data_3CJG
#
_model_server_result.job_id            OLw9r7oScqM5I8uPBu94kA 
_model_server_result.datetime_utc      '2024-11-24 13:54:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3cjg 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1167}' 
#
_entry.id    3CJG 
#
_exptl.entry_id    3CJG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              420.464 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N~4~-methyl-N~4~-(3-methyl-1H-indazol-6-yl)-N~2~-(3,4,5-trimethoxyphenyl)pyrimidine-2,4-diamine 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3CJG 
_cell.length_a            37.7 
_cell.length_b            95.54 
_cell.length_c            97.01 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3CJG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C THR 56 A THR 859 1_555 A N CSO 57 A CSO 860 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.337 ? 
covale ? covale2 A C THR 56 A THR 859 1_555 A N CSO 57 A CSO 860 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.33 ? 
covale ? covale3 A C CSO 57 A CSO 860 1_555 A N ARG 58 A ARG 861 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.33 ? 
covale ? covale4 A C CSO 57 A CSO 860 1_555 A N ARG 58 A ARG 861 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.325 ? 
covale ? covale5 A C LYS 164 A LYS 1021 1_555 A N CSO 165 A CSO 1022 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
covale ? covale6 A C CSO 165 A CSO 1022 1_555 A N ILE 166 A ILE 1023 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
#
_chem_comp.formula           'C22 H24 N6 O3' 
_chem_comp.formula_weight    420.464 
_chem_comp.id                KIM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N~4~-methyl-N~4~-(3-methyl-1H-indazol-6-yl)-N~2~-(3,4,5-trimethoxyphenyl)pyrimidine-2,4-diamine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C4 KIM sing 187 n n 
N1 C5 KIM sing 188 n n 
N3 C5 KIM doub 189 n y 
N3 C8 KIM sing 190 n y 
C4 C3 KIM doub 191 n y 
C4 C18 KIM sing 192 n y 
C5 N2 KIM sing 193 n y 
C6 C7 KIM sing 194 n y 
C6 N2 KIM doub 195 n y 
C7 C8 KIM doub 196 n y 
C8 N4 KIM sing 197 n n 
C10 C17 KIM doub 198 n y 
C10 N4 KIM sing 199 n n 
C10 C11 KIM sing 200 n y 
C13 C12 KIM sing 201 n y 
C13 C14 KIM sing 202 n y 
C13 C16 KIM doub 203 n y 
C15 C14 KIM sing 204 n n 
C17 C16 KIM sing 205 n y 
C20 O2 KIM sing 206 n n 
C21 C2 KIM doub 207 n y 
C21 C19 KIM sing 208 n y 
C21 O3 KIM sing 209 n n 
C22 O3 KIM sing 210 n n 
C1 O1 KIM sing 211 n n 
O1 C2 KIM sing 212 n n 
C2 C3 KIM sing 213 n y 
N4 C9 KIM sing 214 n n 
C11 C12 KIM doub 215 n y 
C14 N5 KIM doub 216 n y 
N5 N6 KIM sing 217 n y 
N6 C16 KIM sing 218 n y 
C18 C19 KIM doub 219 n y 
C19 O2 KIM sing 220 n n 
N1 HN1 KIM sing 221 n n 
C6 H6 KIM sing 222 n n 
C7 H7 KIM sing 223 n n 
C15 H15 KIM sing 224 n n 
C15 H15A KIM sing 225 n n 
C15 H15B KIM sing 226 n n 
C17 H17 KIM sing 227 n n 
C20 H20 KIM sing 228 n n 
C20 H20A KIM sing 229 n n 
C20 H20B KIM sing 230 n n 
C22 H22 KIM sing 231 n n 
C22 H22A KIM sing 232 n n 
C22 H22B KIM sing 233 n n 
C1 H1 KIM sing 234 n n 
C1 H1A KIM sing 235 n n 
C1 H1B KIM sing 236 n n 
C3 H3 KIM sing 237 n n 
C9 H9 KIM sing 238 n n 
C9 H9A KIM sing 239 n n 
C9 H9B KIM sing 240 n n 
C11 H11 KIM sing 241 n n 
C12 H12 KIM sing 242 n n 
N6 HN6 KIM sing 243 n n 
C18 H18 KIM sing 244 n n 
#
_atom_sites.entry_id                     3CJG 
_atom_sites.fract_transf_matrix[1][1]    0.026525 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010467 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010308 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SO4 A 1 1 1 SO4 SO4 . 
