data_3CL8 # _model_server_result.job_id L_hsTYBLGwMOqrvv1_18DQ _model_server_result.datetime_utc '2024-12-04 05:42:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3cl8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":309}' # _entry.id 3CL8 # _exptl.entry_id 3CL8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 126.117 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-amino-1H-imidazole-4-carboxamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3CL8 _cell.length_a 97.723 _cell.length_b 97.723 _cell.length_c 61.318 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3CL8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 75 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 4' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1,2,3,4 B,D,F 2 1,5,6,7 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 5 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 97.723 97.723 0 6 'crystal symmetry operation' 3_655 -y+1,x,z 0 -1 0 1 0 0 0 0 1 97.723 0 0 7 'crystal symmetry operation' 4_565 y,-x+1,z 0 1 0 -1 0 0 0 0 1 0 97.723 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C4 H6 N4 O' _chem_comp.formula_weight 126.117 _chem_comp.id 5AC _chem_comp.mon_nstd_flag . _chem_comp.name 5-amino-1H-imidazole-4-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag NAA CAG 5AC sing 1 n n CAG OAC 5AC doub 2 n n CAG CAI 5AC sing 3 n n CAI CAH 5AC doub 4 n y CAI NAE 5AC sing 5 n y CAH NAB 5AC sing 6 n n CAH NAF 5AC sing 7 n y NAF CAD 5AC sing 8 n y CAD NAE 5AC doub 9 n y NAA HNAA 5AC sing 10 n n NAA HNAB 5AC sing 11 n n NAB HNAC 5AC sing 12 n n NAB HNAD 5AC sing 13 n n NAF HNAF 5AC sing 14 n n CAD HAD 5AC sing 15 n n # _atom_sites.entry_id 3CL8 _atom_sites.fract_transf_matrix[1][1] 0.010233 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010233 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016308 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 5AC A 1 309 309 5AC 5AC . D 2 5AC B 1 309 309 5AC 5AC . E 3 HOH A 1 310 310 HOH HOH . E 3 HOH A 2 311 311 HOH HOH . E 3 HOH A 3 312 312 HOH HOH . E 3 HOH A 4 313 313 HOH HOH . E 3 HOH A 5 314 314 HOH HOH . E 3 HOH A 6 315 315 HOH HOH . E 3 HOH A 7 316 316 HOH HOH . E 3 HOH A 8 317 317 HOH HOH . E 3 HOH A 9 318 318 HOH HOH . E 3 HOH A 10 319 319 HOH HOH . E 3 HOH A 11 320 320 HOH HOH . E 3 HOH A 12 321 321 HOH HOH . E 3 HOH A 13 322 322 HOH HOH . E 3 HOH A 14 323 323 HOH HOH . E 3 HOH A 15 324 324 HOH HOH . E 3 HOH A 16 325 325 HOH HOH . E 3 HOH A 17 326 326 HOH HOH . E 3 HOH A 18 327 327 HOH HOH . E 3 HOH A 19 328 328 HOH HOH . E 3 HOH A 20 329 329 HOH HOH . E 3 HOH A 21 330 330 HOH HOH . E 3 HOH A 22 331 331 HOH HOH . E 3 HOH A 23 332 332 HOH HOH . E 3 HOH A 24 333 333 HOH HOH . E 3 HOH A 25 334 334 HOH HOH . E 3 HOH A 26 335 335 HOH HOH . E 3 HOH A 27 336 336 HOH HOH . E 3 HOH A 28 337 337 HOH HOH . E 3 HOH A 29 338 338 HOH HOH . E 3 HOH A 30 339 339 HOH HOH . E 3 HOH A 31 340 340 HOH HOH . E 3 HOH A 32 341 341 HOH HOH . E 3 HOH A 33 342 342 HOH HOH . E 3 HOH A 34 343 343 HOH HOH . E 3 HOH A 35 344 344 HOH HOH . E 3 HOH A 36 345 345 HOH HOH . E 3 HOH A 37 346 346 HOH HOH . E 3 HOH A 38 347 347 HOH HOH . E 3 HOH A 39 348 348 HOH HOH . E 3 HOH A 40 349 349 HOH HOH . E 3 HOH A 41 350 350 HOH HOH . E 3 HOH A 42 351 351 HOH HOH . E 3 HOH A 43 352 352 HOH HOH . E 3 HOH A 44 353 353 HOH HOH . E 3 HOH A 45 354 354 HOH HOH . E 3 HOH A 46 355 355 HOH HOH . E 3 HOH A 47 356 356 HOH HOH . E 3 HOH A 48 357 357 HOH HOH . E 3 HOH A 49 358 358 HOH HOH . E 3 HOH A 