data_3CKX # _model_server_result.job_id hDG5hYaAUnDAjyBWf6LV-A _model_server_result.datetime_utc '2024-11-06 02:57:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ckx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":305}' # _entry.id 3CKX # _exptl.entry_id 3CKX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 466.531 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description STAUROSPORINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 114.69 _cell.angle_gamma 90 _cell.entry_id 3CKX _cell.length_a 47.369 _cell.length_b 54.766 _cell.length_c 61.136 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3CKX _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ASN 162 A ASN 162 1_555 A N TPO 163 A TPO 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale2 A C TPO 163 A TPO 163 1_555 A N PHE 164 A PHE 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? # _chem_comp.formula 'C28 H26 N4 O3' _chem_comp.formula_weight 466.531 _chem_comp.id STU _chem_comp.mon_nstd_flag . _chem_comp.name STAUROSPORINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O4 C25 STU sing 290 n n O4 C21 STU sing 291 n n C25 C24 STU sing 292 n n C25 N3 STU sing 293 n n C25 H25 STU sing 294 n n C24 C23 STU sing 295 n n C24 H241 STU sing 296 n n C24 H242 STU sing 297 n n C23 C22 STU sing 298 n n C23 N4 STU sing 299 n n C23 H23 STU sing 300 n n C22 C21 STU sing 301 n n C22 O6 STU sing 302 n n C22 H22 STU sing 303 n n C21 C26 STU sing 304 n n C21 N2 STU sing 305 n n C26 H261 STU sing 306 n n C26 H262 STU sing 307 n n C26 H263 STU sing 308 n n N2 C18 STU sing 309 n y N2 C17 STU sing 310 n y C18 C19 STU doub 311 n y C18 C11 STU sing 312 n y C19 C6 STU sing 313 n y C19 N3 STU sing 314 n y C6 C7 STU doub 315 n y C6 C5 STU sing 316 n y C7 C10 STU sing 317 n y C7 C8 STU sing 318 n n C10 C11 STU doub 319 n y C10 C9 STU sing 320 n n C11 C12 STU sing 321 n y C12 C17 STU doub 322 n y C12 C13 STU sing 323 n y C17 C16 STU sing 324 n y C16 C15 STU doub 325 n y C16 H16 STU sing 326 n n C15 C14 STU sing 327 n y C15 H15 STU sing 328 n n C14 C13 STU doub 329 n y C14 H14 STU sing 330 n n C13 H13 STU sing 331 n n C9 N1 STU sing 332 n n C9 H91 STU sing 333 n n C9 H92 STU sing 334 n n N1 C8 STU sing 335 n n N1 HN1 STU sing 336 n n C8 O5 STU doub 337 n n C5 C20 STU doub 338 n y C5 C4 STU sing 339 n y C20 C1 STU sing 340 n y C20 N3 STU sing 341 n y C1 C2 STU doub 342 n y C1 H1 STU sing 343 n n C2 C3 STU sing 344 n y C2 H2 STU sing 345 n n C3 C4 STU doub 346 n y C3 H3 STU sing 347 n n C4 H4 STU sing 348 n n O6 C27 STU sing 349 n n C27 H271 STU sing 350 n n C27 H272 STU sing 351 n n C27 H273 STU sing 352 n n N4 C28 STU sing 353 n n N4 HN4 STU sing 354 n n C28 H281 STU sing 355 n n C28 H282 STU sing 356 n n C28 H283 STU sing 357 n n # _atom_sites.entry_id 3CKX _atom_sites.fract_transf_matrix[1][1] 0.021111 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.009705 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01826 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018003 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 STU A 1 305 301 STU STU . C 3 HOH A 1 401 401 HOH HOH . C 3 HOH A 2 402 3 HOH HOH . C 3 HOH A 3 403 4 HOH HOH . C 3 HOH A 4 404 5 HOH HOH . C 3 HOH A 5 405 6 HOH HOH . C 3 HOH A 6 406 7 HOH HOH . C 3 HOH A 7 407 8 HOH HOH . C 3 HOH A 8 408 9 HOH HOH . C 3 HOH A 9 