C 2 SO4 A 1 2 2 SO4 SO4 . 
D 3 KIM A 1 1167 1 KIM LIG . 
E 4 HOH A 1 1168 1 HOH HOH . 
E 4 HOH A 2 1169 2 HOH HOH . 
E 4 HOH A 3 1170 3 HOH HOH . 
E 4 HOH A 4 1171 4 HOH HOH . 
E 4 HOH A 5 1172 5 HOH HOH . 
E 4 HOH A 6 1173 6 HOH HOH . 
E 4 HOH A 7 1174 7 HOH HOH . 
E 4 HOH A 8 1175 8 HOH HOH . 
E 4 HOH A 9 1176 9 HOH HOH . 
E 4 HOH A 10 1177 10 HOH HOH . 
E 4 HOH A 11 1178 11 HOH HOH . 
E 4 HOH A 12 1179 12 HOH HOH . 
E 4 HOH A 13 1180 13 HOH HOH . 
E 4 HOH A 14 1181 14 HOH HOH . 
E 4 HOH A 15 1182 15 HOH HOH . 
E 4 HOH A 16 1183 16 HOH HOH . 
E 4 HOH A 17 1184 17 HOH HOH . 
E 4 HOH A 18 1185 18 HOH HOH . 
E 4 HOH A 19 1186 19 HOH HOH . 
E 4 HOH A 20 1187 20 HOH HOH . 
E 4 HOH A 21 1188 21 HOH HOH . 
E 4 HOH A 22 1189 22 HOH HOH . 
E 4 HOH A 23 1190 23 HOH HOH . 
E 4 HOH A 24 1191 24 HOH HOH . 
E 4 HOH A 25 1192 25 HOH HOH . 
E 4 HOH A 26 1193 26 HOH HOH . 
E 4 HOH A 27 1194 27 HOH HOH . 
E 4 HOH A 28 1195 28 HOH HOH . 
E 4 HOH A 29 1196 29 HOH HOH . 
E 4 HOH A 30 1197 30 HOH HOH . 
E 4 HOH A 31 1198 31 HOH HOH . 
E 4 HOH A 32 1199 32 HOH HOH . 
E 4 HOH A 33 1200 33 HOH HOH . 
E 4 HOH A 34 1201 34 HOH HOH . 
E 4 HOH A 35 1202 35 HOH HOH . 
E 4 HOH A 36 1203 36 HOH HOH . 
E 4 HOH A 37 1204 37 HOH HOH . 
E 4 HOH A 38 1205 38 HOH HOH . 
E 4 HOH A 39 1206 39 HOH HOH . 
E 4 HOH A 40 1207 40 HOH HOH . 
E 4 HOH A 41 1208 41 HOH HOH . 
E 4 HOH A 42 1209 42 HOH HOH . 
E 4 HOH A 43 1210 43 HOH HOH . 
E 4 HOH A 44 1211 44 HOH HOH . 
E 4 HOH A 45 1212 45 HOH HOH . 
E 4 HOH A 46 1213 46 HOH HOH . 
E 4 HOH A 47 1214 47 HOH HOH . 
E 4 HOH A 48 1215 48 HOH HOH . 
E 4 HOH A 49 1216 49 HOH HOH . 
E 4 HOH A 50 1217 50 HOH HOH . 
E 4 HOH A 51 1218 51 HOH HOH . 
E 4 HOH A 52 1219 52 HOH HOH . 
E 4 HOH A 53 1220 53 HOH HOH . 
E 4 HOH A 54 1221 54 HOH HOH . 
E 4 HOH A 55 1222 55 HOH HOH . 
E 4 HOH A 56 1223 56 HOH HOH . 
