data_3CLB
#
_model_server_result.job_id            UKzAtS1ug2X0_dQ6PLrJ_A 
_model_server_result.datetime_utc      '2024-11-17 00:38:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3clb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":602}' 
#
_entry.id    3CLB 
#
_exptl.entry_id    3CLB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3CLB 
_cell.length_a            176.571 
_cell.length_b            176.571 
_cell.length_c            251.848 
_cell.Z_PDB               32 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3CLB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,F,G,H,I,S,T,U,V,W,Z 1 1 
B,C,J,K,L,M,N,O,P,Q,R,X,Y 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 J N N 
? 3 O N N 
? 3 T N N 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 246 n n 
PA O2A NAP sing 247 n n 
PA O5B NAP sing 248 n n 
PA O3 NAP sing 249 n n 
O2A HOA2 NAP sing 250 n n 
O5B C5B NAP sing 251 n n 
C5B C4B NAP sing 252 n n 
C5B H51A NAP sing 253 n n 
C5B H52A NAP sing 254 n n 
C4B O4B NAP sing 255 n n 
C4B C3B NAP sing 256 n n 
C4B H4B NAP sing 257 n n 
O4B C1B NAP sing 258 n n 
C3B O3B NAP sing 259 n n 
C3B C2B NAP sing 260 n n 
C3B H3B NAP sing 261 n n 
O3B HO3A NAP sing 262 n n 
C2B O2B NAP sing 263 n n 
C2B C1B NAP sing 264 n n 
C2B H2B NAP sing 265 n n 
O2B P2B NAP sing 266 n n 
C1B N9A NAP sing 267 n n 
C1B H1B NAP sing 268 n n 
N9A C8A NAP sing 269 n y 
N9A C4A NAP sing 270 n y 
C8A N7A NAP doub 271 n y 
C8A H8A NAP sing 272 n n 
N7A C5A NAP sing 273 n y 
C5A C6A NAP sing 274 n y 
C5A C4A NAP doub 275 n y 
C6A N6A NAP sing 276 n n 
C6A N1A NAP doub 277 n y 
N6A H61A NAP sing 278 n n 
N6A H62A NAP sing 279 n n 
N1A C2A NAP sing 280 n y 
C2A N3A NAP doub 281 n y 
C2A H2A NAP sing 282 n n 
N3A C4A NAP sing 283 n y 
O3 PN NAP sing 284 n n 
PN O1N NAP doub 285 n n 
PN O2N NAP sing 286 n n 
PN O5D NAP sing 287 n n 
O5D C5D NAP sing 288 n n 
C5D C4D NAP sing 289 n n 
C5D H51N NAP sing 290 n n 
C5D H52N NAP sing 291 n n 
C4D O4D NAP sing 292 n n 
C4D C3D NAP sing 293 n n 
C4D H4D NAP sing 294 n n 
O4D C1D NAP sing 295 n n 
C3D O3D NAP sing 296 n n 
C3D C2D NAP sing 297 n n 
C3D H3D NAP sing 298 n n 
O3D HO3N NAP sing 299 n n 
C2D O2D NAP sing 300 n n 
C2D C1D NAP sing 301 n n 
C2D H2D NAP sing 302 n n 
O2D HO2N NAP sing 303 n n 
C1D N1N NAP sing 304 n n 
C1D H1D NAP sing 305 n n 
N1N C2N NAP sing 306 n y 
N1N C6N NAP doub 307 n y 
C2N C3N NAP doub 308 n y 
C2N H2N NAP sing 309 n n 
C3N C7N NAP sing 310 n n 
C3N C4N NAP sing 311 n y 
C7N O7N NAP doub 312 n n 
C7N N7N NAP sing 313 n n 
N7N H71N NAP sing 314 n n 
N7N H72N NAP sing 315 n n 
C4N C5N NAP doub 316 n y 
C4N H4N NAP sing 317 n n 
C5N C6N NAP sing 318 n y 
C5N H5N NAP sing 319 n n 
C6N H6N NAP sing 320 n n 
P2B O1X NAP doub 321 n n 
P2B O2X NAP sing 322 n n 
P2B O3X NAP sing 323 n n 
O2X HOP2 NAP sing 324 n n 
O3X HOP3 NAP sing 325 n n 
#
_atom_sites.entry_id                     3CLB 
_atom_sites.fract_transf_matrix[1][1]    0.005663 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005663 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003971 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 SO4 A 1 701 701 SO4 SO4 . 
F 3 NAP A 1 601 601 NAP NAP . 
G 4 TMQ A 1 611 611 TMQ TMQ . 
