 n n 
C4 C5 MPD sing 252 n n 
C4 H4 MPD sing 253 n n 
O4 HO4 MPD sing 254 n n 
C5 H51 MPD sing 255 n n 
C5 H52 MPD sing 256 n n 
C5 H53 MPD sing 257 n n 
#
_atom_sites.entry_id                     3CH4 
_atom_sites.fract_transf_matrix[1][1]    0.010737 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004124 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.030651 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017338 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SO4 B 1 201 201 SO4 SO4 . 
C 2 SO4 B 1 202 202 SO4 SO4 . 
D 3 MPD B 1 203 203 MPD MPD . 
E 3 MPD B 1 204 204 MPD MPD . 
F 4 HOH B 1 205 205 HOH HOH . 
F 4 HOH B 2 206 206 HOH HOH . 
F 4 HOH B 3 207 207 HOH HOH . 
F 4 HOH B 4 208 208 HOH HOH . 
F 4 HOH B 5 209 209 HOH HOH . 
F 4 HOH B 6 210 210 HOH HOH . 
F 4 HOH B 7 211 211 HOH HOH . 
F 4 HOH B 8 212 212 HOH HOH . 
F 4 HOH B 9 213 213 HOH HOH . 
F 4 HOH B 10 214 214 HOH HOH . 
F 4 HOH B 11 215 215 HOH HOH . 
F 4 HOH B 12 216 216 HOH HOH . 
F 4 HOH B 13 217 217 HOH HOH . 
F 4 HOH B 14 218 218 HOH HOH . 
F 4 HOH B 15 219 219 HOH HOH . 
F 4 HOH B 16 220 220 HOH HOH . 
F 4 HOH B 17 221 221 HOH HOH . 
F 4 HOH B 18 222 222 HOH HOH . 
F 4 HOH B 19 223 223 HOH HOH . 
F 4 HOH B 20 224 224 HOH HOH . 
F 4 HOH B 21 225 225 HOH HOH . 
F 4 HOH B 22 226 226 HOH HOH . 
F 4 HOH B 23 227 227 HOH HOH . 
F 4 HOH B 24 228 228 HOH HOH . 
F 4 HOH B 25 229 229 HOH HOH . 
F 4 HOH B 26 230 230 HOH HOH . 
F 4 HOH B 27 231 231 HOH HOH . 
F 4 HOH B 28 232 232 HOH HOH . 
F 4 HOH B 29 233 233 HOH HOH . 
F 4 HOH B 30 234 234 HOH HOH . 
F 4 HOH B 31 235 235 HOH HOH . 
F 4 HOH B 32 236 236 HOH HOH . 
F 4 HOH B 33 237 237 HOH HOH . 
F 4 HOH B 34 238 238 HOH HOH . 
F 4 HOH B 35 239 239 HOH HOH . 
F 4 HOH B 36 240 240 HOH HOH . 
F 4 HOH B 37 241 241 HOH HOH . 
F 4 HOH B 38 242 242 HOH HOH . 
F 4 HOH B 39 243 243 HOH HOH . 
F 4 HOH B 40 244 244 HOH HOH . 
F 4 HOH B 41 245 245 HOH HOH . 
F 4 HOH B 42 246 246 HOH HOH . 
F 4 HOH B 43 247 247 HOH HOH . 
F 4 HOH B 44 248 248 HOH HOH . 
F 4 HOH B 45 249 249 HOH HOH . 
F 4 HOH B 46 250 250 HOH HOH . 
F 4 HOH B 47 251 251 HOH HOH . 
F 4 HOH B 48 252 252 HOH HOH . 
F 4 HOH B 49 253 253 HOH HOH . 
F 4 HOH B 50 254 254 HOH HOH . 
F 4 HOH B 51 255 255 HOH HOH . 
F 4 HOH B 52 256 256 HOH HOH . 
F 4 HOH B 53 257 257 HOH HOH . 
F 4 HOH B 54 258 258 HOH HOH . 
F 4 HOH B 55 259 259 HOH HOH . 
F 4 HOH B 56 260 260 HOH HOH . 
F 4 HOH B 57 261 261 HOH HOH . 
F 4 HOH B 58 262 262 HOH HOH . 
F 4 HOH B 59 263 263 HOH HOH . 
F 4 HOH B 60 264 264 HOH HOH . 
F 4 HOH B 61 265 265 HOH HOH . 
F 4 HOH B 62 266 266 HOH HOH . 
F 4 HOH B 63 267 267 HOH HOH . 
F 4 HOH B 64 268 268 HOH HOH . 
F 4 HOH B 65 269 269 HOH HOH . 
F 4 HOH B 66 270 270 HOH HOH . 
F 4 HOH B 67 271 271 HOH HOH . 
F 4 HOH B 68 272 272 HOH HOH . 
F 4 HOH B 69 273 273 HOH HOH . 
F 4 HOH B 70 274 274 HOH HOH . 
F 4 HOH B 71 275 275 HOH HOH . 
F 4 HOH B 72 276 276 HOH HOH . 
F 4 HOH B 73 277 277 HOH HOH . 
F 4 HOH B 74 278 278 HOH HOH . 
F 4 HOH B 75 279 279 HOH HOH . 
F 4 HOH B 76 280 280 HOH HOH . 
F 4 HOH B 77 281 281 HOH HOH . 