E 4 HOH A 57 1224 57 HOH HOH . 
E 4 HOH A 58 1225 58 HOH HOH . 
E 4 HOH A 59 1226 59 HOH HOH . 
E 4 HOH A 60 1227 60 HOH HOH . 
E 4 HOH A 61 1228 61 HOH HOH . 
E 4 HOH A 62 1229 62 HOH HOH . 
E 4 HOH A 63 1230 63 HOH HOH . 
E 4 HOH A 64 1231 64 HOH HOH . 
E 4 HOH A 65 1232 65 HOH HOH . 
E 4 HOH A 66 1233 66 HOH HOH . 
E 4 HOH A 67 1234 67 HOH HOH . 
E 4 HOH A 68 1235 68 HOH HOH . 
E 4 HOH A 69 1236 69 HOH HOH . 
E 4 HOH A 70 1237 70 HOH HOH . 
E 4 HOH A 71 1238 71 HOH HOH . 
E 4 HOH A 72 1239 72 HOH HOH . 
E 4 HOH A 73 1240 73 HOH HOH . 
E 4 HOH A 74 1241 74 HOH HOH . 
E 4 HOH A 75 1242 75 HOH HOH . 
E 4 HOH A 76 1243 76 HOH HOH . 
E 4 HOH A 77 1244 77 HOH HOH . 
E 4 HOH A 78 1245 78 HOH HOH . 
E 4 HOH A 79 1246 79 HOH HOH . 
E 4 HOH A 80 1247 80 HOH HOH . 
E 4 HOH A 81 1248 81 HOH HOH . 
E 4 HOH A 82 1249 82 HOH HOH . 
E 4 HOH A 83 1250 83 HOH HOH . 
E 4 HOH A 84 1251 84 HOH HOH . 
E 4 HOH A 85 1252 85 HOH HOH . 
E 4 HOH A 86 1253 86 HOH HOH . 
E 4 HOH A 87 1254 87 HOH HOH . 
E 4 HOH A 88 1255 88 HOH HOH . 
E 4 HOH A 89 1256 89 HOH HOH . 
E 4 HOH A 90 1257 90 HOH HOH . 
E 4 HOH A 91 1258 91 HOH HOH . 
E 4 HOH A 92 1259 92 HOH HOH . 
E 4 HOH A 93 1260 93 HOH HOH . 
E 4 HOH A 94 1261 94 HOH HOH . 
E 4 HOH A 95 1262 95 HOH HOH . 
E 4 HOH A 96 1263 96 HOH HOH . 
E 4 HOH A 97 1264 97 HOH HOH . 
E 4 HOH A 98 1265 98 HOH HOH . 
E 4 HOH A 99 1266 99 HOH HOH . 
E 4 HOH A 100 1267 100 HOH HOH . 
E 4 HOH A 101 1268 101 HOH HOH . 
E 4 HOH A 102 1269 102 HOH HOH . 
E 4 HOH A 103 1270 103 HOH HOH . 
E 4 HOH A 104 1271 104 HOH HOH . 
E 4 HOH A 105 1272 105 HOH HOH . 
E 4 HOH A 106 1273 106 HOH HOH . 
E 4 HOH A 107 1274 107 HOH HOH . 
E 4 HOH A 108 1275 108 HOH HOH . 
E 4 HOH A 109 1276 109 HOH HOH . 
E 4 HOH A 110 1277 110 HOH HOH . 
E 4 HOH A 111 1278 111 HOH HOH . 
E 4 HOH A 112 1279 112 HOH HOH . 
E 4 HOH A 113 1280 113 HOH HOH . 
E 4 HOH A 114 1281 114 HOH HOH . 
E 4 HOH A 115 1282 115 HOH HOH . 
