data_3CKT # _model_server_result.job_id 1JTQZCca1W5vDJcn0rd1yw _model_server_result.datetime_utc '2024-11-21 20:19:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ckt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":2501}' # _entry.id 3CKT # _exptl.entry_id 3CKT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 603.753 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3S,4S),-3,4-Bis-[(4-carbamoyl-benzensulfonyl)-(3-methyl-but-2-enyl)-amino]-pyrrolidine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3CKT _cell.length_a 52.018 _cell.length_b 57.581 _cell.length_c 61.365 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3CKT _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C28 H37 N5 O6 S2' _chem_comp.formula_weight 603.753 _chem_comp.id YDP _chem_comp.mon_nstd_flag . _chem_comp.name (3S,4S),-3,4-Bis-[(4-carbamoyl-benzensulfonyl)-(3-methyl-but-2-enyl)-amino]-pyrrolidine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C8 YDP sing 376 n n C5 C6 YDP doub 377 n y C5 C20 YDP sing 378 n y C6 C8 YDP sing 379 n n C6 C2 YDP sing 380 n y C8 O2 YDP doub 381 n n C10 C35 YDP sing 382 n n C20 C27 YDP doub 383 n y C24 N32 YDP sing 384 n n C24 C25 YDP sing 385 n n C24 C23 YDP sing 386 n n C27 C18 YDP sing 387 n y C27 S9 YDP sing 388 n n C18 C2 YDP doub 389 n y S9 O40 YDP doub 390 n n S9 N32 YDP sing 391 n n S9 O11 YDP doub 392 n n N32 C33 YDP sing 393 n n C33 C34 YDP sing 394 n n C34 C35 YDP doub 395 n n C35 C11 YDP sing 396 n n C25 N22 YDP sing 397 n n N22 C26 YDP sing 398 n n N2 C9 YDP sing 399 n n C3 C4 YDP doub 400 n y C3 C19 YDP sing 401 n y O3 C9 YDP doub 402 n n C7 C4 YDP sing 403 n y C7 C21 YDP doub 404 n y C4 C9 YDP sing 405 n n S10 O12 YDP doub 406 n n S10 C28 YDP sing 407 n n S10 N36 YDP sing 408 n n S10 O41 YDP doub 409 n n C12 C39 YDP sing 410 n n C13 C39 YDP sing 411 n n C19 C28 YDP doub 412 n y C21 C28 YDP sing 413 n y C23 C26 YDP sing 414 n n C23 N36 YDP sing 415 n n N36 C37 YDP sing 416 n n C37 C38 YDP sing 417 n n C38 C39 YDP doub 418 n n N1 HN1 YDP sing 419 n n N1 HN1A YDP sing 420 n n C5 H5 YDP sing 421 n n C10 H10 YDP sing 422 n n C10 H10A YDP sing 423 n n C10 H10B YDP sing 424 n n C20 H20 YDP sing 425 n n C24 H24 YDP sing 426 n n C18 H18 YDP sing 427 n n C2 H2 YDP sing 428 n n C33 H33 YDP sing 429 n n C33 H33A YDP sing 430 n n C34 H34 YDP sing 431 n n C11 H11 YDP sing 432 n n C11 H11A YDP sing 433 n n C11 H11B YDP sing 434 n n C25 H25 YDP sing 435 n n C25 H25A YDP sing 436 n n N22 HN22 YDP sing 437 n n N2 HN2 YDP sing 438 n n N2 HN2A YDP sing 439 n n C3 H3 YDP sing 440 n n C7 H7 YDP sing 441 n n C12 H12 YDP sing 442 n n C12 H12A YDP sing 443 n n C12 H12B YDP sing 444 n n C13 H13 YDP sing 445 n n C13 H13A YDP sing 446 n n C13 H13B YDP sing 447 n n C19 H19 YDP sing 448 n n C21 H21 YDP sing 449 n n C23 H23 YDP sing 450 n n C26 H26 YDP sing 451 n n C26 H26A YDP sing 452 n n C37 H37 YDP sing 453 n n C37 H37A YDP sing 454 n n C38 H38 YDP sing 455 n n # _atom_sites.entry_id 3CKT _atom_sites.fract_transf_matrix[1][1] 0.019224 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017367 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016296 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CL A 1 2602 2602 CL CL . D 3 YDP A 1 2501 2501 YDP LIG . E 2 CL B 1 2601 2601 CL CL . F 4 HOH A 1 3001 3001 HOH HOH . F 4 HOH A 2 3004 3004 HOH HOH . F 4 HOH A 3 3005 3005 HOH HOH . F 4 HOH A 4 3007 3007 HOH HOH . F 4 HOH A 5 3008 3008 HOH HOH . F 4 HOH A 6 3010 3010 HOH HOH . F 4 HOH A 7 3012 3012 HOH HOH . F 4 HOH A 8 3013 3013 HOH HOH . F 4 HOH A 9 3014 3014 HOH HOH . F 4 HOH A 10 3015 3015 HOH HOH . F 4 HOH A 11 3018 3018 HOH HOH . F 4 HOH A 12 3019 3019 HOH HOH . F 4 HOH A 13 3020 3020 HOH HOH . F 4 HOH A 14 3023 3023 HOH HOH . F 4 HOH A 15 3025 3025 HOH HOH . F 4 HOH A 16 3032 3032 HOH HOH . F 4 HOH A 17 3039 3039 HOH HOH . F 4 HOH A 18 3041 3041 HOH HOH . F 4 HOH A 19 3042 3042 HOH HOH . F 4 HOH A 20 3045 3045 HOH HOH . F 4 HOH A 21 3046 3046 HOH HOH . F 4 HOH A 22 3048 3048 HOH HOH . F 4 HOH A 23 3050 3050 HOH HOH . F 4 HOH A 24 3052 3052 HOH HOH . F 4 HOH A 25 3056 3056 HOH HOH . F 4 HOH A 26 3058 3058 HOH HOH . F 4 HOH A 27 3060 3060 HOH HOH . F 4 HOH A 28 3062 3062 HOH HOH . F 4 HOH A 29 3063 3063 HOH HOH . F 4 HOH A 30 3064 3064 HOH HOH . F 4 HOH A 31 3065 3065 HOH HOH . F 4 HOH A 32 3070 3070 HOH HOH . F 4 HOH A 33 3075 3075 HOH HOH . F 4 HOH A 34 3076 3076 HOH HOH . F 4 HOH A 35 3077 3077 HOH HOH . F 4 HOH A 36 3078 3078 HOH HOH . F 4 HOH A 37 3080 3080 HOH HOH . F 4 HOH A 38 3082 3082 HOH HOH . F 4 HOH A 39 3089 3089 HOH HOH . F 4 HOH A 40 3091 3091 HOH HOH . F 4 HOH A 41 3093 3093 HOH HOH . F 4 HOH A 42 3094 3094 HOH HOH . F 4 HOH A 43 3096 3096 HOH HOH . F 4 HOH A 44 3097 3097 HOH HOH . F 4 HOH A 45 3099 3099 HOH HOH . F 4 HOH A 46 3102 3102 HOH HOH . F 4 HOH A 47 3103 3103 HOH HOH . F 4 HOH A 48 3108 3108 HOH HOH . F 4 HOH A 49 3109 3109 HOH HOH . F 4 HOH A 50 3111 3111 HOH HOH . F 4 HOH A 51 3112 3112 HOH HOH . F 4 HOH A 52 3113 3113 HOH HOH . F 4 HOH A 53 3114 3114 HOH HOH . F 4 HOH A 54 3116 3116 HOH HOH . F 4 HOH A 55 3117 3117 HOH HOH . F 4 HOH A 56 3118 3118 HOH HOH . F 4 HOH A 57 3119 3119 HOH HOH . F 4 HOH A 58 3120 3120 HOH HOH . G 4 HOH B 1 3002 3002 HOH HOH . G 4 HOH B 2 3003 3003 HOH HOH . G 4 HOH B 3 3006 3006 HOH HOH . G 4 HOH B 4 3009 3009 HOH HOH . G 4 HOH B 5 3011 3011 HOH HOH . G 4 HOH B 6 3016 3016 HOH HOH . G 4 HOH B 7 3017 3017 HOH HOH . G 4 HOH B 8 3021 3021 HOH HOH . G 4 HOH B 9 3022 3022 HOH HOH . G 4 HOH B 10 3024 3024 HOH HOH . G 4 HOH B 11 3026 3026 HOH HOH . G 4 HOH B 12 3027 3027 HOH HOH . G 4 HOH B 13 3028 3028 HOH HOH . G 4 HOH B 14 3029 3029 HOH HOH . G 4 HOH B 15 3030 3030 HOH HOH . G 4 HOH B 16 3031 3031 HOH HOH . G 4 HOH B 17 3033 3033 HOH HOH . G 4 HOH B 18 3034 3034 HOH HOH . G 4 HOH B 19 3035 3035 HOH HOH . G 4 HOH B 20 3036 3036 HOH HOH . G 4 HOH B 21 3037 3037 HOH HOH . G 4 HOH B 22 3038 3038 HOH HOH . G 4 HOH B 23 3040 3040 HOH HOH . G 4 HOH B 24 3043 3043 HOH HOH . G 4 HOH B 25 3044 3044 HOH HOH . G 4 HOH B 26 3047 3047 HOH HOH . G 4 HOH B 27 3049 3049 HOH HOH . G 4 HOH B 28 3051 3051 HOH HOH . G 4 HOH B 29 3053 3053 HOH HOH . G 4 HOH B 30 3054 3054 HOH HOH . G 4 HOH B 31 3055 3055 HOH HOH . G 4 HOH B 32 3057 3057 HOH HOH . G 4 HOH B 33 3059 3059 HOH HOH . G 4 HOH B 34 3061 3061 HOH HOH . G 4 HOH B 35 3066 3066 HOH HOH . G 4 HOH B 36 3067 3067 HOH HOH . G 4 HOH B 37 3068 3068 HOH HOH . G 4 HOH B 38 3069 3069 HOH HOH . G 4 HOH B 39 3071 3071 HOH HOH . G 4 HOH B 40 3072 3072 HOH HOH . G 4 HOH B 41 3073 3073 HOH HOH . G 4 HOH B 42 3074 3074 HOH HOH . G 4 HOH B 43 3079 3079 HOH HOH . G 4 HOH B 44 3081 3081 HOH HOH . G 4 HOH B 45 3083 3083 HOH HOH . G 4 HOH B 46 3084 3084 HOH HOH . G 4 HOH B 47 3085 3085 HOH HOH . G 4 HOH B 48 3086 3086 HOH HOH . G 4 HOH B 49 3087 3087 HOH HOH . G 4 HOH B 50 3088 3088 HOH HOH . G 4 HOH B 51 3090 3090 HOH HOH . G 4 HOH B 52 3092 3092 HOH HOH . G 4 HOH B 53 3095 3095 HOH HOH . G 4 HOH B 54 3098 3098 HOH HOH . G 4 HOH B 55 3100 3100 HOH HOH . G 4 HOH B 56 3101 3101 HOH HOH . G 4 HOH B 57 3104 3104 HOH HOH . G 4 HOH B 58 3105 3105 HOH HOH . G 4 HOH B 59 3106 3106 HOH HOH . G 4 HOH B 60 3107 3107 HOH HOH . G 4 HOH B 61 3110 3110 HOH HOH . G 4 HOH B 62 3115 3115 HOH HOH . G 4 HOH B 63 3121 3121 HOH HOH . G 4 HOH B 64 3122 3122 HOH HOH . G 4 HOH B 65 3123 3123 HOH HOH . G 4 HOH B 66 3124 3124 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 YDP . . . D 3 9.712 8.597 -18.168 1 39.46 ? N1 YDP 2501 A 1 HETATM 2 C C5 YDP . . . D 3 8.907 6.776 -16.083 1 27.3 ? C5 YDP 2501 A 1 HETATM 3 C C6 YDP . . . D 3 9.743 6.341 -17.12 1 32.65 ? C6 YDP 2501 A 1 HETATM 4 C C8 YDP . . . D 3 10.138 7.311 -18.217 1 44.54 ? C8 YDP 2501 A 1 HETATM 5 C C10 YDP . . . D 3 8.439 -1.268 -11.195 1 35.9 ? C10 YDP 2501 A 1 HETATM 6 C C20 YDP . . . D 3 8.548 5.893 -15.069 1 27.81 ? C20 YDP 2501 A 1 HETATM 7 C C24 YDP . . . D 3 6.533 2.115 -15.078 1 19.75 ? C24 YDP 2501 A 1 HETATM 8 C C27 YDP . . . D 3 9.002 4.572 -15.076 1 23.26 ? C27 YDP 2501 A 1 HETATM 9 C