data_3CH5 # _model_server_result.job_id SLE6Vkbu0VPRLLjH8c_Jug _model_server_result.datetime_utc '2024-11-05 01:25:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ch5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":221}' # _entry.id 3CH5 # _exptl.entry_id 3CH5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3CH5 _cell.length_a 69.7 _cell.length_b 75.35 _cell.length_c 123.05 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3CH5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA octameric 8 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H 1 1,2,3,4 A,B,C,D,E,F,G,H 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_554 -x,y,-z-1 -1 0 0 0 1 0 0 0 -1 0 0 -123.05 4 'crystal symmetry operation' 4_554 x,-y,-z-1 1 0 0 0 -1 0 0 0 -1 0 0 -123.05 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 24 A THR 24 1_555 C MG MG . A MG 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? metalc ? metalc2 E O1B GDP . A GDP 220 1_555 C MG MG . A MG 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? metalc ? metalc3 C MG MG . A MG 221 1_555 G O HOH . A HOH 236 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? metalc ? metalc4 C MG MG . A MG 221 1_555 G O HOH . A HOH 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? metalc ? metalc5 C MG MG . A MG 221 1_555 G O HOH . A HOH 269 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? metalc ? metalc6 C MG MG . A MG 221 1_555 G O HOH . A HOH 270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.979 ? metalc ? metalc7 B SG CYS 25 B CYS 727 1_555 F ZN ZN . B ZN 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc8 B SG CYS 28 B CYS 730 1_555 F ZN ZN . B ZN 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc9 B SG CYS 39 B CYS 741 1_555 F ZN ZN . B ZN 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? metalc ? metalc10 B SG CYS 42 B CYS 744 1_555 F ZN ZN . B ZN 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3CH5 _atom_sites.fract_transf_matrix[1][1] 0.014347 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013271 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008127 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG A 1 221 221 MG MG . D 4 SO4 A 1 222 222 SO4 SO4 . E 5 GDP A 1 220 220 GDP GDP . F 6 ZN B 1 800 800 ZN ZN . G 7 HOH A 1 223 223 HOH HOH . G 7 HOH A 2 224 224 HOH HOH . G 7 HOH A 3 225 225 HOH HOH . G 7 HOH A 4 226 226 HOH HOH . G 7 HOH A 5 227 227 HOH HOH . G 7 HOH A 6 228 228 HOH HOH . G 7 HOH A 7 229 229 HOH HOH . G 7 HOH A 8 230 230 HOH HOH . G 7 HOH A 9 231 231 HOH HOH . G 7 HOH A 10 232 232 HOH HOH . G 7 HOH A 11 233 233 HOH HOH . G 7 HOH A 12 234 234 HOH HOH . G 7 HOH A 13 235 235 HOH HOH . G 7 HOH A 14 236 236 HOH HOH . G 7 HOH A 15 237 237 HOH HOH . G 7 HOH A 16 238 238 HOH HOH . G 7 HOH A 17 239 239 HOH HOH . G 7 HOH A 18 240 240 HOH HOH . G 7 HOH A 19 241 241 HOH HOH . G 7 HOH A 20 242 242 HOH HOH . G 7 HOH A 21 243 243 HOH HOH . G 7 HOH A 22 244 244 HOH HOH . G 7 HOH A 23 245 245 HOH HOH . G 7 HOH A 24 246 246 HOH HOH . G 7 HOH A 25 247 247 HOH HOH . G 7 HOH A 26 248 248 HOH HOH . G 7 HOH A 27 249 249 HOH HOH . G 7 HOH A 28 250 250 HOH HOH . G 7 HOH A 29 251 251 HOH HOH . G 7 HOH A 30 252 252 HOH HOH . G 7 HOH A 31 253 253 HOH HOH . G 7 HOH A 32 254 254 HOH HOH . G 7 HOH A 33 255 255 HOH HOH . G 7 HOH A 34 256 256 HOH HOH . G 7 HOH A 35 257 257 HOH HOH . G 7 HOH A 36 258 258 HOH HOH . G 7 HOH A 37 259 259 HOH HOH . G 7 HOH A 38 260 260 HOH HOH . G 7 HOH A 39 261 261 HOH HOH . G 7 HOH A 40 262 262 HOH HOH . G 7 HOH A 41 263 263 HOH HOH . G 7 HOH A 42 264 264 HOH HOH . G 7 HOH A 43 265 265 HOH HOH . G 7 HOH A 44 266 266 HOH HOH . G 7 HOH A 45 267 267 HOH HOH . G 7 HOH A 46 268 268 HOH HOH . G 7 HOH A 47 269 269 HOH HOH . G 7 HOH A 48 270 270 HOH HOH . G 7 HOH A 49 271 271 HOH HOH . G 7 HOH A 50 272 272 HOH HOH . G 7 HOH A 51 273 273 HOH HOH . G 7 HOH A 52 274 274 HOH HOH . G 7 HOH A 53 275 275 HOH HOH . G 7 HOH A 54 276 276 HOH HOH . G 7 HOH A 55 277 277 HOH HOH . G 7 HOH A 56 278 278 HOH HOH . G 7 HOH A 57 279 279 HOH HOH . G 7 HOH A 58 280 280 HOH HOH . G 7 HOH A 59 281 281 HOH HOH . G 7 HOH A 60 282 282 HOH HOH . G 7 HOH A 61 283 283 HOH HOH . G 7 HOH A 62 284 284 HOH HOH . G 7 HOH A 63 285 285 HOH HOH . G 7 HOH A 64 286 286 HOH HOH . G 7 HOH A 65 287 287 HOH HOH . G 7 HOH A 66 288 288 HOH HOH . G 7 HOH A 67 289 289 HOH HOH . H 7 HOH B 1 801 801 HOH HOH . H 7 HOH B 2 802 802 HOH HOH . H 7 HOH B 3 803 803 HOH HOH . H 7 HOH B 4 804 804 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 20.205 _atom_site.Cartn_y -7.805 _atom_site.Cartn_z -40.922 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 22.72 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 221 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 220 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #