data_3CL9
#
_model_server_result.job_id            04ebhUpN3ihiuGY6kUWQQw 
_model_server_result.datetime_utc      '2024-11-23 12:45:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3cl9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":601}' 
#
_entry.id    3CL9 
#
_exptl.entry_id    3CL9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3CL9 
_cell.length_a            121.05 
_cell.length_b            121.05 
_cell.length_c            260.76 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3CL9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        98 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 41 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA tetrameric 4 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K,L 1 1,2 
A,B,C,D,E,F,G,H,I,J,K,L 2 1,3 
A,B,C,D,E,F,G,H,I,J,K,L 3 1,2,4,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 10_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 
3 'crystal symmetry operation' 15_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 
4 'crystal symmetry operation' 8_555 -y,-x,-z 0 -1 0 -1 0 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             G 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 303 n n 
PA O2A NAP sing 304 n n 
PA O5B NAP sing 305 n n 
PA O3 NAP sing 306 n n 
O2A HOA2 NAP sing 307 n n 
O5B C5B NAP sing 308 n n 
C5B C4B NAP sing 309 n n 
C5B H51A NAP sing 310 n n 
C5B H52A NAP sing 311 n n 
C4B O4B NAP sing 312 n n 
C4B C3B NAP sing 313 n n 
C4B H4B NAP sing 314 n n 
O4B C1B NAP sing 315 n n 
C3B O3B NAP sing 316 n n 
C3B C2B NAP sing 317 n n 
C3B H3B NAP sing 318 n n 
O3B HO3A NAP sing 319 n n 
C2B O2B NAP sing 320 n n 
C2B C1B NAP sing 321 n n 
C2B H2B NAP sing 322 n n 
O2B P2B NAP sing 323 n n 
C1B N9A NAP sing 324 n n 
C1B H1B NAP sing 325 n n 
N9A C8A NAP sing 326 n y 
N9A C4A NAP sing 327 n y 
C8A N7A NAP doub 328 n y 
C8A H8A NAP sing 329 n n 
N7A C5A NAP sing 330 n y 
C5A C6A NAP sing 331 n y 
C5A C4A NAP doub 332 n y 
C6A N6A NAP sing 333 n n 
C6A N1A NAP doub 334 n y 
N6A H61A NAP sing 335 n n 
N6A H62A NAP sing 336 n n 
N1A C2A NAP sing 337 n y 
C2A N3A NAP doub 338 n y 
C2A H2A NAP sing 339 n n 
N3A C4A NAP sing 340 n y 
O3 PN NAP sing 341 n n 
PN O1N NAP doub 342 n n 
PN O2N NAP sing 343 n n 
PN O5D NAP sing 344 n n 
O5D C5D NAP sing 345 n n 
C5D C4D NAP sing 346 n n 
C5D H51N NAP sing 347 n n 
C5D H52N NAP sing 348 n n 
C4D O4D NAP sing 349 n n 
C4D C3D NAP sing 350 n n 
C4D H4D NAP sing 351 n n 
O4D C1D NAP sing 352 n n 
C3D O3D NAP sing 353 n n 
C3D C2D NAP sing 354 n n 
C3D H3D NAP sing 355 n n 
O3D HO3N NAP sing 356 n n 
C2D O2D NAP sing 357 n n 
C2D C1D NAP sing 358 n n 
C2D H2D NAP sing 359 n n 
O2D HO2N NAP sing 360 n n 
C1D N1N NAP sing 361 n n 
C1D H1D NAP sing 362 n n 
N1N C2N NAP sing 363 n y 
N1N C6N NAP doub 364 n y 
C2N C3N NAP doub 365 n y 
C2N H2N NAP sing 366 n n 
C3N C7N NAP sing 367 n n 
C3N C4N NAP sing 368 n y 
C7N O7N NAP doub 369 n n 
C7N N7N NAP sing 370 n n 
N7N H71N NAP sing 371 n n 
N7N H72N NAP sing 372 n n 
C4N C5N NAP doub 373 n y 
C4N H4N NAP sing 374 n n 
C5N C6N NAP sing 375 n y 
C5N H5N NAP sing 376 n n 
C6N H6N NAP sing 377 n n 
P2B O1X NAP doub 378 n n 
P2B O2X NAP sing 379 n n 
P2B O3X NAP sing 380 n n 
O2X HOP2 NAP sing 381 n n 
O3X HOP3 NAP sing 382 n n 
#
_atom_sites.entry_id                     3CL9 
_atom_sites.fract_transf_matrix[1][1]    0.008261 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008261 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003835 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SO4 A 1 801 801 SO4 SO4 . 
