data_3CL1
#
_model_server_result.job_id            5xednXjq_P1BTuPQfI0how 
_model_server_result.datetime_utc      '2024-11-23 01:39:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3cl1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":402}' 
#
_entry.id    3CL1 
#
_exptl.entry_id    3CL1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              345.205 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CYCLIC GUANOSINE MONOPHOSPHATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          99.11 
_cell.angle_gamma         90 
_cell.entry_id            3CL1 
_cell.length_a            34.202 
_cell.length_b            79.594 
_cell.length_c            49.984 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3CL1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 software_defined_assembly 1 
? dimeric 2 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,K 1 1 
B,G,H,I,J,L 1 2 
A,B,C,D,E,F,G,H,I,J,K,L 2 1 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_655 -x+1,y+1/2,-z -1 0 0 0 1 0 0 0 -1 34.202 39.797 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O ALA 35 A ALA 250 1_555 E K K . A K 356 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.659 ? 
metalc ? metalc2 A OD2 ASP 111 A ASP 326 1_555 E K K . A K 356 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.648 ? 
metalc ? metalc3 G K K . B K 2 1_555 L O HOH . B HOH 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.733 ? 
metalc ? metalc4 G K K . B K 2 1_555 B O ALA 17 B ALA 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.658 ? 
metalc ? metalc5 H K K . B K 3 1_555 B O ALA 68 B ALA 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.881 ? 
metalc ? metalc6 H K K . B K 3 1_555 B N THR 95 B THR 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.85 ? 
#
_chem_comp.formula           'C10 H12 N5 O7 P' 
_chem_comp.formula_weight    345.205 
_chem_comp.id                PCG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CYCLIC GUANOSINE MONOPHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A PCG sing 237 n n 
PA O2A PCG doub 238 n n 
PA O5' PCG sing 239 n n 
PA O3' PCG sing 240 n n 
O1A HO1A PCG sing 241 n n 
O5' C5' PCG sing 242 n n 
C5' C4' PCG sing 243 n n 
C5' "H5'1" PCG sing 244 n n 
C5' "H5'2" PCG sing 245 n n 
C4' O4' PCG sing 246 n n 
C4' C3' PCG sing 247 n n 
C4' H4' PCG sing 248 n n 
O4' C1' PCG sing 249 n n 
C3' O3' PCG sing 250 n n 
C3' C2' PCG sing 251 n n 
C3' H3' PCG sing 252 n n 
C2' O2' PCG sing 253 n n 
C2' C1' PCG sing 254 n n 
C2' H2' PCG sing 255 n n 
O2' HO2' PCG sing 256 n n 
C1' N9 PCG sing 257 n n 
C1' H1' PCG sing 258 n n 
N9 C8 PCG sing 259 n y 
N9 C4 PCG sing 260 n y 
C8 N7 PCG doub 261 n y 
C8 H8 PCG sing 262 n n 
N7 C5 PCG sing 263 n y 
C5 C6 PCG sing 264 n n 
C5 C4 PCG doub 265 n y 
C6 O6 PCG doub 266 n n 
C6 N1 PCG sing 267 n n 
N1 C2 PCG sing 268 n n 
N1 HN1 PCG sing 269 n n 
C2 N2 PCG sing 270 n n 
C2 N3 PCG doub 271 n n 
N2 HN21 PCG sing 272 n n 
N2 HN22 PCG sing 273 n n 
N3 C4 PCG sing 274 n n 
#
_atom_sites.entry_id                     3CL1 
_atom_sites.fract_transf_matrix[1][1]    0.029238 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004688 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012564 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.020262 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 CL A 1 1 1 CL CL . 
D 2 CL A 1 2 2 CL CL . 
E 3 K A 1 356 356 K K . 
F 4 PCG A 1 402 402 PCG PCG . 
G 3 K B 1 2 2 K K . 
H 3 K B 1 3 3 K K . 
I 4 PCG B 1 402 402 PCG PCG . 
J 5 POL B 1 200 200 POL POL . 
K 6 HOH A 1 16 16 HOH HOH . 
K 6 HOH A 2 56 56 HOH HOH . 
K 6 HOH A 3 403 403 HOH HOH . 
K 6 HOH A 4 404 404 HOH HOH . 
K 6 HOH A 5 405 405 HOH HOH . 
K 6 HOH A 6 406 406 HOH HOH . 
K 6 HOH A 7 407 407 HOH HOH . 
K 6 HOH A 8 408 408 HOH HOH . 
K 6 HOH A 9 409 409 HOH HOH . 
K 6 HOH A 10 410 410 HOH HOH . 