H 5 EDO A 1 801 801 EDO EDO . 
I 5 EDO A 1 802 802 EDO EDO . 
J 3 NAP B 1 602 602 NAP NAP . 
K 4 TMQ B 1 612 612 TMQ TMQ . 
L 5 EDO B 1 805 805 EDO EDO . 
M 2 SO4 C 1 702 702 SO4 SO4 . 
N 2 SO4 C 1 703 703 SO4 SO4 . 
O 3 NAP C 1 603 603 NAP NAP . 
P 4 TMQ C 1 613 613 TMQ TMQ . 
Q 5 EDO C 1 803 803 EDO EDO . 
R 5 EDO C 1 806 806 EDO EDO . 
S 2 SO4 D 1 704 704 SO4 SO4 . 
T 3 NAP D 1 604 604 NAP NAP . 
U 4 TMQ D 1 614 614 TMQ TMQ . 
V 5 EDO D 1 804 804 EDO EDO . 
W 6 HOH A 1 803 3 HOH HOH . 
W 6 HOH A 2 804 18 HOH HOH . 
W 6 HOH A 3 805 23 HOH HOH . 
W 6 HOH A 4 806 25 HOH HOH . 
W 6 HOH A 5 807 26 HOH HOH . 
W 6 HOH A 6 808 27 HOH HOH . 
W 6 HOH A 7 809 33 HOH HOH . 
W 6 HOH A 8 810 38 HOH HOH . 
W 6 HOH A 9 811 43 HOH HOH . 
W 6 HOH A 10 812 47 HOH HOH . 
W 6 HOH A 11 813 49 HOH HOH . 
W 6 HOH A 12 814 51 HOH HOH . 
W 6 HOH A 13 815 52 HOH HOH . 
W 6 HOH A 14 816 54 HOH HOH . 
W 6 HOH A 15 817 67 HOH HOH . 
W 6 HOH A 16 818 74 HOH HOH . 
W 6 HOH A 17 819 75 HOH HOH . 
W 6 HOH A 18 820 81 HOH HOH . 
W 6 HOH A 19 821 82 HOH HOH . 
X 6 HOH B 1 806 12 HOH HOH . 
X 6 HOH B 2 807 16 HOH HOH . 
X 6 HOH B 3 808 24 HOH HOH . 
X 6 HOH B 4 809 29 HOH HOH . 
X 6 HOH B 5 810 34 HOH HOH . 
X 6 HOH B 6 811 40 HOH HOH . 
X 6 HOH B 7 812 41 HOH HOH . 
X 6 HOH B 8 813 44 HOH HOH . 
X 6 HOH B 9 814 45 HOH HOH . 
X 6 HOH B 10 815 48 HOH HOH . 
X 6 HOH B 11 816 55 HOH HOH . 
X 6 HOH B 12 817 58 HOH HOH . 
X 6 HOH B 13 818 59 HOH HOH . 
X 6 HOH B 14 819 64 HOH HOH . 
X 6 HOH B 15 820 72 HOH HOH . 
X 6 HOH B 16 821 77 HOH HOH . 
X 6 HOH B 17 822 79 HOH HOH . 
X 6 HOH B 18 823 80 HOH HOH . 
X 6 HOH B 19 824 88 HOH HOH . 
X 6 HOH B 20 825 89 HOH HOH . 
X 6 HOH B 21 826 93 HOH HOH . 
Y 6 HOH C 1 807 2 HOH HOH . 
Y 6 HOH C 2 808 5 HOH HOH . 
Y 6 HOH C 3 809 7 HOH HOH . 
Y 6 HOH C 4 810 8 HOH HOH . 
Y 6 HOH C 5 811 10 HOH HOH . 
Y 6 HOH C 6 812 11 HOH HOH . 
Y 6 HOH C 7 813 13 HOH HOH . 
Y 6 HOH C 8 814 15 HOH HOH . 
Y 6 HOH C 9 815 17 HOH HOH . 
Y 6 HOH C 10 816 20 HOH HOH . 
Y 6 HOH C 11 817 22 HOH HOH . 
Y 6 HOH C 12 818 31 HOH HOH . 
Y 6 HOH C 13 819 39 HOH HOH . 
Y 6 HOH C 14 820 42 HOH HOH . 
Y 6 HOH C 15 821 50 HOH HOH . 
Y 6 HOH C 16 822 56 HOH HOH . 
Y 6 HOH C 17 823 60 HOH HOH . 
Y 6 HOH C 18 824 61 HOH HOH . 
Y 6 HOH C 19 825 62 HOH HOH . 
Y 6 HOH C 20 826 66 HOH HOH . 
Y 6 HOH C 21 827 68 HOH HOH . 
Y 6 HOH C 22 828 71 HOH HOH . 
Y 6 HOH C 23 829 73 HOH HOH . 
Y 6 HOH C 24 830 76 HOH HOH . 
Y 6 HOH C 25 831 83 HOH HOH . 
Y 6 HOH C 26 832 84 HOH HOH . 
Y 6 HOH C 27 833 85 HOH HOH . 
Y 6 HOH C 28 834 87 HOH HOH . 
Y 6 HOH C 29 835 90 HOH HOH . 
Y 6 HOH C 30 836 94 HOH HOH . 
Z 6 HOH D 1 805 1 HOH HOH . 
Z 6 HOH D 2 806 4 HOH HOH . 
Z 6 HOH D 3 807 6 HOH HOH . 
Z 6 HOH D 4 808 9 HOH HOH . 
Z 6 HOH D 5 809 14 HOH HOH . 
Z 6 HOH D 6 810 19 HOH HOH . 
Z 6 HOH D 7 811 21 HOH HOH . 
Z 6 HOH D 8 812 28 HOH HOH . 
Z 6 HOH D 9 813 30 HOH HOH . 
Z 6 HOH D 10 814 32 HOH HOH . 
Z 6 HOH D 11 815 35 HOH HOH . 
Z 6 HOH D 12 816 36 HOH HOH . 
Z 6 HOH D 13 817 37 HOH HOH . 
Z 6 HOH D 14 818 46 HOH HOH . 
Z 6 HOH D 15 819 53 HOH HOH . 
Z 6 HOH D 16 820 57 HOH HOH . 
Z 6 HOH D 17 821 63 HOH HOH . 
Z 6 HOH D 18 822 65 HOH HOH . 
Z 6 HOH D 19 823 69 HOH HOH . 
Z 6 HOH D 20 824 70 HOH HOH . 
Z 6 HOH D 21 825 78 HOH HOH . 
Z 6 HOH D 22 826 86 HOH HOH . 
Z 6 HOH D 23 827 91 HOH HOH . 
Z 6 HOH D 24 828 92 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . . . J 3 28.083 -36.25 39.549 0.7 78.99 ? PA NAP 602 B 1 
HETATM 2 O O1A NAP . . . J 3 26.636 -35.957 39.461 0.7 78.23 ? O1A NAP 602 B 1 
HETATM 3 O O2A NAP . . . J 3 28.894 -35.127 39.04 0.7 79.19 ? O2A NAP 602 B 1 
HETATM 4 O O5B NAP . . . J 3 28.456 -37.594 38.754 0.7 79.25 ? O5B NAP 602 B 1 
HETATM 5 C C5B NAP . . . J 3 29.803 -37.978 38.585 0.7 79.53 ? C5B NAP 602 B 1 
HETATM 6 C C4B NAP . . . J 3 29.807 -39.093 37.551 0.7 80 ? C4B NAP 602 B 1 
HETATM 7 O O4B NAP . . . J 3 29.683 -38.576 36.234 0.7 80.06 ? O4B NAP 602 B 1 
HETATM 8 C C3B NAP . . . J 3 31.067 -39.946 37.555 0.7 80.12 ? C3B NAP 602 B 1 
HETATM 9 O O3B NAP . . . J 3 30.999 -40.97 38.521 0.7 80.46 ? O3B NAP 602 B 1 
HETATM 10 C C2B NAP . . . J 3 31.072 -40.484 36.136 0.7 80.22 ? C2B NAP 602 B 1 
HETATM 11 O O2B NAP . . . J 3 30.197 -41.593 36.014 0.7 80.04 ? O2B NAP 602 B 1 
HETATM 12 C C1B NAP . . . J 3 30.485 -39.328 35.334 0.7 79.85 ? C1B NAP 602 B 1 
HETATM 13 N N9A NAP . . . J 3 31.574 -38.493 34.783 0.7 79.57 ? N9A NAP 602 B 1 
HETATM 14 C C8A NAP . . . J 3 32.069 -37.337 35.329 0.7 79.49 ? C8A NAP 602 B 1 
HETATM 15 N N7A NAP . . . J 3 33.06 -36.874 34.54 0.7 79.34 ? N7A NAP 602 B 1 
HETATM 16 C C5A NAP . . . J 3 33.21 -37.715 33.499 0.7 79.29 ? C5A NAP 602 B 1 
HETATM 17 C C6A NAP . . . J 3 34.075 -37.706 32.411 0.7 79.5 ? C6A NAP 602 B 1 
HETATM 18 N N6A NAP . . . J 3 34.964 -36.724 32.274 0.7 79.39 ? N6A NAP 602 B 1 
