data_3CL9 # _model_server_result.job_id EEzP0o3WO7IiQVOZqTbPPA _model_server_result.datetime_utc '2024-11-27 03:14:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3cl9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":701}' # _entry.id 3CL9 # _exptl.entry_id 3CL9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3CL9 _cell.length_a 121.05 _cell.length_b 121.05 _cell.length_c 260.76 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3CL9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA tetrameric 4 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L 1 1,2 A,B,C,D,E,F,G,H,I,J,K,L 2 1,3 A,B,C,D,E,F,G,H,I,J,K,L 3 1,2,4,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 15_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 8_555 -y,-x,-z 0 -1 0 -1 0 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 J N N ? 7 K N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 3CL9 _atom_sites.fract_transf_matrix[1][1] 0.008261 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008261 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003835 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 801 801 SO4 SO4 . C 2 SO4 A 1 802 802 SO4 SO4 . D 3 CL A 1 901 901 CL CL . E 3 CL A 1 902 902 CL CL . F 3 CL A 1 903 903 CL CL . G 4 NAP A 1 601 601 NAP NAP . H 5 MTX A 1 602 602 MTX MTX . I 6 UMP A 1 603 603 UMP UMP . J 7 EDO A 1 701 701 EDO EDO . K 7 EDO A 1 702 702 EDO EDO . L 8 HOH A 1 904 1 HOH HOH . L 8 HOH A 2 905 2 HOH HOH . L 8 HOH A 3 906 3 HOH HOH . L 8 HOH A 4 907 4 HOH HOH . L 8 HOH A 5 908 5 HOH HOH . L 8 HOH A 6 909 6 HOH HOH . L 8 HOH A 7 910 7 HOH HOH . L 8 HOH A 8 911 8 HOH HOH . L 8 HOH A 9 912 9 HOH HOH . L 8 HOH A 10 913 10 HOH HOH . L 8 HOH A 11 914 11 HOH HOH . L 8 HOH A 12 915 12 HOH HOH . L 8 HOH A 13 916 13 HOH HOH . L 8 HOH A 14 917 14 HOH HOH . L 8 HOH A 15 918 15 HOH HOH . L 8 HOH A 16 919 16 HOH HOH . L 8 HOH A 17 920 17 HOH HOH . L 8 HOH A 18 921 18 HOH HOH . L 8 HOH A 19 922 19 HOH HOH . L 8 HOH A 20 923 20 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . J 7 -31.318 -4.578 -6.061 1 80.25 ? C1 EDO 701 A 1 HETATM 2 O O1 EDO . . . J 7 -31.64 -3.879 -4.853 1 80.73 ? O1 EDO 701 A 1 HETATM 3 C C2 EDO . . . J 7 -32.129 -5.865 -6.121 1 79.86 ? C2 EDO 701 A 1 HETATM 4 O O2 EDO . . . J 7 -31.209 -6.96 -6.038 1 80.32 ? O2 EDO 701 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 32 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 678 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 4 #