409 10 HOH HOH . C 3 HOH A 10 410 11 HOH HOH . C 3 HOH A 11 411 12 HOH HOH . C 3 HOH A 12 412 13 HOH HOH . C 3 HOH A 13 413 14 HOH HOH . C 3 HOH A 14 414 15 HOH HOH . C 3 HOH A 15 415 16 HOH HOH . C 3 HOH A 16 416 17 HOH HOH . C 3 HOH A 17 417 18 HOH HOH . C 3 HOH A 18 418 19 HOH HOH . C 3 HOH A 19 419 20 HOH HOH . C 3 HOH A 20 420 21 HOH HOH . C 3 HOH A 21 421 22 HOH HOH . C 3 HOH A 22 422 23 HOH HOH . C 3 HOH A 23 423 24 HOH HOH . C 3 HOH A 24 424 25 HOH HOH . C 3 HOH A 25 425 26 HOH HOH . C 3 HOH A 26 426 27 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O4 STU . . . B 2 -14.049 0.647 10.08 1 50.05 ? O4 STU 305 A 1 HETATM 2 C C25 STU . . . B 2 -14.622 0.732 11.356 1 47.61 ? C25 STU 305 A 1 HETATM 3 C C24 STU . . . B 2 -13.83 1.581 12.345 1 47.96 ? C24 STU 305 A 1 HETATM 4 C C23 STU . . . B 2 -12.593 2.206 11.656 1 42.83 ? C23 STU 305 A 1 HETATM 5 C C22 STU . . . B 2 -11.795 1.056 11.019 1 41.82 ? C22 STU 305 A 1 HETATM 6 C C21 STU . . . B 2 -12.677 0.345 9.999 1 48.15 ? C21 STU 305 A 1 HETATM 7 C C26 STU . . . B 2 -12.223 0.908 8.644 1 45.91 ? C26 STU 305 A 1 HETATM 8 N N2 STU . . . B 2 -12.398 -1.09 10.049 1 50.15 ? N2 STU 305 A 1 HETATM 9 C C18 STU . . . B 2 -13.162 -1.972 10.808 1 49.19 ? C18 STU 305 A 1 HETATM 10 C C19 STU . . . B 2 -14.293 -1.74 11.615 1 50.06 ? C19 STU 305 A 1 HETATM 11 C C6 STU . . . B 2 -14.9 -2.81 12.286 1 48.93 ? C6 STU 305 A 1 HETATM 12 C C7 STU . . . B 2 -14.378 -4.115 12.145 1 48.39 ? C7 STU 305 A 1 HETATM 13 C C10 STU . . . B 2 -13.257 -4.327 11.351 1 48.79 ? C10 STU 305 A 1 HETATM 14 C C11 STU . . . B 2 -12.645 -3.272 10.683 1 50.63 ? C11 STU 305 A 1 HETATM 15 C C12 STU . . . B 2 -11.489 -3.159 9.795 1 49.64 ? C12 STU 305 A 1 HETATM 16 C C17 STU . . . B 2 -11.379 -1.795 9.437 1 49.54 ? C17 STU 305 A 1 HETATM 17 C C16 STU . . . B 2 -10.35 -1.382 8.584 1 49.31 ? C16 STU 305 A 1 HETATM 18 C C15 STU . . . B 2 -9.473 -2.35 8.12 1 50.13 ? C15 STU 305 A 1 HETATM 19 C C14 STU . . . B 2 -9.591 -3.684 8.476 1 48.53 ? C14 STU 305 A 1 HETATM 20 C C13 STU . . . B 2 -10.595 -4.119 9.32 1 47.73 ? C13 STU 305 A 1 HETATM 21 C C9 STU . . . B 2 -12.952 -5.795 11.419 1 49.22 ? C9 STU 305 A 1 HETATM 22 N N1 STU . . . B 2 -13.971 -6.371 12.295 1 49.82 ? N1 STU 305 A 1 HETATM 23 C C8 STU . . . B 2 -14.79 -5.398 12.712 1 47.95 ? C8 STU 305 A 1 HETATM 24 O O5 STU . . . B 2 -15.737 -5.562 13.451 1 48.18 ? O5 STU 305 A 1 HETATM 25 C C5 STU . . . B 2 -16.021 -2.244 13.016 1 49.9 ? C5 STU 305 A 1 HETATM 26 C C20 STU . . . B 2 -16.027 -0.848 12.741 1 48.91 ? C20 STU 305 A 1 HETATM 27 C C1 STU . . . B 2 -17.007 -0.029 13.312 1 49.89 ? C1 STU 305 A 1 HETATM 28 C C2 STU . . . B 2 -17.949 -0.636 14.137 1 48.69 ? C2 STU 305 A 1 HETATM 29 C C3 STU . . . B 2 -17.936 -1.998 14.401 1 48.9 ? C3 STU 305 A 1 HETATM 30 C C4 STU . . . B 2 -16.978 -2.837 13.848 1 49.1 ? C4 STU 305 A 1 HETATM 31 N N3 STU . . . B 2 -14.956 -0.586 11.886 1 48.21 ? N3 STU 305 A 1 HETATM 32 O O6 STU . . . B 2 -11.453 0.134 12.063 1 37.17 ? O6 STU 305 A 1 HETATM 33 C C27 STU . . . B 2 -10.032 0.087 12.2 1 38.19 ? C27 STU 305 A 1 HETATM 34 N N4 STU . . . B 2 -11.698 2.961 12.565 1 42.43 ? N4 STU 305 A 1 HETATM 35 C C28 STU . . . B 2 -12.33 3.177 13.88 1 33.96 ? C28 STU 305 A 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 244 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 35 #