HETATM 19 N N1A NAP . . . J 3 34.003 -38.725 31.477 0.7 79.69 ? N1A NAP 602 B 1 
HETATM 20 C C2A NAP . . . J 3 33.074 -39.743 31.629 0.7 79.57 ? C2A NAP 602 B 1 
HETATM 21 N N3A NAP . . . J 3 32.216 -39.737 32.716 0.7 79.36 ? N3A NAP 602 B 1 
HETATM 22 C C4A NAP . . . J 3 32.282 -38.741 33.636 0.7 79.34 ? C4A NAP 602 B 1 
HETATM 23 O O3 NAP . . . J 3 28.475 -36.63 41.06 0.7 78.95 ? O3 NAP 602 B 1 
HETATM 24 P PN NAP . . . J 3 29.483 -35.936 42.107 0.7 78.97 ? PN NAP 602 B 1 
HETATM 25 O O1N NAP . . . J 3 29.891 -36.968 43.087 0.7 78.88 ? O1N NAP 602 B 1 
HETATM 26 O O2N NAP . . . J 3 30.539 -35.219 41.36 0.7 78.76 ? O2N NAP 602 B 1 
HETATM 27 O O5D NAP . . . J 3 28.54 -34.849 42.839 0.7 78.39 ? O5D NAP 602 B 1 
HETATM 28 C C5D NAP . . . J 3 27.136 -34.931 42.768 0.7 78.51 ? C5D NAP 602 B 1 
HETATM 29 C C4D NAP . . . J 3 26.526 -34.452 44.077 0.7 78.99 ? C4D NAP 602 B 1 
HETATM 30 O O4D NAP . . . J 3 26.229 -33.073 43.982 0.7 79.11 ? O4D NAP 602 B 1 
HETATM 31 C C3D NAP . . . J 3 25.221 -35.177 44.384 0.7 79.2 ? C3D NAP 602 B 1 
HETATM 32 O O3D NAP . . . J 3 25.231 -35.591 45.732 0.7 79.1 ? O3D NAP 602 B 1 
HETATM 33 C C2D NAP . . . J 3 24.136 -34.14 44.153 0.7 79.33 ? C2D NAP 602 B 1 
HETATM 34 O O2D NAP . . . J 3 23.063 -34.273 45.061 0.7 79.19 ? O2D NAP 602 B 1 
HETATM 35 C C1D NAP . . . J 3 24.878 -32.819 44.33 0.7 79.49 ? C1D NAP 602 B 1 
HETATM 36 N N1N NAP . . . J 3 24.333 -31.731 43.494 0.7 79.65 ? N1N NAP 602 B 1 
HETATM 37 C C2N NAP . . . J 3 23.934 -30.565 44.101 0.7 79.78 ? C2N NAP 602 B 1 
HETATM 38 C C3N NAP . . . J 3 23.415 -29.509 43.349 0.7 79.81 ? C3N NAP 602 B 1 
HETATM 39 C C7N NAP . . . J 3 22.741 -28.347 44.023 0.7 80.03 ? C7N NAP 602 B 1 
HETATM 40 O O7N NAP . . . J 3 21.892 -27.498 43.277 0.7 79.88 ? O7N NAP 602 B 1 
HETATM 41 N N7N NAP . . . J 3 22.964 -28.14 45.32 0.7 80.28 ? N7N NAP 602 B 1 
HETATM 42 C C4N NAP . . . J 3 23.316 -29.652 41.97 0.7 79.82 ? C4N NAP 602 B 1 
HETATM 43 C C5N NAP . . . J 3 23.726 -30.839 41.365 0.7 79.84 ? C5N NAP 602 B 1 
HETATM 44 C C6N NAP . . . J 3 24.238 -31.877 42.136 0.7 79.55 ? C6N NAP 602 B 1 
HETATM 45 P P2B NAP . . . J 3 30.679 -43.059 35.554 0.7 79.51 ? P2B NAP 602 B 1 
HETATM 46 O O1X NAP . . . J 3 29.619 -43.653 34.661 0.7 79.2 ? O1X NAP 602 B 1 
HETATM 47 O O2X NAP . . . J 3 31.994 -42.989 34.813 0.7 79.06 ? O2X NAP 602 B 1 
HETATM 48 O O3X NAP . . . J 3 30.825 -43.924 36.779 0.7 79.6 ? O3X NAP 602 B 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    57 
_model_server_stats.query_time_ms           330 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           48 
#