data_3CJE
#
_model_server_result.job_id            UcgWpsc0W0aipLck-T83Yg 
_model_server_result.datetime_utc      '2025-03-13 18:05:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3cje 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":168}' 
#
_entry.id    3CJE 
#
_exptl.entry_id    3CJE 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3CJE 
_cell.length_a            81.886 
_cell.length_b            81.886 
_cell.length_c            70.633 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3CJE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 5_675 x-y+1,-y+2,-z+1/3 1 0 0 0 -1 0 0 0 -1 0 141.830712 23.544333 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C LYS 26 A LYS 25 1_555 A N MSE 27 A MSE 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale2 A C MSE 27 A MSE 26 1_555 A N ARG 28 A ARG 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale3 A C ALA 34 A ALA 33 1_555 A N MSE 35 A MSE 34 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.331 ? 
covale ? covale4 A C ALA 34 A ALA 33 1_555 A N MSE 35 A MSE 34 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.327 ? 
covale ? covale5 A C MSE 35 A MSE 34 1_555 A N VAL 36 A VAL 35 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale6 A C MSE 35 A MSE 34 1_555 A N VAL 36 A VAL 35 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale7 A C VAL 74 A VAL 73 1_555 A N MSE 75 A MSE 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale8 A C MSE 75 A MSE 74 1_555 A N THR 76 A THR 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     3CJE 
_atom_sites.fract_transf_matrix[1][1]    0.012212 
_atom_sites.fract_transf_matrix[1][2]    0.007051 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014101 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014158 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PO4 A 1 167 1 PO4 PO4 . 
C 3 GOL A 1 168 2 GOL GOL . 
D 3 GOL A 1 169 3 GOL GOL . 
E 3 GOL A 1 170 4 GOL GOL . 
F 3 GOL A 1 171 5 GOL GOL . 
G 3 GOL A 1 172 6 GOL GOL . 
H 3 GOL A 1 173 7 GOL GOL . 
I 3 GOL A 1 174 8 GOL GOL . 
J 3 GOL A 1 175 9 GOL GOL . 
K 4 HOH A 1 176 10 HOH HOH . 
K 4 HOH A 2 177 11 HOH HOH . 
K 4 HOH A 3 178 12 HOH HOH . 
K 4 HOH A 4 179 13 HOH HOH . 
K 4 HOH A 5 180 14 HOH HOH . 
K 4 HOH A 6 181 15 HOH HOH . 
K 4 HOH A 7 182 16 HOH HOH . 
K 4 HOH A 8 183 17 HOH HOH . 
K 4 HOH A 9 184 18 HOH HOH . 
K 4 HOH A 10 185 19 HOH HOH . 
K 4 HOH A 11 186 20 HOH HOH . 
K 4 HOH A 12 187 21 HOH HOH . 
K 4 HOH A 13 188 22 HOH HOH . 
K 4 HOH A 14 189 23 HOH HOH . 
K 4 HOH A 15 190 24 HOH HOH . 
K 4 HOH A 16 191 25 HOH HOH . 
K 4 HOH A 17 192 26 HOH HOH . 
K 4 HOH A 18 193 27 HOH HOH . 
K 4 HOH A 19 194 28 HOH HOH . 
K 4 HOH A 20 195 29 HOH HOH . 
K 4 HOH A 21 196 30 HOH HOH . 
K 4 HOH A 22 197 31 HOH HOH . 
K 4 HOH A 23 198 32 HOH HOH . 
K 4 HOH A 24 199 33 HOH HOH . 
K 4 HOH A 25 200 34 HOH HOH . 
K 4 HOH A 26 201 35 HOH HOH . 
K 4 HOH A 27 202 36 HOH HOH . 
K 4 HOH A 28 203 37 HOH HOH . 
K 4 HOH A 29 204 38 HOH HOH . 
K 4 HOH A 30 205 39 HOH HOH . 
K 4 HOH A 31 206 40 HOH HOH . 
K 4 HOH A 32 207 41 HOH HOH . 
K 4 HOH A 33 208 42 HOH HOH . 
K 4 HOH A 34 209 43 HOH HOH . 
K 4 HOH A 35 210 44 HOH HOH . 
K 4 HOH A 36 211 45 HOH HOH . 
K 4 HOH A 37 212 46 HOH HOH . 
K 4 HOH A 38 213 47 HOH HOH . 
K 4 HOH A 39 214 48 HOH HOH . 
K 4 HOH A 40 215 49 HOH HOH . 
K 4 HOH A 41 216 50 HOH HOH . 
K 4 HOH A 42 217 51 HOH HOH . 
K 4 HOH A 43 218 52 HOH HOH . 
K 4 HOH A 44 219 53 HOH HOH . 
K 4 HOH A 45 220 54 HOH HOH . 
K 4 HOH A 46 221 55 HOH HOH . 
K 4 HOH A 47 222 56 HOH HOH . 
K 4 HOH A 48 223 57 HOH HOH . 
K 4 HOH A 49 224 58 HOH HOH . 
K 4 HOH A 50 225 59 HOH HOH . 
K 4 HOH A 51 226 60 HOH HOH . 
K 4 HOH A 52 227 61 HOH HOH . 
K 4 HOH A 53 228 62 HOH HOH . 
K 4 HOH A 54 229 63 HOH HOH . 
K 4 HOH A 55 230 64 HOH HOH . 
K 4 HOH A 56 231 65 HOH HOH . 
K 4 HOH A 57 232 66 HOH HOH . 
K 4 HOH A 58 233 67 HOH HOH . 