C 2 SO4 A 1 802 802 SO4 SO4 . 
D 3 CL A 1 901 901 CL CL . 
E 3 CL A 1 902 902 CL CL . 
F 3 CL A 1 903 903 CL CL . 
G 4 NAP A 1 601 601 NAP NAP . 
H 5 MTX A 1 602 602 MTX MTX . 
I 6 UMP A 1 603 603 UMP UMP . 
J 7 EDO A 1 701 701 EDO EDO . 
K 7 EDO A 1 702 702 EDO EDO . 
L 8 HOH A 1 904 1 HOH HOH . 
L 8 HOH A 2 905 2 HOH HOH . 
L 8 HOH A 3 906 3 HOH HOH . 
L 8 HOH A 4 907 4 HOH HOH . 
L 8 HOH A 5 908 5 HOH HOH . 
L 8 HOH A 6 909 6 HOH HOH . 
L 8 HOH A 7 910 7 HOH HOH . 
L 8 HOH A 8 911 8 HOH HOH . 
L 8 HOH A 9 912 9 HOH HOH . 
L 8 HOH A 10 913 10 HOH HOH . 
L 8 HOH A 11 914 11 HOH HOH . 
L 8 HOH A 12 915 12 HOH HOH . 
L 8 HOH A 13 916 13 HOH HOH . 
L 8 HOH A 14 917 14 HOH HOH . 
L 8 HOH A 15 918 15 HOH HOH . 
L 8 HOH A 16 919 16 HOH HOH . 
L 8 HOH A 17 920 17 HOH HOH . 
L 8 HOH A 18 921 18 HOH HOH . 
L 8 HOH A 19 922 19 HOH HOH . 
L 8 HOH A 20 923 20 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . . . G 4 -38.795 18.573 -5.452 1 125.7 ? PA NAP 601 A 1 
HETATM 2 O O1A NAP . . . G 4 -40.036 17.85 -5.105 1 125.24 ? O1A NAP 601 A 1 
HETATM 3 O O2A NAP . . . G 4 -37.657 17.998 -4.708 1 126.08 ? O2A NAP 601 A 1 
HETATM 4 O O5B NAP . . . G 4 -38.973 20.151 -5.141 1 126.09 ? O5B NAP 601 A 1 
HETATM 5 C C5B NAP . . . G 4 -38.24 20.828 -4.133 1 126.16 ? C5B NAP 601 A 1 
HETATM 6 C C4B NAP . . . G 4 -39.181 21.617 -3.222 1 126.02 ? C4B NAP 601 A 1 
HETATM 7 O O4B NAP . . . G 4 -39.068 21.203 -1.863 1 125.94 ? O4B NAP 601 A 1 
HETATM 8 C C3B NAP . . . G 4 -38.918 23.118 -3.233 1 125.76 ? C3B NAP 601 A 1 
HETATM 9 O O3B NAP . . . G 4 -39.6 23.762 -4.285 1 125.68 ? O3B NAP 601 A 1 
HETATM 10 C C2B NAP . . . G 4 -39.372 23.557 -1.846 1 125.81 ? C2B NAP 601 A 1 
HETATM 11 O O2B NAP . . . G 4 -40.752 23.916 -1.795 1 124.97 ? O2B NAP 601 A 1 
HETATM 12 C C1B NAP . . . G 4 -39.073 22.319 -0.987 1 126.19 ? C1B NAP 601 A 1 
HETATM 13 N N9A NAP . . . G 4 -37.733 22.534 -0.389 1 126.45 ? N9A NAP 601 A 1 
HETATM 14 C C8A NAP . . . G 4 -36.551 22.007 -0.85 1 126.6 ? C8A NAP 601 A 1 
HETATM 15 N N7A NAP . . . G 4 -35.536 22.45 -0.072 1 126.78 ? N7A NAP 601 A 1 
HETATM 16 C C5A NAP . . . G 4 -36.043 23.262 0.882 1 126.71 ? C5A NAP 601 A 1 
HETATM 17 C C6A NAP . . . G 4 -35.446 23.973 1.921 1 126.48 ? C6A NAP 601 A 1 
HETATM 18 N N6A NAP . . . G 4 -34.128 23.909 2.099 1 126.44 ? N6A NAP 601 A 1 
HETATM 19 N N1A NAP . . . G 4 -36.23 24.744 2.764 1 126.39 ? N1A NAP 601 A 1 
