data_3CKK # _model_server_result.job_id 9NMWSA8uNDziyJ8rBqYVrQ _model_server_result.datetime_utc '2024-10-25 20:26:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ckk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 3CKK # _exptl.entry_id 3CKK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3CKK _cell.length_a 90.316 _cell.length_b 90.316 _cell.length_c 54.94 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3CKK _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3CKK _atom_sites.fract_transf_matrix[1][1] 0.011072 _atom_sites.fract_transf_matrix[1][2] 0.006393 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012785 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018202 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SAM A 1 301 301 SAM SAM . C 3 GOL A 1 302 302 GOL GOL . D 4 HOH A 1 303 303 HOH HOH . D 4 HOH A 2 304 304 HOH HOH . D 4 HOH A 3 305 305 HOH HOH . D 4 HOH A 4 306 306 HOH HOH . D 4 HOH A 5 307 307 HOH HOH . D 4 HOH A 6 308 308 HOH HOH . D 4 HOH A 7 309 309 HOH HOH . D 4 HOH A 8 310 310 HOH HOH . D 4 HOH A 9 311 311 HOH HOH . D 4 HOH A 10 312 312 HOH HOH . D 4 HOH A 11 313 313 HOH HOH . D 4 HOH A 12 314 314 HOH HOH . D 4 HOH A 13 315 315 HOH HOH . D 4 HOH A 14 316 316 HOH HOH . D 4 HOH A 15 317 317 HOH HOH . D 4 HOH A 16 318 318 HOH HOH . D 4 HOH A 17 319 319 HOH HOH . D 4 HOH A 18 320 320 HOH HOH . D 4 HOH A 19 321 321 HOH HOH . D 4 HOH A 20 322 322 HOH HOH . D 4 HOH A 21 323 323 HOH HOH . D 4 HOH A 22 324 324 HOH HOH . D 4 HOH A 23 325 325 HOH HOH . D 4 HOH A 24 326 326 HOH HOH . D 4 HOH A 25 327 327 HOH HOH . D 4 HOH A 26 328 328 HOH HOH . D 4 HOH A 27 329 329 HOH HOH . D 4 HOH A 28 330 330 HOH HOH . D 4 HOH A 29 331 331 HOH HOH . D 4 HOH A 30 332 332 HOH HOH . D 4 HOH A 31 333 333 HOH HOH . D 4 HOH A 32 334 334 HOH HOH . D 4 HOH A 33 335 335 HOH HOH . D 4 HOH A 34 336 336 HOH HOH . D 4 HOH A 35 337 337 HOH HOH . D 4 HOH A 36 338 338 HOH HOH . D 4 HOH A 37 339 339 HOH HOH . D 4 HOH A 38 340 340 HOH HOH . D 4 HOH A 39 341 341 HOH HOH . D 4 HOH A 40 342 342 HOH HOH . D 4 HOH A 41 343 343 HOH HOH . D 4 HOH A 42 344 344 HOH HOH . D 4 HOH A 43 345 345 HOH HOH . D 4 HOH A 44 346 346 HOH HOH . D 4 HOH A 45 347 347 HOH HOH . D 4 HOH A 46 348 348 HOH HOH . D 4 HOH A 47 349 349 HOH HOH . D 4 HOH A 48 350 350 HOH HOH . D 4 HOH A 49 351 351 HOH HOH . D 4 HOH A 50 352 352 HOH HOH . D 4 HOH A 51 353 353 HOH HOH . D 4 HOH A 52 354 354 HOH HOH . D 4 HOH A 53 355 355 HOH HOH . D 4 HOH A 54 356 356 HOH HOH . D 4 HOH A 55 357 357 HOH HOH . D 4 HOH A 56 358 358 HOH HOH . D 4 HOH A 57 359 359 HOH HOH . D 4 HOH A 58 360 360 HOH HOH . D 4 HOH A 59 361 361 HOH HOH . D 4 HOH A 60 362 362 HOH HOH . D 4 HOH A 61 363 363 HOH HOH . D 4 HOH A 62 364 364 HOH HOH . D 4 HOH A 63 365 365 HOH HOH . D 4 HOH A 64 366 366 HOH HOH . D 4 HOH A 65 367 367 HOH HOH . D 4 HOH A 66 368 368 HOH HOH . D 4 HOH A 67 369 369 HOH HOH . D 4 HOH A 68 370 370 HOH HOH . D 4 HOH A 69 371 371 HOH HOH . D 4 HOH A 70 372 372 HOH HOH . D 4 HOH A 71 373 373 HOH HOH . D 4 HOH A 72 374 374 HOH HOH . D 4 HOH A 73 375 375 HOH HOH . D 4 HOH A 74 376 376 HOH HOH . D 4 HOH A 75 377 377 HOH HOH . D 4 HOH A 76 378 378 HOH HOH . D 4 HOH A 77 379 379 HOH HOH . D 4 HOH A 78 380 380 HOH HOH . D 4 HOH A 79 381 381 HOH HOH . D 4 HOH A 80 382 382 HOH HOH . D 4 HOH A 81 383 383 HOH HOH . D 4 HOH A 82 384 384 HOH HOH . D 4 HOH A 83 385 385 HOH HOH . D 4 HOH A 84 386 386 HOH HOH . D 4 HOH A 85 387 387 HOH HOH . D 4 HOH A 86 388 388 HOH HOH . D 4 HOH A 87 389 389 HOH HOH . D 4 HOH A 88 390 390 HOH HOH . D 4 HOH A 89 391 391 HOH HOH . D 4 HOH A 90 392 392 HOH HOH . D 4 HOH A 91 393 393 HOH HOH . D 4 HOH A 92 394 394 HOH HOH . D 4 HOH A 93 395 395 HOH HOH . D 4 HOH A 94 396 396 HOH HOH . D 4 HOH A 95 397 397 HOH HOH . D 4 HOH A 96 398 398 HOH HOH . D 4 HOH A 97 399 399 HOH HOH . D 4 HOH A 98 400 400 HOH HOH . D 4 HOH A 99 401 401 HOH HOH . D 4 HOH A 100 402 402 HOH HOH . D 4 HOH A 101 403 403 HOH HOH . D 4 HOH A 102 404 404 HOH HOH . D 4 HOH A 103 405 405 HOH HOH . D 4 HOH A 104 406 406 HOH HOH . D 4 HOH A 105 407 407 HOH HOH . D 4 HOH A 106 408 408 HOH HOH . D 4 HOH A 107 409 409 HOH HOH . D 4 HOH A 108 410 410 HOH HOH . D 4 HOH A 109 411 411 HOH HOH . D 4 HOH A 110 412 412 HOH HOH . D 4 HOH A 111 413 413 HOH HOH . D 4 HOH A 112 414 414 HOH HOH . D 4 HOH A 113 415 415 HOH HOH . D 4 HOH A 114 416 416 HOH HOH . D 4 HOH A 115 417 417 HOH HOH . D 4 HOH A 116 418 418 HOH HOH . D 4 HOH A 117 419 419 HOH HOH . D 4 HOH A 118 420 420 HOH HOH . D 4 HOH A 119 421 421 HOH HOH . D 4 HOH A 120 422 422 HOH HOH . D 4 HOH A 121 423 423 HOH HOH . D 4 HOH A 122 424 424 HOH HOH . D 4 HOH A 123 425 425 HOH HOH . D 4 HOH A 124 426 426 HOH HOH . D 4 HOH A 125 427 427 HOH HOH . D 4 HOH A 126 428 428 HOH HOH . D 4 HOH A 127 429 429 HOH HOH . D 4 HOH A 128 430 430 HOH HOH . D 4 HOH A 129 431 431 HOH HOH . D 4 HOH A 130 432 432 HOH HOH . D 4 HOH A 131 433 433 HOH HOH . D 4 HOH A 132 434 434 HOH HOH . D 4 HOH A 133 435 435 HOH HOH . D 4 HOH A 134 436 436 HOH HOH . D 4 HOH A 135 437 437 HOH HOH . D 4 HOH A 136 438 438 HOH HOH . D 4 HOH A 137 439 439 HOH HOH . D 4 HOH A 138 440 440 HOH HOH . D 4 HOH A 139 441 441 HOH HOH . D 4 HOH A 140 442 442 HOH HOH . D 4 HOH A 141 443 443 HOH HOH . D 4 HOH A 142 444 444 HOH HOH . D 4 HOH A 143 445 445 HOH HOH . D 4 HOH A 144 446 446 HOH HOH . D 4 HOH A 145 447 447 HOH HOH . D 4 HOH A 146 448 448 HOH HOH . D 4 HOH A 147 449 449 HOH HOH . D 4 HOH A 148 450 450 HOH HOH . D 4 HOH A 149 451 451 HOH HOH . D 4 HOH A 150 452 452 HOH HOH . D 4 HOH A 151 453 453 HOH HOH . D 4 HOH A 152 454 454 HOH HOH . D 4 HOH A 153 455 455 HOH HOH . D 4 HOH A 154 456 456 HOH HOH . D 4 HOH A 155 457 457 HOH HOH . D 4 HOH A 156 458 458 HOH HOH . D 4 HOH A 157 459 459 HOH HOH . D 4 HOH A 158 460 460 HOH HOH . D 4 HOH A 159 461 461 HOH HOH . D 4 HOH A 160 462 462 HOH HOH . D 4 HOH A 161 463 463 HOH HOH . D 4 HOH A 162 464 464 HOH HOH . D 4 HOH A 163 465 465 HOH HOH . D 4 HOH A 164 466 466 HOH HOH . D 4 HOH A 165 467 467 HOH HOH . D 4 HOH A 166 468 468 HOH HOH . D 4 HOH A 167 470 470 HOH HOH . D 4 HOH A 168 471 471 HOH HOH . D 4 HOH A 169 472 472 HOH HOH . D 4 HOH A 170 473 473 HOH HOH . D 4 HOH A 171 474 474 HOH HOH . D 4 HOH A 172 475 475 HOH HOH . D 4 HOH A 173 476 476 HOH HOH . D 4 HOH A 174 477 477 HOH HOH . D 4 HOH A 175 478 478 HOH HOH . D 4 HOH A 176 479 479 HOH HOH . D 4 HOH A 177 480 480 HOH HOH . D 4 HOH A 178 481 481 HOH HOH . D 4 HOH A 179 482 482 HOH HOH . D 4 HOH A 180 483 483 HOH HOH . D 4 HOH A 181 484 484 HOH HOH . D 4 HOH A 182 485 485 HOH HOH . D 4 HOH A 183 486 486 HOH HOH . D 4 HOH A 184 487 487 HOH HOH . D 4 HOH A 185 488 488 HOH HOH . D 4 HOH A 186 489 489 HOH HOH . D 4 HOH A 187 490 490 HOH HOH . D 4 HOH A 188 491 491 HOH HOH . D 4 HOH A 189 492 492 HOH HOH . D 4 HOH A 190 493 493 HOH HOH . D 4 HOH A 191 494 494 HOH HOH . D 4 HOH A 192 495 495 HOH HOH . D 4 HOH A 193 496 496 HOH HOH . D 4 HOH A 194 497 497 HOH HOH . D 4 HOH A 195 498 498 HOH HOH . D 4 HOH A 196 499 499 HOH HOH . D 4 HOH A 197 500 500 HOH HOH . D 4 HOH A 198 501 501 HOH HOH . D 4 HOH A 199 502 502 HOH HOH . D 4 HOH A 200 503 503 HOH HOH . D 4 HOH A 201 504 504 HOH HOH . D 4 HOH A 202 505 505 HOH HOH . D 4 HOH A 203 506 506 HOH HOH . D 4 HOH A 204 507 507 HOH HOH . D 4 HOH A 205 508 508 HOH HOH . D 4 HOH A 206 509 509 HOH HOH . D 4 HOH A 207 510 510 HOH HOH . D 4 HOH A 208 511 511 HOH HOH . D 4 HOH A 209 512 512 HOH HOH . D 4 HOH A 210 513 513 HOH HOH . D 4 HOH A 211 514 514 HOH HOH . D 4 HOH A 212 515 515 HOH HOH . D 4 HOH A 213 516 516 HOH HOH . D 4 HOH A 214 517 517 HOH HOH . D 4 HOH A 215 518 518 HOH HOH . D 4 HOH A 216 519 519 HOH HOH . D 4 HOH A 217 520 520 HOH HOH . D 4 HOH A 218 521 521 HOH HOH . D 4 HOH A 219 522 522 HOH HOH . D 4 HOH A 220 523 523 HOH HOH . D 4 HOH A 221 524 524 HOH HOH . D 4 HOH A 222 525 525 HOH HOH . D 4 HOH A 223 526 526 HOH HOH . D 4 HOH A 224 527 527 HOH HOH . D 4 HOH A 225 528 528 HOH HOH . D 4 HOH A 226 529 529 HOH HOH . D 4 HOH A 227 530 530 HOH HOH . D 4 HOH A 228 531 531 HOH HOH . D 4 HOH A 229 533 533 HOH HOH . D 4 HOH A 230 534 534 HOH HOH . D 4 HOH A 231 535 535 HOH HOH . D 4 HOH A 232 536 536 HOH HOH . D 4 HOH A 233 537 537 HOH HOH . D 4 HOH A 234 538 538 HOH HOH . D 4 HOH A 235 539 539 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 36.79 51.959 11.5 1 51.53 ? C1 GOL 302 A 1 HETATM 2 O O1 GOL . . . C 3 37.473 53.177 11.695 1 51.85 ? O1 GOL 302 A 1 HETATM 3 C C2 GOL . . . C 3 37.62 50.732 11.887 1 52.28 ? C2 GOL 302 A 1 HETATM 4 O O2 GOL . . . C 3 37.155 50.185 13.098 1 52.55 ? O2 GOL 302 A 1 HETATM 5 C C3 GOL . . . C 3 39.124 50.987 11.949 1 52.67 ? C3 GOL 302 A 1 HETATM 6 O O3 GOL . . . C 3 39.672 50.296 13.051 1 52.58 ? O3 GOL 302 A 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #