data_3CKJ # _model_server_result.job_id -wKl1vY1tEiOIrANZb5lSA _model_server_result.datetime_utc '2025-09-01 01:09:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ckj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":332}' # _entry.id 3CKJ # _exptl.entry_id 3CKJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4R)-2-METHYLPENTANE-2,4-DIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3CKJ _cell.length_a 86.6 _cell.length_b 86.6 _cell.length_c 104.3 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3CKJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MRD _chem_comp.mon_nstd_flag . _chem_comp.name (4R)-2-METHYLPENTANE-2,4-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MRD sing 257 n n C1 H1C1 MRD sing 258 n n C1 H1C2 MRD sing 259 n n C1 H1C3 MRD sing 260 n n C2 O2 MRD sing 261 n n C2 CM MRD sing 262 n n C2 C3 MRD sing 263 n n O2 H2 MRD sing 264 n n CM HMC1 MRD sing 265 n n CM HMC2 MRD sing 266 n n CM HMC3 MRD sing 267 n n C3 C4 MRD sing 268 n n C3 H3C1 MRD sing 269 n n C3 H3C2 MRD sing 270 n n C4 O4 MRD sing 271 n n C4 C5 MRD sing 272 n n C4 H4 MRD sing 273 n n O4 HA MRD sing 274 n n C5 H5C1 MRD sing 275 n n C5 H5C2 MRD sing 276 n n C5 H5C3 MRD sing 277 n n # _atom_sites.entry_id 3CKJ _atom_sites.fract_transf_matrix[1][1] 0.011548 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011548 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009583 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 330 1 PO4 PO4 . C 3 CIT A 1 331 1 CIT CIT . D 4 MRD A 1 332 1 MRD MPD . E 4 MRD A 1 333 2 MRD MPD . F 4 MRD A 1 334 3 MRD MPD . G 5 HOH A 1 335 1 HOH HOH . G 5 HOH A 2 336 2 HOH HOH . G 5 HOH A 3 337 3 HOH HOH . G 5 HOH A 4 338 4 HOH HOH . G 5 HOH A 5 339 5 HOH HOH . G 5 HOH A 6 340 6 HOH HOH . G 5 HOH A 7 341 7 HOH HOH . G 5 HOH A 8 342 8 HOH HOH . G 5 HOH A 9 343 9 HOH HOH . G 5 HOH A 10 344 10 HOH HOH . G 5 HOH A 11 345 11 HOH HOH . G 5 HOH A 12 346 12 HOH HOH . G 5 HOH A 13 347 13 HOH HOH . G 5 HOH A 14 348 14 HOH HOH . G 5 HOH A 15 349 15 HOH HOH . G 5 HOH A 16 350 16 HOH HOH . G 5 HOH A 17 351 17 HOH HOH . G 5 HOH A 18 352 18 HOH HOH . G 5 HOH A 19 353 19 HOH HOH . G 5 HOH A 20 354 20 HOH HOH . G 5 HOH A 21 355 21 HOH HOH . G 5 HOH A 22 356 22 HOH HOH . G 5 HOH A 23 357 23 HOH HOH . G 5 HOH A 24 358 24 HOH HOH . G 5 HOH A 25 359 25 HOH HOH . G 5 HOH A 26 360 26 HOH HOH . G 5 HOH A 27 361 27 HOH HOH . G 5 HOH A 28 362 28 HOH HOH . G 5 HOH A 29 363 29 HOH HOH . G 5 HOH A 30 364 30 HOH HOH . G 5 HOH A 31 365 31 HOH HOH . G 5 HOH A 32 366 32 HOH HOH . G 5 HOH A 33 367 33 HOH HOH . G 5 HOH A 34 368 34 HOH HOH . G 5 HOH A 35 369 35 HOH HOH . G 5 HOH A 36 370 36 HOH HOH . G 5 HOH A 37 371 37 HOH HOH . G 5 