data_3CJF # _model_server_result.job_id l_xDxWTzv06-bg57RrQLVQ _model_server_result.datetime_utc '2024-10-18 06:24:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3cjf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1167}' # _entry.id 3CJF # _exptl.entry_id 3CJF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 406.438 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N~4~-(3-methyl-1H-indazol-6-yl)-N~2~-(3,4,5-trimethoxyphenyl)pyrimidine-2,4-diamine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3CJF _cell.length_a 37.435 _cell.length_b 94.742 _cell.length_c 96.797 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3CJF _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C THR 56 A THR 859 1_555 A N CSO 57 A CSO 860 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.333 ? covale ? covale2 A C THR 56 A THR 859 1_555 A N CSO 57 A CSO 860 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.335 ? covale ? covale3 A C CSO 57 A CSO 860 1_555 A N ARG 58 A ARG 861 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.333 ? covale ? covale4 A C CSO 57 A CSO 860 1_555 A N ARG 58 A ARG 861 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.337 ? covale ? covale5 A C ILE 147 A ILE 1004 1_555 A N CSO 148 A CSO 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale6 A C CSO 148 A CSO 1005 1_555 A N TYR 149 A TYR 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale7 A C LYS 164 A LYS 1021 1_555 A N CSO 165 A CSO 1022 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale8 A C CSO 165 A CSO 1022 1_555 A N ILE 166 A ILE 1023 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale9 A C ILE 185 A ILE 1042 1_555 A N CSO 186 A CSO 1043 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale10 A C CSO 186 A CSO 1043 1_555 A N ASP 187 A ASP 1044 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale11 A C PHE 256 A PHE 1113 1_555 A N CSO 257 A CSO 1114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale12 A C CSO 257 A CSO 1114 1_555 A N ARG 258 A ARG 1115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? # _chem_comp.formula 'C21 H22 N6 O3' _chem_comp.formula_weight 406.438 _chem_comp.id SAV _chem_comp.mon_nstd_flag . _chem_comp.name N~4~-(3-methyl-1H-indazol-6-yl)-N~2~-(3,4,5-trimethoxyphenyl)pyrimidine-2,4-diamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C4 SAV sing 291 n n N1 C5 SAV sing 292 n n N3 C8 SAV sing 293 n n N3 C9 SAV sing 294 n n C4 C17 SAV doub 295 n y C4 C3 SAV sing 296 n y C5 N2 SAV doub 297 n y C5 N6 SAV sing 298 n y C6 C7 SAV doub 299 n y C6 N2 SAV sing 300 n y C7 C8 SAV sing 301 n y C8 N6 SAV doub 302 n y C10 C9 SAV doub 303 n y C10 C11 SAV sing 304 n y C13 C12 SAV sing 305 n y C13 C14 SAV sing 306 n n C13 N4 SAV doub 307 n y C15 C12 SAV sing 308 n y C15 N5 SAV sing 309 n y C15 C16 SAV doub 310 n y C17 C18 SAV sing 311 n y C20 C2 SAV sing 312 n y C20 C18 SAV doub 313 n y C20 O3 SAV sing 314 n n C21 O3 SAV sing 315 n n C1 O1 SAV sing 316 n n O1 C2 SAV sing 317 n n C2 C3 SAV doub 318 n y C9 C16 SAV sing 319 n y C11 C12 SAV