data_3CL7
#
_model_server_result.job_id            Ux9d4TvNjh55GZNRF17QGg 
_model_server_result.datetime_utc      '2024-11-28 02:07:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3cl7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":401}' 
#
_entry.id    3CL7 
#
_exptl.entry_id    3CL7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              100.076 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            imidazolidine-2,4-dione 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3CL7 
_cell.length_a            98.135 
_cell.length_b            98.135 
_cell.length_c            62.103 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3CL7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        75 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 4' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA tetrameric 4 author_and_software_defined_assembly 1 
PISA tetrameric 4 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1,2,3,4 
B,D,F 2 1,5,6,7 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 
3 'crystal symmetry operation' 3_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 
4 'crystal symmetry operation' 4_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 
5 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 98.135 98.135 0 
6 'crystal symmetry operation' 3_655 -y+1,x,z 0 -1 0 1 0 0 0 0 1 98.135 0 0 
7 'crystal symmetry operation' 4_565 y,-x+1,z 0 1 0 -1 0 0 0 0 1 0 98.135 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C3 H4 N2 O2' 
_chem_comp.formula_weight    100.076 
_chem_comp.id                HYN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              imidazolidine-2,4-dione 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     Hydantoin 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O C HYN doub 152 n n 
C C1 HYN sing 153 n n 
C N1 HYN sing 154 n n 
C1 N HYN sing 155 n n 
N C2 HYN sing 156 n n 
N1 C2 HYN sing 157 n n 
C2 O1 HYN doub 158 n n 
C1 H1 HYN sing 159 n n 
C1 H1A HYN sing 160 n n 
N HN HYN sing 161 n n 
N1 HN1 HYN sing 162 n n 
#
_atom_sites.entry_id                     3CL7 
_atom_sites.fract_transf_matrix[1][1]    0.01019 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01019 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016102 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HYN A 1 401 401 HYN HYN . 
D 2 HYN B 1 401 401 HYN HYN . 
E 3 HOH A 1 402 402 HOH HOH . 
E 3 HOH A 2 403 403 HOH HOH . 
E 3 HOH A 3 404 404 HOH HOH . 
E 3 HOH A 4 405 405 HOH HOH . 
E 3 HOH A 5 406 406 HOH HOH . 
E 3 HOH A 6 407 407 HOH HOH . 
E 3 HOH A 7 408 408 HOH HOH . 
E 3 HOH A 8 409 409 HOH HOH . 
E 3 HOH A 9 410 410 HOH HOH . 
E 3 HOH A 10 411 411 HOH HOH . 
E 3 HOH A 11 412 412 HOH HOH . 
E 3 HOH A 12 413 413 HOH HOH . 
E 3 HOH A 13 414 414 HOH HOH . 
E 3 HOH A 14 415 415 HOH HOH . 
E 3 HOH A 15 416 416 HOH HOH . 
E 3 HOH A 16 417 417 HOH HOH . 
E 3 HOH A 17 418 418 HOH HOH . 
E 3 HOH A 18 419 419 HOH HOH . 
E 3 HOH A 19 420 420 HOH HOH . 
E 3 HOH A 20 421 421 HOH HOH . 
E 3 HOH A 21 422 422 HOH HOH . 
E 3 HOH A 22 423 423 HOH HOH . 
E 3 HOH A 23 424 424 HOH HOH . 
E 3 HOH A 24 425 425 HOH HOH . 
E 3 HOH A 25 426 426 HOH HOH . 
E 3 HOH A 26 427 427 HOH HOH . 
E 3 HOH A 27 428 428 HOH HOH . 
E 3 HOH A 28 429 429 HOH HOH . 
E 3 HOH A 29 430 430 HOH HOH . 
E 3 HOH A 30 431 431 HOH HOH . 
E 3 HOH A 31 432 432 HOH HOH . 
E 3 HOH A 32 433 433 HOH HOH . 
E 3 HOH A 33 434 434 HOH HOH . 
E 3 HOH A 34 435 435 HOH HOH . 
E 3 HOH A 35 436 436 HOH HOH . 
E 3 HOH A 36 437 437 HOH HOH . 
E 3 HOH A 37 438 438 HOH HOH . 
E 3 HOH A 38 439 439 HOH HOH . 
E 3 HOH A 39 440 440 HOH HOH . 
E 3 HOH A 40 441 441 HOH HOH . 
E 3 HOH A 41 442 442 HOH HOH . 
E 3 HOH A 42 443 443 HOH HOH . 
E 3 HOH A 43 444 444 HOH HOH . 