HOH A 38 372 38 HOH HOH . G 5 HOH A 39 373 39 HOH HOH . G 5 HOH A 40 374 40 HOH HOH . G 5 HOH A 41 375 41 HOH HOH . G 5 HOH A 42 376 42 HOH HOH . G 5 HOH A 43 377 43 HOH HOH . G 5 HOH A 44 378 44 HOH HOH . G 5 HOH A 45 379 45 HOH HOH . G 5 HOH A 46 380 46 HOH HOH . G 5 HOH A 47 381 47 HOH HOH . G 5 HOH A 48 382 48 HOH HOH . G 5 HOH A 49 383 49 HOH HOH . G 5 HOH A 50 384 50 HOH HOH . G 5 HOH A 51 385 51 HOH HOH . G 5 HOH A 52 386 52 HOH HOH . G 5 HOH A 53 387 53 HOH HOH . G 5 HOH A 54 388 54 HOH HOH . G 5 HOH A 55 389 55 HOH HOH . G 5 HOH A 56 390 56 HOH HOH . G 5 HOH A 57 391 57 HOH HOH . G 5 HOH A 58 392 58 HOH HOH . G 5 HOH A 59 393 59 HOH HOH . G 5 HOH A 60 394 60 HOH HOH . G 5 HOH A 61 395 61 HOH HOH . G 5 HOH A 62 396 62 HOH HOH . G 5 HOH A 63 397 63 HOH HOH . G 5 HOH A 64 398 64 HOH HOH . G 5 HOH A 65 399 65 HOH HOH . G 5 HOH A 66 400 66 HOH HOH . G 5 HOH A 67 401 67 HOH HOH . G 5 HOH A 68 402 68 HOH HOH . G 5 HOH A 69 403 69 HOH HOH . G 5 HOH A 70 404 70 HOH HOH . G 5 HOH A 71 405 71 HOH HOH . G 5 HOH A 72 406 72 HOH HOH . G 5 HOH A 73 407 73 HOH HOH . G 5 HOH A 74 408 74 HOH HOH . G 5 HOH A 75 409 75 HOH HOH . G 5 HOH A 76 410 76 HOH HOH . G 5 HOH A 77 411 77 HOH HOH . G 5 HOH A 78 412 78 HOH HOH . G 5 HOH A 79 413 79 HOH HOH . G 5 HOH A 80 414 80 HOH HOH . G 5 HOH A 81 415 81 HOH HOH . G 5 HOH A 82 416 82 HOH HOH . G 5 HOH A 83 417 83 HOH HOH . G 5 HOH A 84 418 84 HOH HOH . G 5 HOH A 85 419 85 HOH HOH . G 5 HOH A 86 420 86 HOH HOH . G 5 HOH A 87 421 87 HOH HOH . G 5 HOH A 88 422 88 HOH HOH . G 5 HOH A 89 423 89 HOH HOH . G 5 HOH A 90 424 90 HOH HOH . G 5 HOH A 91 425 91 HOH HOH . G 5 HOH A 92 426 92 HOH HOH . G 5 HOH A 93 427 93 HOH HOH . G 5 HOH A 94 428 94 HOH HOH . G 5 HOH A 95 429 95 HOH HOH . G 5 HOH A 96 430 96 HOH HOH . G 5 HOH A 97 431 97 HOH HOH . G 5 HOH A 98 432 98 HOH HOH . G 5 HOH A 99 433 99 HOH HOH . G 5 HOH A 100 434 100 HOH HOH . G 5 HOH A 101 435 101 HOH HOH . G 5 HOH A 102 436 102 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MRD . . . D 4 6.638 27.894 15.671 1 77.63 ? C1 MRD 332 A 1 HETATM 2 C C2 MRD . . . D 4 6.814 26.696 14.738 1 77.82 ? C2 MRD 332 A 1 HETATM 3 O O2 MRD . . . D 4 5.523 26.079 14.452 1 78.16 ? O2 MRD 332 A 1 HETATM 4 C CM MRD . . . D 4 7.417 27.203 13.432 1 77.91 ? CM MRD 332 A 1 HETATM 5 C C3 MRD . . . D 4 7.724 25.656 15.394 1 77.09 ? C3 MRD 332 A 1 HETATM 6 C C4 MRD . . . D 4 7.084 24.278 15.579 1 76.54 ? C4 MRD 332 A 1 HETATM 7 O O4 MRD . . . D 4 7.048 23.908 16.951 1 74.03 ? O4 MRD 332 A 1 HETATM 8 C C5 MRD . . . D 4 7.817 23.219 14.754 1 76.59 ? C5 MRD 332 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 364 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 8 #