data_3CJC # _model_server_result.job_id iTtFXIU8sPZIx_Oe0iOHEA _model_server_result.datetime_utc '2025-01-11 13:08:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3cjc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":403}' # _entry.id 3CJC # _exptl.entry_id 3CJC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3CJC _cell.length_a 89.303 _cell.length_b 108.566 _cell.length_c 133.761 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3CJC _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 4 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D NAG 1 B 1 NAG D 270 NAG 4 n D NAG 2 B 2 NAG D 271 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 101 D CYS 101 1_555 B SG CYS 104 D CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf2 B SG CYS 173 D CYS 173 1_555 B SG CYS 209 D CYS 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? covale ? covale1 B ND2 ASN 18 D ASN 18 1_555 D C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.467 ? covale ? covale2 D O4 NAG . B NAG 1 1_555 D C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? metalc ? metalc1 E CA CA . A CA 401 1_555 G O1B ATP . A ATP 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? metalc ? metalc2 E CA CA . A CA 401 1_555 G O2G ATP . A ATP 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.674 ? metalc ? metalc3 C O GLY 41 G GLY 41 1_555 M CA CA . G CA 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc4 C OD2 ASP 42 G ASP 42 1_555 M CA CA . G CA 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.768 ? metalc ? metalc5 C OE1 GLU 73 G GLU 73 1_555 M CA CA . G CA 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.763 ? metalc ? metalc6 C O VAL 121 G VAL 121 1_555 M CA CA . G CA 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc7 M CA CA . G CA 127 1_555 N O HOH . G HOH 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc8 M CA CA . G CA 127 1_555 N O HOH . G HOH 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.694 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 3CJC _atom_sites.fract_transf_matrix[1][1] 0.011198 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009211 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007476 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 CA A 1 401 401 CA CA . F 6 SO4 A 1 402 5 SO4 SO4 . G 7 ATP A 1 403 402 ATP ATP . H 6 SO4 D 1 272 1 SO4 SO4 . I 6 SO4 D 1 273 2 SO4 SO4 . J 6 SO4 D 1 274 3 SO4 SO4 . K 6 SO4 D 1 275 6 SO4 SO4 . L 6 SO4 G 1 126 4 SO4 SO4 . M 5 CA G 1 127 7 CA CA . N 8 HOH G 1 128 8 HOH HOH . N 8 HOH G 2 129 9 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . G 7 -6.557 36.652 -3.442 1 18.98 ? PG ATP 403 A 1 HETATM 2 O O1G ATP . . . G 7 -6.244 36.206 -2.038 1 19.23 ? O1G ATP 403 A 1 HETATM 3 O O2G ATP . . . G 7 -5.984 37.996 -3.815 1 18.96 ? O2G ATP 403 A 1 HETATM 4 O O3G ATP . . . G 7 -8.005 36.489 -3.831 1 18.65 ? O3G ATP 403 A 1 HETATM 5 P PB ATP . . . G 7 -4.432 35.904 -5.495 1 20.71 ? PB ATP 403 A 1 HETATM 6 O O1B ATP . . . G 7 -3.739 37.137 -4.969 1 20.93 ? O1B ATP 403 A 1 HETATM 7 O O2B ATP . . . G 7 -3.593 34.677 -5.748 1 21.01 ? O2B ATP 403 A 1 HETATM 8 O O3B ATP . . . G 7 -5.724 35.465 -4.41 1 19.8 ? O3B ATP 403 A 1 HETATM 9 P PA ATP . . . G 7 -4.36 36.934 -8.124 1 23.47 ? PA ATP 403 A 1 HETATM 10 O O1A ATP . . . G 7 -4.592 38.424 -8.069 1 23.72 ? O1A ATP 403 A 1 HETATM 11 O O2A ATP . . . G 7 -2.948 36.402 -8.156 1 23.58 ? O2A ATP 403 A 1 HETATM 12 O O3A ATP . . . G 7 -5.146 36.257 -6.893 1 22.24 ? O3A ATP 403 A 1 HETATM 13 O O5' ATP . . . G 7 -5.16 36.367 -9.4 1 24.31 ? O5' ATP 403 A 1 HETATM 14 C C5' ATP . . . G 7 -5.303 34.971 -9.654 1 25.43 ? C5' ATP 403 A 1 HETATM 15 C C4' ATP . . . G 7 -6.732 34.683 -10.102 1 26.23 ? C4' ATP 403 A 1 HETATM 16 O O4' ATP . . . G 7 -7.168 35.694 -11.015 1 26.59 ? O4' ATP 403 A 1 HETATM 17 C C3' ATP . . . G 7 -6.86 33.341 -10.811 1 26.99 ? C3' ATP 403 A 1 HETATM 18 O O3' ATP . . . G 7 -7.82 32.516 -10.149 1 27.72 ? O3' ATP 403 A 1 HETATM 19 C C2' ATP . . . G 7 -7.298 33.65 -12.231 1 27.16 ? C2' ATP 403 A 1 HETATM 20 O O2' ATP . . . G 7 -8.435 32.884 -12.648 1 27.65 ? O2' ATP 403 A 1 HETATM 21 C C1' ATP . . . G 7 -7.629 35.132 -12.245 1 26.89 ? C1' ATP 403 A 1 HETATM 22 N N9 ATP . . . G 7 -6.96 35.76 -13.407 1 26.93 ? N9 ATP 403 A 1 HETATM 23 C C8 ATP . . . G 7 -5.63 35.927 -13.569 1 26.95 ? C8 ATP 403 A 1 HETATM 24 N N7 ATP . . . G 7 -5.362 36.528 -14.756 1 26.85 ? N7 ATP 403 A 1 HETATM 25 C C5 ATP . . . G 7 -6.539 36.748 -15.371 1 27.13 ? C5 ATP 403 A 1 HETATM 26 C C6 ATP . . . G 7 -6.984 37.346 -16.654 1 27.41 ? C6 ATP 403 A 1 HETATM 27 N N6 ATP . . . G 7 -6.089 37.845 -17.541 1 27.81 ? N6 ATP 403 A 1 HETATM 28 N N1 ATP . . . G 7 -8.313 37.381 -16.91 1 27.14 ? N1 ATP 403 A 1 HETATM 29 C C2 ATP . . . G 7 -9.222 36.892 -16.042 1 27.02 ? C2 ATP 403 A 1 HETATM 30 N N3 ATP . . . G 7 -8.889 36.335 -14.859 1 26.89 ? N3 ATP 403 A 1 HETATM 31 C C4 ATP . . . G 7 -7.59 36.238 -14.476 1 26.98 ? C4 ATP 403 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 31 #