E 3 HOH A 44 445 445 HOH HOH . 
E 3 HOH A 45 446 446 HOH HOH . 
E 3 HOH A 46 447 447 HOH HOH . 
E 3 HOH A 47 448 448 HOH HOH . 
E 3 HOH A 48 449 449 HOH HOH . 
E 3 HOH A 49 450 450 HOH HOH . 
E 3 HOH A 50 451 451 HOH HOH . 
E 3 HOH A 51 452 452 HOH HOH . 
E 3 HOH A 52 453 453 HOH HOH . 
E 3 HOH A 53 454 454 HOH HOH . 
E 3 HOH A 54 455 455 HOH HOH . 
E 3 HOH A 55 456 456 HOH HOH . 
E 3 HOH A 56 457 457 HOH HOH . 
E 3 HOH A 57 458 458 HOH HOH . 
E 3 HOH A 58 459 459 HOH HOH . 
E 3 HOH A 59 460 460 HOH HOH . 
E 3 HOH A 60 461 461 HOH HOH . 
E 3 HOH A 61 462 462 HOH HOH . 
E 3 HOH A 62 463 463 HOH HOH . 
E 3 HOH A 63 464 464 HOH HOH . 
E 3 HOH A 64 465 465 HOH HOH . 
E 3 HOH A 65 466 466 HOH HOH . 
E 3 HOH A 66 467 467 HOH HOH . 
E 3 HOH A 67 468 468 HOH HOH . 
E 3 HOH A 68 469 469 HOH HOH . 
E 3 HOH A 69 470 470 HOH HOH . 
E 3 HOH A 70 471 471 HOH HOH . 
E 3 HOH A 71 472 472 HOH HOH . 
E 3 HOH A 72 473 473 HOH HOH . 
E 3 HOH A 73 474 474 HOH HOH . 
E 3 HOH A 74 475 475 HOH HOH . 
E 3 HOH A 75 476 476 HOH HOH . 
E 3 HOH A 76 477 477 HOH HOH . 
E 3 HOH A 77 478 478 HOH HOH . 
E 3 HOH A 78 479 479 HOH HOH . 
E 3 HOH A 79 480 481 HOH HOH . 
E 3 HOH A 80 481 482 HOH HOH . 
E 3 HOH A 81 482 483 HOH HOH . 
E 3 HOH A 82 483 484 HOH HOH . 
E 3 HOH A 83 484 485 HOH HOH . 
E 3 HOH A 84 485 486 HOH HOH . 
E 3 HOH A 85 486 487 HOH HOH . 
E 3 HOH A 86 487 488 HOH HOH . 
E 3 HOH A 87 488 489 HOH HOH . 
E 3 HOH A 88 489 490 HOH HOH . 
E 3 HOH A 89 490 491 HOH HOH . 
E 3 HOH A 90 491 492 HOH HOH . 
E 3 HOH A 91 492 493 HOH HOH . 
E 3 HOH A 92 493 494 HOH HOH . 
E 3 HOH A 93 494 495 HOH HOH . 
E 3 HOH A 94 495 496 HOH HOH . 
E 3 HOH A 95 496 497 HOH HOH . 
E 3 HOH A 96 497 498 HOH HOH . 
E 3 HOH A 97 498 499 HOH HOH . 
E 3 HOH A 98 499 500 HOH HOH . 
E 3 HOH A 99 500 501 HOH HOH . 
E 3 HOH A 100 501 502 HOH HOH . 
E 3 HOH A 101 502 503 HOH HOH . 
E 3 HOH A 102 503 504 HOH HOH . 
E 3 HOH A 103 504 505 HOH HOH . 
E 3 HOH A 104 505 506 HOH HOH . 
E 3 HOH A 105 506 507 HOH HOH . 
E 3 HOH A 106 507 508 HOH HOH . 
E 3 HOH A 107 508 509 HOH HOH . 
E 3 HOH A 108 509 510 HOH HOH . 
E 3 HOH A 109 510 511 HOH HOH . 
E 3 HOH A 110 511 512 HOH HOH . 
E 3 HOH A 111 512 513 HOH HOH . 
E 3 HOH A 112 513 514 HOH HOH . 
E 3 HOH A 113 514 515 HOH HOH . 
E 3 HOH A 114 515 516 HOH HOH . 
E 3 HOH A 115 516 517 HOH HOH . 
E 3 HOH A 116 517 518 HOH HOH . 
E 3 HOH A 117 518 519 HOH HOH . 
E 3 HOH A 118 519 520 HOH HOH . 
E 3 HOH A 119 520 521 HOH HOH . 
E 3 HOH A 120 521 522 HOH HOH . 
E 3 HOH A 121 522 523 HOH HOH . 
E 3 HOH A 122 523 524 HOH HOH . 
E 3 HOH A 123 524 453 HOH HOH . 
F 3 HOH B 1 402 480 HOH HOH . 
F 3 HOH B 2 403 402 HOH HOH . 
F 3 HOH B 3 404 403 HOH HOH . 
F 3 HOH B 4 405 404 HOH HOH . 
F 3 HOH B 5 406 405 HOH HOH . 
F 3 HOH B 6 407 406 HOH HOH . 
F 3 HOH B 7 408 407 HOH HOH . 
F 3 HOH B 8 409 408 HOH HOH . 
F 3 HOH B 9 410 409 HOH HOH . 
F 3 HOH B 10 411 410 HOH HOH . 
F 3 HOH B 11 412 411 HOH HOH . 
F 3 HOH B 12 413 412 HOH HOH . 
F 3 HOH B 13 414 413 HOH HOH . 
F 3 HOH B 14 415 414 HOH HOH . 
F 3 HOH B 15 416 415 HOH HOH . 
F 3 HOH B 16 417 416 HOH HOH . 
F 3 HOH B 17 418 417 HOH HOH . 
F 3 HOH B 18 419 418 HOH HOH . 
F 3 HOH B 19 420 419 HOH HOH . 
F 3 HOH B 20 421 420 HOH HOH . 
F 3 HOH B 21 422 421 HOH HOH . 
F 3 HOH B 22 423 422 HOH HOH . 
F 3 HOH B 23 424 423 HOH HOH . 
F 3 HOH B 24 425 424 HOH HOH . 
F 3 HOH B 25 426 425 HOH HOH . 
F 3 HOH B 26 427 426 HOH HOH . 
F 3 HOH B 27 428 427 HOH HOH . 
F 3 HOH B 28 429 428 HOH HOH . 
F 3 HOH B 29 430 429 HOH HOH . 
F 3 HOH B 30 431 430 HOH HOH . 
F 3 HOH B 31 432 431 HOH HOH . 
F 3 HOH B 32 433 432 HOH HOH . 
F 3 HOH B 33 434 433 HOH HOH . 
F 3 HOH B 34 435 434 HOH HOH . 
F 3 HOH B 35 436 435 HOH HOH . 
F 3 HOH B 36 437 436 HOH HOH . 
F 3 HOH B 37 438 437 HOH HOH . 
F 3 HOH B 38 439 438 HOH HOH . 
F 3 HOH B 39 440 439 HOH HOH . 
F 3 HOH B 40 441 440 HOH HOH . 
F 3 HOH B 41 442 441 HOH HOH . 
F 3 HOH B 42 443 442 HOH HOH . 
F 3 HOH B 43 444 443 HOH HOH . 
F 3 HOH B 44 445 444 HOH HOH . 
F 3 HOH B 45 446 445 HOH HOH . 
F 3 HOH B 46 447 446 HOH HOH . 
F 3 HOH B 47 448 447 HOH HOH . 
F 3 HOH B 48 449 448 HOH HOH . 
F 3 HOH B 49 450 449 HOH HOH . 
F 3 HOH B 50 451 450 HOH HOH . 
F 3 HOH B 51 452 451 HOH HOH . 
F 3 HOH B 52 453 452 HOH HOH . 
F 3 HOH B 53 454 454 HOH HOH . 
F 3 HOH B 54 455 455 HOH HOH . 
F 3 HOH B 55 456 456 HOH HOH . 
F 3 HOH B 56 457 457 HOH HOH . 
F 3 HOH B 57 458 458 HOH HOH . 
F 3 HOH B 58 459 459 HOH HOH . 
F 3 HOH B 59 460 460 HOH HOH . 
F 3 HOH B 60 461 461 HOH HOH . 
F 3 HOH B 61 462 462 HOH HOH . 
F 3 HOH B 62 463 463 HOH HOH . 
F 3 HOH B 63 464 464 HOH HOH . 
F 3 HOH B 64 465 465 HOH HOH . 
F 3 HOH B 65 466 466 HOH HOH . 
F 3 HOH B 66 467 467 HOH HOH . 
F 3 HOH B 67 468 468 HOH HOH . 
F 3 HOH B 68 469 469 HOH HOH . 
F 3 HOH B 69 470 470 HOH HOH . 
F 3 HOH B 70 471 471 HOH HOH . 