K 6 HOH A 11 411 411 HOH HOH . 
K 6 HOH A 12 412 412 HOH HOH . 
K 6 HOH A 13 413 413 HOH HOH . 
K 6 HOH A 14 414 414 HOH HOH . 
K 6 HOH A 15 415 415 HOH HOH . 
K 6 HOH A 16 416 416 HOH HOH . 
K 6 HOH A 17 417 417 HOH HOH . 
K 6 HOH A 18 418 418 HOH HOH . 
K 6 HOH A 19 420 420 HOH HOH . 
K 6 HOH A 20 421 421 HOH HOH . 
K 6 HOH A 21 422 422 HOH HOH . 
K 6 HOH A 22 423 423 HOH HOH . 
K 6 HOH A 23 424 424 HOH HOH . 
K 6 HOH A 24 425 425 HOH HOH . 
K 6 HOH A 25 426 426 HOH HOH . 
K 6 HOH A 26 427 427 HOH HOH . 
K 6 HOH A 27 428 428 HOH HOH . 
K 6 HOH A 28 429 429 HOH HOH . 
K 6 HOH A 29 431 431 HOH HOH . 
K 6 HOH A 30 432 432 HOH HOH . 
K 6 HOH A 31 433 433 HOH HOH . 
K 6 HOH A 32 434 434 HOH HOH . 
K 6 HOH A 33 435 435 HOH HOH . 
K 6 HOH A 34 436 436 HOH HOH . 
K 6 HOH A 35 437 437 HOH HOH . 
K 6 HOH A 36 438 438 HOH HOH . 
K 6 HOH A 37 439 439 HOH HOH . 
K 6 HOH A 38 440 440 HOH HOH . 
K 6 HOH A 39 441 441 HOH HOH . 
K 6 HOH A 40 442 442 HOH HOH . 
K 6 HOH A 41 443 443 HOH HOH . 
K 6 HOH A 42 444 444 HOH HOH . 
K 6 HOH A 43 445 445 HOH HOH . 
K 6 HOH A 44 446 446 HOH HOH . 
K 6 HOH A 45 447 447 HOH HOH . 
K 6 HOH A 46 448 448 HOH HOH . 
K 6 HOH A 47 449 449 HOH HOH . 
K 6 HOH A 48 450 450 HOH HOH . 
K 6 HOH A 49 451 451 HOH HOH . 
K 6 HOH A 50 452 452 HOH HOH . 
K 6 HOH A 51 453 453 HOH HOH . 
K 6 HOH A 52 454 454 HOH HOH . 
K 6 HOH A 53 455 455 HOH HOH . 
K 6 HOH A 54 456 456 HOH HOH . 
K 6 HOH A 55 457 457 HOH HOH . 
K 6 HOH A 56 458 458 HOH HOH . 
K 6 HOH A 57 459 459 HOH HOH . 
K 6 HOH A 58 460 460 HOH HOH . 
K 6 HOH A 59 461 461 HOH HOH . 
K 6 HOH A 60 462 462 HOH HOH . 
K 6 HOH A 61 463 463 HOH HOH . 
K 6 HOH A 62 464 464 HOH HOH . 
L 6 HOH B 1 4 4 HOH HOH . 
L 6 HOH B 2 6 6 HOH HOH . 
L 6 HOH B 3 8 8 HOH HOH . 
L 6 HOH B 4 10 10 HOH HOH . 
L 6 HOH B 5 12 12 HOH HOH . 
L 6 HOH B 6 19 19 HOH HOH . 
L 6 HOH B 7 23 23 HOH HOH . 
L 6 HOH B 8 25 25 HOH HOH . 
L 6 HOH B 9 26 26 HOH HOH . 
L 6 HOH B 10 27 27 HOH HOH . 
L 6 HOH B 11 30 30 HOH HOH . 
L 6 HOH B 12 31 31 HOH HOH . 
L 6 HOH B 13 35 35 HOH HOH . 
L 6 HOH B 14 37 37 HOH HOH . 
L 6 HOH B 15 38 38 HOH HOH . 
L 6 HOH B 16 40 40 HOH HOH . 
L 6 HOH B 17 41 41 HOH HOH . 
L 6 HOH B 18 48 48 HOH HOH . 
L 6 HOH B 19 49 49 HOH HOH . 
L 6 HOH B 20 53 53 HOH HOH . 
L 6 HOH B 21 57 57 HOH HOH . 
L 6 HOH B 22 59 59 HOH HOH . 
L 6 HOH B 23 61 61 HOH HOH . 