50 359 359 HOH HOH . E 3 HOH A 51 360 360 HOH HOH . E 3 HOH A 52 361 361 HOH HOH . E 3 HOH A 53 362 362 HOH HOH . E 3 HOH A 54 363 363 HOH HOH . E 3 HOH A 55 364 364 HOH HOH . E 3 HOH A 56 365 365 HOH HOH . E 3 HOH A 57 366 366 HOH HOH . E 3 HOH A 58 367 367 HOH HOH . E 3 HOH A 59 368 368 HOH HOH . E 3 HOH A 60 369 369 HOH HOH . E 3 HOH A 61 370 370 HOH HOH . E 3 HOH A 62 371 371 HOH HOH . E 3 HOH A 63 372 372 HOH HOH . E 3 HOH A 64 373 373 HOH HOH . E 3 HOH A 65 374 374 HOH HOH . E 3 HOH A 66 375 375 HOH HOH . E 3 HOH A 67 376 376 HOH HOH . E 3 HOH A 68 377 377 HOH HOH . F 3 HOH B 1 310 310 HOH HOH . F 3 HOH B 2 311 311 HOH HOH . F 3 HOH B 3 312 312 HOH HOH . F 3 HOH B 4 313 313 HOH HOH . F 3 HOH B 5 314 314 HOH HOH . F 3 HOH B 6 315 315 HOH HOH . F 3 HOH B 7 316 316 HOH HOH . F 3 HOH B 8 317 317 HOH HOH . F 3 HOH B 9 318 318 HOH HOH . F 3 HOH B 10 319 319 HOH HOH . F 3 HOH B 11 320 320 HOH HOH . F 3 HOH B 12 321 321 HOH HOH . F 3 HOH B 13 322 322 HOH HOH . F 3 HOH B 14 323 323 HOH HOH . F 3 HOH B 15 324 324 HOH HOH . F 3 HOH B 16 325 325 HOH HOH . F 3 HOH B 17 326 326 HOH HOH . F 3 HOH B 18 327 327 HOH HOH . F 3 HOH B 19 328 328 HOH HOH . F 3 HOH B 20 329 329 HOH HOH . F 3 HOH B 21 330 330 HOH HOH . F 3 HOH B 22 331 331 HOH HOH . F 3 HOH B 23 332 332 HOH HOH . F 3 HOH B 24 333 333 HOH HOH . F 3 HOH B 25 334 334 HOH HOH . F 3 HOH B 26 335 335 HOH HOH . F 3 HOH B 27 336 336 HOH HOH . F 3 HOH B 28 337 337 HOH HOH . F 3 HOH B 29 338 338 HOH HOH . F 3 HOH B 30 339 339 HOH HOH . F 3 HOH B 31 340 340 HOH HOH . F 3 HOH B 32 341 341 HOH HOH . F 3 HOH B 33 342 342 HOH HOH . F 3 HOH B 34 343 343 HOH HOH . F 3 HOH B 35 344 344 HOH HOH . F 3 HOH B 36 345 345 HOH HOH . F 3 HOH B 37 346 346 HOH HOH . F 3 HOH B 38 347 347 HOH HOH . F 3 HOH B 39 348 348 HOH HOH . F 3 HOH B 40 349 349 HOH HOH . F 3 HOH B 41 350 350 HOH HOH . F 3 HOH B 42 351 351 HOH HOH . F 3 HOH B 43 352 352 HOH HOH . F 3 HOH B 44 353 353 HOH HOH . F 3 HOH B 45 354 354 HOH HOH . F 3 HOH B 46 355 355 HOH HOH . F 3 HOH B 47 356 356 HOH HOH . F 3 HOH B 48 357 357 HOH HOH . F 3 HOH B 49 358 358 HOH HOH . F 3 HOH B 50 359 359 HOH HOH . F 3 HOH B 51 360 360 HOH HOH . F 3 HOH B 52 361 361 HOH HOH . F 3 HOH B 53 362 362 HOH HOH . F 3 HOH B 54 363 363 HOH HOH . F 3 HOH B 55 364 364 HOH HOH . F 3 HOH B 56 365 365 HOH HOH . F 3 HOH B 57 366 366 HOH HOH . F 3 HOH B 58 367 367 HOH HOH . F 3 HOH B 59 368 368 HOH HOH . F 3 HOH B 60 369 369 HOH HOH . F 3 HOH B 61 370 370 HOH HOH . F 3 HOH B 62 371 371 HOH HOH . F 3 HOH B 63 372 372 HOH HOH . F 3 HOH B 64 373 373 HOH HOH . F 3 HOH B 65 374 374 HOH HOH . F 3 HOH B 66 375 375 HOH HOH . F 3 HOH B 67 376 376 HOH HOH . F 3 HOH B 68 377 377 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N NAA 5AC . . . D 2 46.082 29.396 9.689 1 49.25 ? NAA 5AC 309 B 1 HETATM 2 C CAG 5AC . . . D 2 45.273 29.723 10.548 1 51.57 ? CAG 5AC 309 B 1 HETATM 3 O OAC 5AC . . . D 2 44.133 30.326 10.246 1 38.34 ? OAC 5AC 309 B 1 HETATM 4 C CAI 5AC . . . D 2 45.524 29.45 11.995 1 57.15 ? CAI 5AC 309 B 1 HETATM 5 C CAH 5AC . . . D 2 45.973 30.376 12.908 1 63.52 ? CAH 5AC 309 B 1 HETATM 6 N NAB 5AC . . . D 2 46.237 31.671 12.642 1 72.4 ? NAB 5AC 309 B 1 HETATM 7 N NAF 5AC . . . D 2 46.056 29.812 14.123 1 62.94 ? NAF 5AC 309 B 1 HETATM 8 C CAD 5AC . . . D 2 45.688 28.53 13.963 1 59.83 ? CAD 5AC 309 B 1 HETATM 9 N NAE 5AC . . . D 2 45.36 28.312 12.67 1 57.98 ? NAE 5AC 309 B 1 # _model_server_stats.io_time_ms 83 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 9 #