F 3 HOH B 71 472 472 HOH HOH . 
F 3 HOH B 72 473 473 HOH HOH . 
F 3 HOH B 73 474 474 HOH HOH . 
F 3 HOH B 74 475 475 HOH HOH . 
F 3 HOH B 75 476 476 HOH HOH . 
F 3 HOH B 76 477 477 HOH HOH . 
F 3 HOH B 77 478 478 HOH HOH . 
F 3 HOH B 78 479 479 HOH HOH . 
F 3 HOH B 79 480 480 HOH HOH . 
F 3 HOH B 80 481 481 HOH HOH . 
F 3 HOH B 81 482 482 HOH HOH . 
F 3 HOH B 82 483 483 HOH HOH . 
F 3 HOH B 83 484 484 HOH HOH . 
F 3 HOH B 84 485 485 HOH HOH . 
F 3 HOH B 85 486 486 HOH HOH . 
F 3 HOH B 86 487 487 HOH HOH . 
F 3 HOH B 87 488 488 HOH HOH . 
F 3 HOH B 88 489 489 HOH HOH . 
F 3 HOH B 89 490 490 HOH HOH . 
F 3 HOH B 90 491 491 HOH HOH . 
F 3 HOH B 91 492 492 HOH HOH . 
F 3 HOH B 92 493 493 HOH HOH . 
F 3 HOH B 93 494 494 HOH HOH . 
F 3 HOH B 94 495 495 HOH HOH . 
F 3 HOH B 95 496 496 HOH HOH . 
F 3 HOH B 96 497 497 HOH HOH . 
F 3 HOH B 97 498 498 HOH HOH . 
F 3 HOH B 98 499 499 HOH HOH . 
F 3 HOH B 99 500 500 HOH HOH . 
F 3 HOH B 100 501 501 HOH HOH . 
F 3 HOH B 101 502 502 HOH HOH . 
F 3 HOH B 102 503 503 HOH HOH . 
F 3 HOH B 103 504 504 HOH HOH . 
F 3 HOH B 104 505 505 HOH HOH . 
F 3 HOH B 105 506 506 HOH HOH . 
F 3 HOH B 106 507 507 HOH HOH . 
F 3 HOH B 107 508 508 HOH HOH . 
F 3 HOH B 108 509 509 HOH HOH . 
F 3 HOH B 109 510 510 HOH HOH . 
F 3 HOH B 110 511 511 HOH HOH . 
F 3 HOH B 111 512 512 HOH HOH . 
F 3 HOH B 112 513 513 HOH HOH . 
F 3 HOH B 113 514 514 HOH HOH . 
F 3 HOH B 114 515 515 HOH HOH . 
F 3 HOH B 115 516 516 HOH HOH . 
F 3 HOH B 116 517 517 HOH HOH . 
F 3 HOH B 117 518 518 HOH HOH . 
F 3 HOH B 118 519 519 HOH HOH . 
F 3 HOH B 119 520 520 HOH HOH . 
F 3 HOH B 120 521 521 HOH HOH . 
F 3 HOH B 121 522 522 HOH HOH . 
F 3 HOH B 122 523 523 HOH HOH . 
F 3 HOH B 123 524 524 HOH HOH . 
F 3 HOH B 124 525 525 HOH HOH . 
F 3 HOH B 125 526 526 HOH HOH . 
F 3 HOH B 126 527 527 HOH HOH . 
F 3 HOH B 127 528 528 HOH HOH . 
F 3 HOH B 128 529 529 HOH HOH . 
F 3 HOH B 129 530 530 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O HYN . . . D 2 46.311 28.945 13.14 1 24.56 ? O HYN 401 B 1 
HETATM 2 C C HYN . . . D 2 45.959 29.712 12.22 1 22.28 ? C HYN 401 B 1 
HETATM 3 C C1 HYN . . . D 2 46.549 31.076 12.117 1 23.52 ? C1 HYN 401 B 1 
HETATM 4 N N HYN . . . D 2 45.777 31.443 10.938 1 24.14 ? N HYN 401 B 1 
HETATM 5 N N1 HYN . . . D 2 45.063 29.254 11.386 1 23.17 ? N1 HYN 401 B 1 
HETATM 6 C C2 HYN . . . D 2 44.991 30.364 10.622 1 22.73 ? C2 HYN 401 B 1 
HETATM 7 O O1 HYN . . . D 2 44.191 30.409 9.622 1 20.43 ? O1 HYN 401 B 1 
#
_model_server_stats.io_time_ms              43 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           290 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           7 
#