L 6 HOH B 24 62 62 HOH HOH . 
L 6 HOH B 25 63 63 HOH HOH . 
L 6 HOH B 26 64 64 HOH HOH . 
L 6 HOH B 27 66 66 HOH HOH . 
L 6 HOH B 28 68 68 HOH HOH . 
L 6 HOH B 29 74 74 HOH HOH . 
L 6 HOH B 30 77 77 HOH HOH . 
L 6 HOH B 31 78 78 HOH HOH . 
L 6 HOH B 32 80 80 HOH HOH . 
L 6 HOH B 33 81 81 HOH HOH . 
L 6 HOH B 34 82 82 HOH HOH . 
L 6 HOH B 35 83 83 HOH HOH . 
L 6 HOH B 36 85 85 HOH HOH . 
L 6 HOH B 37 92 92 HOH HOH . 
L 6 HOH B 38 94 94 HOH HOH . 
L 6 HOH B 39 95 95 HOH HOH . 
L 6 HOH B 40 99 99 HOH HOH . 
L 6 HOH B 41 100 100 HOH HOH . 
L 6 HOH B 42 102 102 HOH HOH . 
L 6 HOH B 43 107 107 HOH HOH . 
L 6 HOH B 44 108 108 HOH HOH . 
L 6 HOH B 45 109 109 HOH HOH . 
L 6 HOH B 46 110 110 HOH HOH . 
L 6 HOH B 47 419 419 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA PCG . . . I 4 23.51 38.78 12.829 1 16.05 ? PA PCG 402 B 1 
HETATM 2 O O1A PCG . . . I 4 24.001 37.425 13.261 1 16.96 ? O1A PCG 402 B 1 
HETATM 3 O O2A PCG . . . I 4 23.562 39.947 13.783 1 17.44 ? O2A PCG 402 B 1 
HETATM 4 O O5' PCG . . . I 4 24.323 39.204 11.485 1 17.59 ? O5' PCG 402 B 1 
HETATM 5 C C5' PCG . . . I 4 23.978 38.724 10.171 1 17.12 ? C5' PCG 402 B 1 
HETATM 6 C C4' PCG . . . I 4 22.484 38.966 10.002 1 17.4 ? C4' PCG 402 B 1 
HETATM 7 O O4' PCG . . . I 4 21.882 38.575 8.762 1 16.93 ? O4' PCG 402 B 1 
HETATM 8 C C3' PCG . . . I 4 21.746 38.126 11.022 1 17.61 ? C3' PCG 402 B 1 
HETATM 9 O O3' PCG . . . I 4 21.992 38.63 12.329 1 17.66 ? O3' PCG 402 B 1 
HETATM 10 C C2' PCG . . . I 4 20.32 38.23 10.535 1 17.26 ? C2' PCG 402 B 1 
HETATM 11 O O2' PCG . . . I 4 19.658 39.348 11.133 1 19.53 ? O2' PCG 402 B 1 
HETATM 12 C C1' PCG . . . I 4 20.475 38.443 9.026 1 15.75 ? C1' PCG 402 B 1 
HETATM 13 N N9 PCG . . . I 4 19.851 37.279 8.338 1 14.29 ? N9 PCG 402 B 1 
HETATM 14 C C8 PCG . . . I 4 18.815 37.333 7.472 1 12.44 ? C8 PCG 402 B 1 
HETATM 15 N N7 PCG . . . I 4 18.461 36.107 7.033 1 11.06 ? N7 PCG 402 B 1 
HETATM 16 C C5 PCG . . . I 4 19.288 35.229 7.642 1 13.32 ? C5 PCG 402 B 1 
HETATM 17 C C6 PCG . . . I 4 19.477 33.76 7.651 1 12.47 ? C6 PCG 402 B 1 
HETATM 18 O O6 PCG . . . I 4 18.763 33.015 6.96 1 13.82 ? O6 PCG 402 B 1 
HETATM 19 N N1 PCG . . . I 4 20.436 33.244 8.425 1 13.78 ? N1 PCG 402 B 1 
HETATM 20 C C2 PCG . . . I 4 21.252 33.996 9.198 1 14.17 ? C2 PCG 402 B 1 
HETATM 21 N N2 PCG . . . I 4 22.211 33.371 9.944 1 13.67 ? N2 PCG 402 B 1 
HETATM 22 N N3 PCG . . . I 4 21.143 35.348 9.243 1 12.92 ? N3 PCG 402 B 1 
HETATM 23 C C4 PCG . . . I 4 20.196 36.001 8.51 1 13.87 ? C4 PCG 402 B 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           264 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           23 
#