C18 YDP . . . D 3 9.816 4.126 -16.118 1 24.89 ? C18 YDP 2501 A 1 HETATM 10 C C2 YDP . . . D 3 10.163 5.013 -17.154 1 33.56 ? C2 YDP 2501 A 1 HETATM 11 S S9 YDP . . . D 3 8.51 3.504 -13.77 1 33.15 ? S9 YDP 2501 A 1 HETATM 12 O O40 YDP . . . D 3 9.769 3.149 -13.095 1 48.24 ? O40 YDP 2501 A 1 HETATM 13 N N32 YDP . . . D 3 7.891 2.086 -14.514 1 36.08 ? N32 YDP 2501 A 1 HETATM 14 C C33 YDP . . . D 3 8.755 0.885 -14.484 1 38.38 ? C33 YDP 2501 A 1 HETATM 15 C C34 YDP . . . D 3 8.859 0.318 -13.072 1 37.35 ? C34 YDP 2501 A 1 HETATM 16 C C35 YDP . . . D 3 8.32 -0.835 -12.639 1 43.34 ? C35 YDP 2501 A 1 HETATM 17 C C11 YDP . . . D 3 7.538 -1.797 -13.504 1 68.89 ? C11 YDP 2501 A 1 HETATM 18 C C25 YDP . . . D 3 6.341 1.48 -16.457 1 19.62 ? C25 YDP 2501 A 1 HETATM 19 N N22 YDP . . . D 3 5.594 0.223 -16.339 1 21.23 ? N22 YDP 2501 A 1 HETATM 20 O O11 YDP . . . D 3 7.486 4.106 -12.936 1 34.27 ? O11 YDP 2501 A 1 HETATM 21 O O2 YDP . . . D 3 10.873 6.886 -19.088 1 43.57 ? O2 YDP 2501 A 1 HETATM 22 N N2 YDP . . . D 3 0.377 -3.081 -9.766 1 28.53 ? N2 YDP 2501 A 1 HETATM 23 C C3 YDP . . . D 3 2.396 -0.989 -10.345 1 30.8 ? C3 YDP 2501 A 1 HETATM 24 O O3 YDP . . . D 3 -0.047 -3.03 -11.975 1 25.84 ? O3 YDP 2501 A 1 HETATM 25 C C7 YDP . . . D 3 1.186 -0.535 -12.388 1 22.46 ? C7 YDP 2501 A 1 HETATM 26 C C4 YDP . . . D 3 1.383 -1.326 -11.262 1 27.16 ? C4 YDP 2501 A 1 HETATM 27 C C9 YDP . . . D 3 0.51 -2.546 -11.008 1 31.76 ? C9 YDP 2501 A 1 HETATM 28 S S10 YDP . . . D 3 4.199 2.193 -12.028 1 28.74 ? S10 YDP 2501 A 1 HETATM 29 C C12 YDP . . . D 3 3.333 4.267 -17.245 1 28.27 ? C12 YDP 2501 A 1 HETATM 30 C C13 YDP . . . D 3 4.005 6.46 -16.156 1 27.53 ? C13 YDP 2501 A 1 HETATM 31 O O12 YDP . . . D 3 3.485 3.396 -11.636 1 46.49 ? O12 YDP 2501 A 1 HETATM 32 C C19 YDP . . . D 3 3.272 0.061 -10.626 1 28.08 ? C19 YDP 2501 A 1 HETATM 33 C C21 YDP . . . D 3 2.053 0.533 -12.668 1 27.41 ? C21 YDP 2501 A 1 HETATM 34 C C23 YDP . . . D 3 5.533 1.352 -14.162 1 25.21 ? C23 YDP 2501 A 1 HETATM 35 C C26 YDP . . . D 3 5.05 0.12 -14.966 1 22.75 ? C26 YDP 2501 A 1 HETATM 36 C C28 YDP . . . D 3 3.078 0.834 -11.778 1 29.82 ? C28 YDP 2501 A 1 HETATM 37 N N36 YDP . . . D 3 4.385 2.157 -13.699 1 36.06 ? N36 YDP 2501 A 1 HETATM 38 C C37 YDP . . . D 3 3.463 2.893 -14.573 1 38.45 ? C37 YDP 2501 A 1 HETATM 39 C C38 YDP . . . D 3 3.761 4.372 -14.777 1 32.79 ? C38 YDP 2501 A 1 HETATM 40 C C39 YDP . . . D 3 3.71 4.993 -15.971 1 29.29 ? C39 YDP 2501 A 1 HETATM 41 O O41 YDP . . . D 3 5.436 1.798 -11.376 1 28.82 ? O41 YDP 2501 A 1 # _model_server_stats.io_time_ms 44 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 537 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 41 #