K 4 HOH A 59 234 68 HOH HOH . 
K 4 HOH A 60 235 69 HOH HOH . 
K 4 HOH A 61 236 70 HOH HOH . 
K 4 HOH A 62 237 71 HOH HOH . 
K 4 HOH A 63 238 72 HOH HOH . 
K 4 HOH A 64 239 73 HOH HOH . 
K 4 HOH A 65 240 74 HOH HOH . 
K 4 HOH A 66 241 75 HOH HOH . 
K 4 HOH A 67 242 76 HOH HOH . 
K 4 HOH A 68 243 77 HOH HOH . 
K 4 HOH A 69 244 78 HOH HOH . 
K 4 HOH A 70 245 79 HOH HOH . 
K 4 HOH A 71 246 80 HOH HOH . 
K 4 HOH A 72 247 81 HOH HOH . 
K 4 HOH A 73 248 82 HOH HOH . 
K 4 HOH A 74 249 83 HOH HOH . 
K 4 HOH A 75 250 84 HOH HOH . 
K 4 HOH A 76 251 85 HOH HOH . 
K 4 HOH A 77 252 86 HOH HOH . 
K 4 HOH A 78 253 87 HOH HOH . 
K 4 HOH A 79 254 88 HOH HOH . 
K 4 HOH A 80 255 89 HOH HOH . 
K 4 HOH A 81 256 90 HOH HOH . 
K 4 HOH A 82 257 91 HOH HOH . 
K 4 HOH A 83 258 92 HOH HOH . 
K 4 HOH A 84 259 93 HOH HOH . 
K 4 HOH A 85 260 94 HOH HOH . 
K 4 HOH A 86 261 95 HOH HOH . 
K 4 HOH A 87 262 96 HOH HOH . 
K 4 HOH A 88 263 97 HOH HOH . 
K 4 HOH A 89 264 98 HOH HOH . 
K 4 HOH A 90 265 99 HOH HOH . 
K 4 HOH A 91 266 100 HOH HOH . 
K 4 HOH A 92 267 101 HOH HOH . 
K 4 HOH A 93 268 102 HOH HOH . 
K 4 HOH A 94 269 103 HOH HOH . 
K 4 HOH A 95 270 104 HOH HOH . 
K 4 HOH A 96 271 105 HOH HOH . 
K 4 HOH A 97 272 106 HOH HOH . 
K 4 HOH A 98 273 107 HOH HOH . 
K 4 HOH A 99 274 108 HOH HOH . 
K 4 HOH A 100 275 109 HOH HOH . 
K 4 HOH A 101 276 110 HOH HOH . 
K 4 HOH A 102 277 111 HOH HOH . 
K 4 HOH A 103 278 112 HOH HOH . 
K 4 HOH A 104 279 113 HOH HOH . 
K 4 HOH A 105 280 114 HOH HOH . 
K 4 HOH A 106 281 115 HOH HOH . 
K 4 HOH A 107 282 116 HOH HOH . 
K 4 HOH A 108 283 117 HOH HOH . 
K 4 HOH A 109 284 118 HOH HOH . 
K 4 HOH A 110 285 119 HOH HOH . 
K 4 HOH A 111 286 120 HOH HOH . 
K 4 HOH A 112 287 121 HOH HOH . 
K 4 HOH A 113 288 122 HOH HOH . 
K 4 HOH A 114 289 123 HOH HOH . 
K 4 HOH A 115 290 124 HOH HOH . 
K 4 HOH A 116 291 125 HOH HOH . 
K 4 HOH A 117 292 126 HOH HOH . 
K 4 HOH A 118 293 127 HOH HOH . 
K 4 HOH A 119 294 128 HOH HOH . 
K 4 HOH A 120 295 129 HOH HOH . 
K 4 HOH A 121 296 130 HOH HOH . 
K 4 HOH A 122 297 131 HOH HOH . 
K 4 HOH A 123 298 132 HOH HOH . 
K 4 HOH A 124 299 133 HOH HOH . 
K 4 HOH A 125 300 134 HOH HOH . 
K 4 HOH A 126 301 135 HOH HOH . 
K 4 HOH A 127 302 136 HOH HOH . 
K 4 HOH A 128 303 137 HOH HOH . 
K 4 HOH A 129 304 138 HOH HOH . 
K 4 HOH A 130 305 139 HOH HOH . 
K 4 HOH A 131 306 140 HOH HOH . 
K 4 HOH A 132 307 141 HOH HOH . 
K 4 HOH A 133 308 142 HOH HOH . 
K 4 HOH A 134 309 143 HOH HOH . 
K 4 HOH A 135 310 144 HOH HOH . 
K 4 HOH A 136 311 145 HOH HOH . 
K 4 HOH A 137 312 146 HOH HOH . 
K 4 HOH A 138 313 147 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . C 3 1.922 41.763 12.985 1 50.13 ? C1 GOL 168 A 1 
HETATM 2 O O1 GOL . . . C 3 2.636 42.938 13.263 1 38.51 ? O1 GOL 168 A 1 
HETATM 3 C C2 GOL . . . C 3 1.466 41.872 11.557 1 43.54 ? C2 GOL 168 A 1 
HETATM 4 O O2 GOL . . . C 3 2.617 41.956 10.739 1 51.98 ? O2 GOL 168 A 1 
HETATM 5 C C3 GOL . . . C 3 0.564 40.692 11.277 1 55.15 ? C3 GOL 168 A 1 
HETATM 6 O O3 GOL . . . C 3 0.935 40.129 10.046 1 62.95 ? O3 GOL 168 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           316 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           6 
#