HETATM 20 C C2A NAP . . . G 4 -37.598 24.806 2.57 1 126.39 ? C2A NAP 601 A 1 
HETATM 21 N N3A NAP . . . G 4 -38.181 24.095 1.535 1 126.46 ? N3A NAP 601 A 1 
HETATM 22 C C4A NAP . . . G 4 -37.424 23.331 0.698 1 126.62 ? C4A NAP 601 A 1 
HETATM 23 O O3 NAP . . . G 4 -38.534 18.492 -7.041 1 125.61 ? O3 NAP 601 A 1 
HETATM 24 P PN NAP . . . G 4 -37.418 19.19 -7.971 1 125.68 ? PN NAP 601 A 1 
HETATM 25 O O1N NAP . . . G 4 -37.665 20.647 -7.991 1 125.34 ? O1N NAP 601 A 1 
HETATM 26 O O2N NAP . . . G 4 -36.08 18.746 -7.534 1 126.28 ? O2N NAP 601 A 1 
HETATM 27 O O5D NAP . . . G 4 -37.736 18.543 -9.421 1 126.87 ? O5D NAP 601 A 1 
HETATM 28 C C5D NAP . . . G 4 -37.156 17.325 -9.865 1 128.52 ? C5D NAP 601 A 1 
HETATM 29 C C4D NAP . . . G 4 -38.191 16.416 -10.534 1 129.99 ? C4D NAP 601 A 1 
HETATM 30 O O4D NAP . . . G 4 -37.664 15.114 -10.775 1 130.64 ? O4D NAP 601 A 1 
HETATM 31 C C3D NAP . . . G 4 -39.441 16.237 -9.678 1 130.58 ? C3D NAP 601 A 1 
HETATM 32 O O3D NAP . . . G 4 -40.488 17.044 -10.167 1 131.28 ? O3D NAP 601 A 1 
HETATM 33 C C2D NAP . . . G 4 -39.773 14.749 -9.725 1 130.89 ? C2D NAP 601 A 1 
HETATM 34 O O2D NAP . . . G 4 -41.024 14.452 -10.319 1 130.58 ? O2D NAP 601 A 1 
HETATM 35 C C1D NAP . . . G 4 -38.621 14.092 -10.492 1 130.72 ? C1D NAP 601 A 1 
HETATM 36 N N1N NAP . . . G 4 -38.069 12.941 -9.711 1 130.82 ? N1N NAP 601 A 1 
HETATM 37 C C2N NAP . . . G 4 -37.286 11.973 -10.313 1 130.3 ? C2N NAP 601 A 1 
HETATM 38 C C3N NAP . . . G 4 -36.783 10.88 -9.583 1 129.64 ? C3N NAP 601 A 1 
HETATM 39 C C7N NAP . . . G 4 -36.488 9.569 -10.27 1 128.92 ? C7N NAP 601 A 1 
HETATM 40 O O7N NAP . . . G 4 -36.505 8.382 -9.511 1 128.36 ? O7N NAP 601 A 1 
HETATM 41 N N7N NAP . . . G 4 -36.216 9.532 -11.573 1 128.43 ? N7N NAP 601 A 1 
HETATM 42 C C4N NAP . . . G 4 -37.084 10.803 -8.224 1 129.93 ? C4N NAP 601 A 1 
HETATM 43 C C5N NAP . . . G 4 -37.879 11.767 -7.618 1 130 ? C5N NAP 601 A 1 
HETATM 44 C C6N NAP . . . G 4 -38.364 12.829 -8.37 1 130.53 ? C6N NAP 601 A 1 
HETATM 45 P P2B NAP . . . G 4 -41.334 25.366 -1.345 1 123.72 ? P2B NAP 601 A 1 
HETATM 46 O O1X NAP . . . G 4 -42.657 25.149 -0.654 1 123.37 ? O1X NAP 601 A 1 
HETATM 47 O O2X NAP . . . G 4 -40.396 26.092 -0.41 1 123.53 ? O2X NAP 601 A 1 
HETATM 48 O O3X NAP . . . G 4 -41.553 26.229 -2.56 1 123.73 ? O3X NAP 601 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           276 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           48 
#