E 4 HOH A 116 1283 116 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 KIM . . . D 3 6.02 41.728 5.07 1 49.66 ? N1 KIM 1167 A 1 
HETATM 2 N N3 KIM . . . D 3 7.192 40.777 6.94 1 45.99 ? N3 KIM 1167 A 1 
HETATM 3 C C4 KIM . . . D 3 7.016 42.606 4.591 1 50.38 ? C4 KIM 1167 A 1 
HETATM 4 C C5 KIM . . . D 3 6.066 40.922 6.223 1 47.77 ? C5 KIM 1167 A 1 
HETATM 5 C C6 KIM . . . D 3 4.909 39.554 7.585 1 45.46 ? C6 KIM 1167 A 1 
HETATM 6 C C7 KIM . . . D 3 6.005 39.354 8.373 1 46.7 ? C7 KIM 1167 A 1 
HETATM 7 C C8 KIM . . . D 3 7.171 39.999 8.023 1 47.36 ? C8 KIM 1167 A 1 
HETATM 8 C C10 KIM . . . D 3 8.542 38.835 9.794 1 52.21 ? C10 KIM 1167 A 1 
HETATM 9 C C13 KIM . . . D 3 8.939 36.897 11.71 1 53.1 ? C13 KIM 1167 A 1 
HETATM 10 C C15 KIM . . . D 3 9.126 34.806 13.269 1 52.13 ? C15 KIM 1167 A 1 
HETATM 11 C C17 KIM . . . D 3 9.168 39.202 10.972 1 52.72 ? C17 KIM 1167 A 1 
HETATM 12 C C20 KIM . . . D 3 6.656 43.904 0.789 1 48.87 ? C20 KIM 1167 A 1 
HETATM 13 C C21 KIM . . . D 3 8.905 44.341 3.549 1 51.63 ? C21 KIM 1167 A 1 
HETATM 14 C C22 KIM . . . D 3 10.906 44.39 2.514 1 54.07 ? C22 KIM 1167 A 1 
HETATM 15 C C1 KIM . . . D 3 9.619 44.717 6.869 1 54.21 ? C1 KIM 1167 A 1 
HETATM 16 O O1 KIM . . . D 3 10.11 44.285 5.6 1 51.95 ? O1 KIM 1167 A 1 
HETATM 17 C C2 KIM . . . D 3 9.028 43.881 4.839 1 52.07 ? C2 KIM 1167 A 1 
HETATM 18 C C3 KIM . . . D 3 8.09 43.015 5.357 1 51.16 ? C3 KIM 1167 A 1 
HETATM 19 N N2 KIM . . . D 3 4.906 40.328 6.507 1 47.44 ? N2 KIM 1167 A 1 
HETATM 20 N N4 KIM . . . D 3 8.327 39.816 8.815 1 50.49 ? N4 KIM 1167 A 1 
HETATM 21 C C9 KIM . . . D 3 9.472 40.674 8.55 1 48.43 ? C9 KIM 1167 A 1 
HETATM 22 C C11 KIM . . . D 3 8.13 37.531 9.589 1 52.23 ? C11 KIM 1167 A 1 
HETATM 23 C C12 KIM . . . D 3 8.316 36.539 10.529 1 51.63 ? C12 KIM 1167 A 1 
HETATM 24 C C14 KIM . . . D 3 9.318 36.223 12.905 1 52.9 ? C14 KIM 1167 A 1 
HETATM 25 N N5 KIM . . . D 3 9.92 37.051 13.763 1 52.82 ? N5 KIM 1167 A 1 
HETATM 26 N N6 KIM . . . D 3 9.928 38.237 13.134 1 53.05 ? N6 KIM 1167 A 1 
HETATM 27 C C16 KIM . . . D 3 9.349 38.203 11.896 1 53.36 ? C16 KIM 1167 A 1 
HETATM 28 C C18 KIM . . . D 3 6.895 43.073 3.298 1 50.42 ? C18 KIM 1167 A 1 
HETATM 29 C C19 KIM . . . D 3 7.837 43.936 2.782 1 50.32 ? C19 KIM 1167 A 1 
HETATM 30 O O2 KIM . . . D 3 7.771 44.433 1.491 1 51.59 ? O2 KIM 1167 A 1 
HETATM 31 O O3 KIM . . . D 3 9.858 45.211 3.032 1 52.33 ? O3 KIM 1167 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           350 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           31 
#