doub 320 n y N4 N5 SAV sing 321 n y C18 O2 SAV sing 322 n n O2 C19 SAV sing 323 n n N1 HN1 SAV sing 324 n n N3 HN3 SAV sing 325 n n C6 H6 SAV sing 326 n n C7 H7 SAV sing 327 n n C10 H10 SAV sing 328 n n C17 H17 SAV sing 329 n n C21 H21 SAV sing 330 n n C21 H21A SAV sing 331 n n C21 H21B SAV sing 332 n n C1 H1 SAV sing 333 n n C1 H1A SAV sing 334 n n C1 H1B SAV sing 335 n n C3 H3 SAV sing 336 n n C11 H11 SAV sing 337 n n C14 H14 SAV sing 338 n n C14 H14A SAV sing 339 n n C14 H14B SAV sing 340 n n N5 HN5 SAV sing 341 n n C16 H16 SAV sing 342 n n C19 H19 SAV sing 343 n n C19 H19A SAV sing 344 n n C19 H19B SAV sing 345 n n # _atom_sites.entry_id 3CJF _atom_sites.fract_transf_matrix[1][1] 0.026713 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010555 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010331 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 1 1 SO4 SO4 . C 2 SO4 A 1 2 2 SO4 SO4 . D 2 SO4 A 1 3 3 SO4 SO4 . E 2 SO4 A 1 4 4 SO4 SO4 . F 3 SAV A 1 1167 1167 SAV SAV . G 4 HOH A 1 1168 1168 HOH HOH . G 4 HOH A 2 1169 1169 HOH HOH . G 4 HOH A 3 1170 1170 HOH HOH . G 4 HOH A 4 1171 1171 HOH HOH . G 4 HOH A 5 1172 1172 HOH HOH . G 4 HOH A 6 1173 1173 HOH HOH . G 4 HOH A 7 1174 1174 HOH HOH . G 4 HOH A 8 1175 1175 HOH HOH . G 4 HOH A 9 1176 1176 HOH HOH . G 4 HOH A 10 1177 1177 HOH HOH . G 4 HOH A 11 1178 1178 HOH HOH . G 4 HOH A 12 1179 1179 HOH HOH . G 4 HOH A 13 1180 1180 HOH HOH . G 4 HOH A 14 1181 1181 HOH HOH . G 4 HOH A 15 1182 1182 HOH HOH . G 4 HOH A 16 1183 1183 HOH HOH . G 4 HOH A 17 1184 1184 HOH HOH . G 4 HOH A 18 1185 1185 HOH HOH . G 4 HOH A 19 1186 1186 HOH HOH . G 4 HOH A 20 1187 1187 HOH HOH . G 4 HOH A 21 1188 1188 HOH HOH . G 4 HOH A 22 1189 1189 HOH HOH . G 4 HOH A 23 1190 1190 HOH HOH . G 4 HOH A 24 1191 1191 HOH HOH . G 4 HOH A 25 1192 1192 HOH HOH . G 4 HOH A 26 1193 1193 HOH HOH . G 4 HOH A 27 1194 1194 HOH HOH . G 4 HOH A 28 1195 1195 HOH HOH . G 4 HOH A 29 1196 1196 HOH HOH . G 4 HOH A 30 1197 1197 HOH HOH . G 4 HOH A 31 1198 1198 HOH HOH . G 4 HOH A 32 1199 1199 HOH HOH . G 4 HOH A 33 1200 1200 HOH HOH . G 4 HOH A 34 1201 1201 HOH HOH . G 4 HOH A 35 1202 1202 HOH HOH . G 4 HOH A 36 1203 1203 HOH HOH . G 4 HOH A 37 1204 1204 HOH HOH . G 4 HOH A 38 1205 1205 HOH HOH . G 4 HOH A 39 1206 1206 HOH HOH . G 4 HOH A 40 1207 1207 HOH HOH . G 4 HOH A 41 1208 1208 HOH HOH . G 4 HOH A 42 1209 1209 HOH HOH . G 4 HOH A 43 1210 1210 HOH HOH . G 4 HOH A 44 1211 1211 HOH HOH . G 4 HOH A 45 1212 1212 HOH HOH . G 4 HOH A 46 1213 1213 HOH HOH . G 4 HOH A 47 1214 1214 HOH HOH . G 4 HOH A 48 1215 1215 HOH HOH . G 4 HOH A 49 1216 1216 HOH HOH . G 4 HOH A 50 1217 1217 HOH HOH . G 4 HOH A 51 1218 1218 HOH HOH . G 4 HOH A 52 1219 1219 HOH HOH . G 4 HOH A 53 1220 1220 HOH HOH . G 4 HOH A 54 1221 1221 HOH HOH . G 4 HOH A 55 1222 1222 HOH HOH . G 4 HOH A 56 1223 1223 HOH HOH . G 4 HOH A 57 1224 1224 HOH HOH . G 4 HOH A 58 1225 1225 HOH HOH . G 4 HOH A 59 1226 1226 HOH HOH . G 4 HOH A 60 1227 1227 HOH HOH . G 4 HOH A 61 1228 1228 HOH HOH . G 4 HOH A 62 1229 1229 HOH HOH . G 4 HOH A 63 1230 1230 HOH HOH . G 4 HOH A 64 1231 1231 HOH HOH . G 4 HOH A 65 1232 1232 HOH HOH . G 4 HOH A 66 1233 1233 HOH HOH . G 4 HOH A 67 1234 1234 HOH HOH . G 4 HOH A 68 1235 1235 HOH HOH . G 4 HOH A 69 1236 1236 HOH HOH . G 4 HOH A 70 1237 1237 HOH HOH . G 4 HOH A 71 1238 1238 HOH HOH . G 4 HOH A 72 1239 1239 HOH HOH . G 4 HOH A 73 1240 1240 HOH HOH . G 4 HOH A 74 1241 1241 HOH HOH . G 4 HOH A 75 1242 1242 HOH HOH . G 4 HOH A 76 1243 1243 HOH HOH . G 4 HOH A 77 1244 1244 HOH HOH . G 4 HOH A 78 1245 1245 HOH HOH . G 4 HOH A 79 1246 1246 HOH HOH . G 4 HOH A 80 1247 1247 HOH HOH . G 4 HOH A 81 1248 1248 HOH HOH . G 4 HOH A 82 1249 1249 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 SAV . . . F 3 15.379 18.848 17.985 1 72.58 ? N1 SAV 1167 A 1 HETATM 2 N N3 SAV . . . F 3 17.987 15.176 16.369 1 76.33 ? N3 SAV 1167 A 1 HETATM 3 C C4 SAV . . . F 3 16.398 19.397 18.797 1 73.48 ? C4 SAV 1167 A 1 HETATM 4 C C5 SAV . . . F 3 15.522 17.699 17.186 1 69.48 ? C5 SAV 1167 A 1 HETATM 5 C C6 SAV . . . F 3 14.595 16.257 15.725 1 67.87 ? C6 SAV 1167 A 1 HETATM 6 C C7 SAV . . . F 3 15.747 15.517 15.67 1 70.26 ? C7 SAV 1167 A 1 HETATM 7 C C8 SAV . . . F 3 16.808 15.938 16.431 1 70.85 ? C8 SAV 1167 A 1 HETATM 8 C C10 SAV . . . F 3 19.731 16.575 17.319 1 79.69 ? C10 SAV 1167 A 1 HETATM 9 C C13 SAV . . . F 3 22.24 15.599 19.922 1 79.93 ? C13 SAV 1167 A 1 HETATM 10 C C15 SAV . . . F 3 20.561 14.565 18.878 1 80.6 ? C15 SAV 1167 A 1 HETATM 11 C C17 SAV . . . F 3 16.403 20.761 19.004 1 74.52 ? C17 SAV 1167 A 1 HETATM 12 C C20 SAV . . . F 3 18.363 20.601 20.379 1 74.94 ? C20 SAV 1167 A 1 HETATM 13 C C21 SAV . . . F 3 18.717 21.751 22.289 1 75.77 ? C21 SAV 1167 A 1 HETATM 14 C C1 SAV . . . F 3 18.669 17.666 21.75 1 74.37 ? C1 SAV 1167 A 1 HETATM 15 O O1 SAV . . . F 3 19.34 18.448 20.755 1 75.52 ? O1 SAV 1167 A 1 HETATM 16 C C2 SAV . . . F 3 18.353 19.235 20.176 1 75.45 ? C2 SAV 1167 A 1 HETATM 17 C C3 SAV . . . F 3 17.384 18.637 19.398 1 73.75 ? C3 SAV 1167 A 1 HETATM 18 N N2 SAV . . . F 3 14.449 17.349 16.468 1 69.25 ? N2 SAV 1167 A 1 HETATM 19 C C9 SAV . . . F 3 19.081 15.359 17.255 1 79.29 ? C9 SAV 1167 A 1 HETATM 20 C C11 SAV . . . F 3 20.798 16.818 18.154 1 79.72 ? C11 SAV 1167 A 1 HETATM 21 C C12 SAV . . . F 3 21.218 15.777 18.951 1 79.58 ? C12 SAV 1167 A 1 HETATM 22 C C14 SAV . . . F 3 23.235 16.584 20.394 1 79.52 ? C14 SAV 1167 A 1 HETATM 23 N N4 SAV . . . F 3 22.224 14.357 20.427 1 80.18 ? N4 SAV 1167 A 1 HETATM 24 N N5 SAV . . . F 3 21.202 13.755 19.778 1 80.33 ? N5 SAV 1167 A 1 HETATM 25 C C16 SAV . . . F 3 19.495 14.312 18.049 1 79.56 ? C16 SAV 1167 A 1 HETATM 26 N N6 SAV . . . F 3 16.688 17.035 17.181 1 68.73 ? N6 SAV 1167 A 1 HETATM 27 C C18 SAV . . . F 3 17.371 21.362 19.786 1 74.63 ? C18 SAV 1167 A 1 HETATM 28 O O2 SAV . . . F 3 17.35 22.735 19.962 1 74.29 ? O2 SAV 1167 A 1 HETATM 29 C C19 SAV . . . F 3 16.004 23.141 20.148 1 74.66 ? C19 SAV 1167 A 1 HETATM 30 O O3 SAV . . . F 3 19.374 21.159 21.163 1 75.05 ? O3 SAV 1167 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 30 #