F 4 HOH B 78 282 282 HOH HOH . 
F 4 HOH B 79 283 283 HOH HOH . 
F 4 HOH B 80 284 284 HOH HOH . 
F 4 HOH B 81 285 285 HOH HOH . 
F 4 HOH B 82 286 286 HOH HOH . 
F 4 HOH B 83 287 287 HOH HOH . 
F 4 HOH B 84 288 288 HOH HOH . 
F 4 HOH B 85 289 289 HOH HOH . 
F 4 HOH B 86 290 290 HOH HOH . 
F 4 HOH B 87 291 291 HOH HOH . 
F 4 HOH B 88 292 292 HOH HOH . 
F 4 HOH B 89 293 293 HOH HOH . 
F 4 HOH B 90 294 294 HOH HOH . 
F 4 HOH B 91 295 295 HOH HOH . 
F 4 HOH B 92 296 296 HOH HOH . 
F 4 HOH B 93 297 297 HOH HOH . 
F 4 HOH B 94 298 298 HOH HOH . 
F 4 HOH B 95 299 299 HOH HOH . 
F 4 HOH B 96 300 300 HOH HOH . 
F 4 HOH B 97 301 301 HOH HOH . 
F 4 HOH B 98 302 302 HOH HOH . 
F 4 HOH B 99 303 303 HOH HOH . 
F 4 HOH B 100 304 304 HOH HOH . 
F 4 HOH B 101 305 305 HOH HOH . 
F 4 HOH B 102 306 306 HOH HOH . 
F 4 HOH B 103 307 307 HOH HOH . 
F 4 HOH B 104 308 308 HOH HOH . 
F 4 HOH B 105 309 309 HOH HOH . 
F 4 HOH B 106 310 310 HOH HOH . 
F 4 HOH B 107 311 311 HOH HOH . 
F 4 HOH B 108 312 312 HOH HOH . 
F 4 HOH B 109 313 313 HOH HOH . 
F 4 HOH B 110 314 314 HOH HOH . 
F 4 HOH B 111 315 315 HOH HOH . 
F 4 HOH B 112 316 316 HOH HOH . 
F 4 HOH B 113 317 317 HOH HOH . 
F 4 HOH B 114 318 318 HOH HOH . 
F 4 HOH B 115 319 319 HOH HOH . 
F 4 HOH B 116 320 320 HOH HOH . 
F 4 HOH B 117 321 321 HOH HOH . 
F 4 HOH B 118 322 322 HOH HOH . 
F 4 HOH B 119 323 323 HOH HOH . 
F 4 HOH B 120 324 324 HOH HOH . 
F 4 HOH B 121 325 325 HOH HOH . 
F 4 HOH B 122 326 326 HOH HOH . 
F 4 HOH B 123 327 327 HOH HOH . 
F 4 HOH B 124 328 328 HOH HOH . 
F 4 HOH B 125 329 329 HOH HOH . 
F 4 HOH B 126 330 330 HOH HOH . 
F 4 HOH B 127 331 331 HOH HOH . 
F 4 HOH B 128 332 332 HOH HOH . 
F 4 HOH B 129 333 334 HOH HOH . 
F 4 HOH B 130 334 335 HOH HOH . 
F 4 HOH B 131 335 336 HOH HOH . 
F 4 HOH B 132 336 337 HOH HOH . 
F 4 HOH B 133 337 338 HOH HOH . 
F 4 HOH B 134 338 339 HOH HOH . 
F 4 HOH B 135 339 340 HOH HOH . 
F 4 HOH B 136 340 341 HOH HOH . 
F 4 HOH B 137 341 342 HOH HOH . 
F 4 HOH B 138 342 343 HOH HOH . 
F 4 HOH B 139 343 344 HOH HOH . 
F 4 HOH B 140 344 345 HOH HOH . 
F 4 HOH B 141 345 346 HOH HOH . 
F 4 HOH B 142 346 347 HOH HOH . 
F 4 HOH B 143 347 348 HOH HOH . 
F 4 HOH B 144 348 349 HOH HOH . 
F 4 HOH B 145 349 350 HOH HOH . 
F 4 HOH B 146 350 351 HOH HOH . 
F 4 HOH B 147 351 352 HOH HOH . 
F 4 HOH B 148 352 353 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MPD . . . E 3 22.611 -1.39 27.712 1 33.59 ? C1 MPD 204 B 1 
HETATM 2 C C2 MPD . . . E 3 23.595 -2.529 28.018 1 34.7 ? C2 MPD 204 B 1 
HETATM 3 O O2 MPD . . . E 3 23.668 -2.73 29.445 1 33.24 ? O2 MPD 204 B 1 
HETATM 4 C CM MPD . . . E 3 23.112 -3.795 27.386 1 32.19 ? CM MPD 204 B 1 
HETATM 5 C C3 MPD . . . E 3 24.981 -1.992 27.583 1 34.45 ? C3 MPD 204 B 1 
HETATM 6 C C4 MPD . . . E 3 26.269 -2.877 27.762 1 36.03 ? C4 MPD 204 B 1 
HETATM 7 O O4 MPD . . . E 3 25.93 -4.063 28.537 1 37.64 ? O4 MPD 204 B 1 
HETATM 8 C C5 MPD . . . E 3 26.752 -3.421 26.365 1 35.82 ? C5 MPD 204 B 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           281 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           8 
#