data_3CLB # _model_server_result.job_id MrYu-lj35sq-gHFHkMsZ9Q _model_server_result.datetime_utc '2024-11-17 00:34:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3clb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":612}' # _entry.id 3CLB # _exptl.entry_id 3CLB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 370.426 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description TRIMETREXATE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3CLB _cell.length_a 176.571 _cell.length_b 176.571 _cell.length_c 251.848 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3CLB _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,H,I,S,T,U,V,W,Z 1 1 B,C,J,K,L,M,N,O,P,Q,R,X,Y 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 K N N ? 4 P N N ? 4 U N N # _chem_comp.formula 'C19 H24 N5 O3 1' _chem_comp.formula_weight 370.426 _chem_comp.id TMQ _chem_comp.mon_nstd_flag . _chem_comp.name TRIMETREXATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 TMQ doub 399 n y N1 C3A TMQ sing 400 n y N1 HN TMQ sing 401 n n C2 N3 TMQ sing 402 n y C2 N24 TMQ sing 403 n n N3 C4 TMQ doub 404 n y C4 C4A TMQ sing 405 n y C4 N25 TMQ sing 406 n n C3A C4A TMQ doub 407 n y C3A C8 TMQ sing 408 n y C4A C5 TMQ sing 409 n y C5 C6 TMQ doub 410 n y C5 C17 TMQ sing 411 n n C6 C7 TMQ sing 412 n y C6 C9 TMQ sing 413 n n C7 C8 TMQ doub 414 n y C7 H7 TMQ sing 415 n n C8 H8 TMQ sing 416 n n C9 N10 TMQ sing 417 n n C9 H91 TMQ sing 418 n n C9 H92 TMQ sing 419 n n N10 C11 TMQ sing 420 n n N10 HN1 TMQ sing 421 n n C11 C12 TMQ doub 422 n y C11 C16 TMQ sing 423 n y C12 C13 TMQ sing 424 n y C12 H12 TMQ sing 425 n n C13 C14 TMQ doub 426 n y C13 O18 TMQ sing 427 n n C14 C15 TMQ sing 428 n y C14 O19 TMQ sing 429 n n C15 C16 TMQ doub 430 n y C15 O20 TMQ sing 431 n n C16 H16 TMQ sing 432 n n C17 H171 TMQ sing 433 n n C17 H172 TMQ sing 434 n n C17 H173 TMQ sing 435 n n O18 C21 TMQ sing 436 n n O19 C22 TMQ sing 437 n n O20 C23 TMQ sing 438 n n C21 H211 TMQ sing 439 n n C21 H212 TMQ sing 440 n n C21 H213 TMQ sing 441 n n C22 H221 TMQ sing 442 n n C22 H222 TMQ sing 443 n n C22 H223 TMQ sing 444 n n C23 H231 TMQ sing 445 n n C23 H232 TMQ sing 446 n n C23 H233 TMQ sing 447 n n N24 HN21 TMQ sing 448 n n N24 HN22 TMQ sing 449 n n N25 HN51 TMQ sing 450 n n N25 HN52 TMQ sing 451 n n # _atom_sites.entry_id 3CLB _atom_sites.fract_transf_matrix[1][1] 0.005663 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005663 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003971 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 SO4 A 1 701 701 SO4 SO4 . F 3 NAP A 1 601 601 NAP NAP . G 4 TMQ A 1 611 611 TMQ TMQ . H 5 EDO A 1 801 801 EDO EDO . I 5 EDO A 1 802 802 EDO EDO . J 3 NAP B 1 602 602 NAP NAP . K 4 TMQ B 1 612 612 TMQ TMQ . L 5 EDO B 1 805 805 EDO EDO . M 2 SO4 C 1 702 702 SO4 SO4 . N 2 SO4 C 1 703 703 SO4 SO4 . O 3 NAP C 1 603 603 NAP NAP . P 4 TMQ C 1 613 613 TMQ TMQ . Q 5 EDO C 1 803 803 EDO EDO . R 5 EDO C 1 806 806 EDO EDO . S 2 SO4 D 1 704 704 SO4 SO4 . T 3 NAP D 1 604 604 NAP NAP . U 4 TMQ D 1 614 614 TMQ TMQ . V 5 EDO D 1 804 804 EDO EDO . W 6 HOH A 1 803 3 HOH HOH . W 6 HOH A 2 804 18 HOH HOH . W 6 HOH A 3 805 23 HOH HOH . W 6 HOH A 4 806 25 HOH HOH . W 6 HOH A 5 807 26 HOH HOH . W 6 HOH A 6 808 27 HOH HOH . W 6 HOH A 7 809 33 HOH HOH . W 6 HOH A 8 810 38 HOH HOH . W 6 HOH A 9 811 43 HOH HOH . W 6 HOH A 10 812 47 HOH HOH . W 6 HOH A 11 813 49 HOH HOH . W 6 HOH A 12 814 51 HOH HOH . W 6 HOH A 13 815 52 HOH HOH . W 6 HOH A 14 816 54 HOH HOH . W 6 HOH A 15 817 67 HOH HOH . W 6 HOH A 16 818 74 HOH HOH . W 6 HOH A 17 819 75 HOH HOH . W 6 HOH A 18 820 81 HOH HOH . W 6 HOH A 19 821 82 HOH HOH . X 6 HOH B 1 806 12 HOH HOH . X 6 HOH B 2 807 16 HOH HOH . X 6 HOH B 3 808 24 HOH HOH . X 6 HOH B 4 809 29 HOH HOH . X 6 HOH B 5 810 34 HOH HOH . X 6 HOH B 6 811 40 HOH HOH . X 6 HOH B 7 812 41 HOH HOH . X 6 HOH B 8 813 44 HOH HOH . X 6 HOH B 9 814 45 HOH HOH . X 6 HOH B 10 815 48 HOH HOH . X 6 HOH B 11 816 55 HOH HOH . X 6 HOH B 12 817 58 HOH HOH . X 6 HOH B 13 818 59 HOH HOH . X 6 HOH B 14 819 64 HOH HOH . X 6 HOH B 15 820 72 HOH HOH . X 6 HOH B 16 821 77 HOH HOH . X 6 HOH B 17 822 79 HOH HOH . X 6 HOH B 18 823 80 HOH HOH . X 6 HOH B 19 824 88 HOH HOH . X 6 HOH B 20 825 89 HOH HOH . X 6 HOH B 21 826 93 HOH HOH . Y 6 HOH C 1 807 2 HOH HOH . Y 6 HOH C 2 808 5 HOH HOH . Y 6 HOH C 3 809 7 HOH HOH . Y 6 HOH C 4 810 8 HOH HOH . Y 6 HOH C 5 811 10 HOH HOH . Y 6 HOH C 6 812 11 HOH HOH . Y 6 HOH C 7 813 13 HOH HOH . Y 6 HOH C 8 814 15 HOH HOH . Y 6 HOH C 9 815 17 HOH HOH . Y 6 HOH C 10 816 20 HOH HOH . Y 6 HOH C 11 817 22 HOH HOH . Y 6 HOH C 12 818 31 HOH HOH . Y 6 HOH C 13 819 39 HOH HOH . Y 6 HOH C 14 820 42 HOH HOH . Y 6 HOH C 15 821 50 HOH HOH . Y 6 HOH C 16 822 56 HOH HOH . Y 6 HOH C 17 823 60 HOH HOH . Y 6 HOH C 18 824 61 HOH HOH . Y 6 HOH C 19 825 62 HOH HOH . Y 6 HOH C 20 826 66 HOH HOH . Y 6 HOH C 21 827 68 HOH HOH . Y 6 HOH C 22 828 71 HOH HOH . Y 6 HOH C 23 829 73 HOH HOH . Y 6 HOH C 24 830 76 HOH HOH . Y 6 HOH C 25 831 83 HOH HOH . Y 6 HOH C 26 832 84 HOH HOH . Y 6 HOH C 27 833 85 HOH HOH . Y 6 HOH C 28 834 87 HOH HOH . Y 6 HOH C 29 835 90 HOH HOH . Y 6 HOH C 30 836 94 HOH HOH . Z 6 HOH D 1 805 1 HOH HOH . Z 6 HOH D 2 806 4 HOH HOH . Z 6 HOH D 3 807 6 HOH HOH . Z 6 HOH D 4 808 9 HOH HOH . Z 6 HOH D 5 809 14 HOH HOH . Z 6 HOH D 6 810 19 HOH HOH . Z 6 HOH D 7 811 21 HOH HOH . Z 6 HOH D 8 812 28 HOH HOH . Z 6 HOH D 9 813 30 HOH HOH . Z 6 HOH D 10 814 32 HOH HOH . Z 6 HOH D 11 815 35 HOH HOH . Z 6 HOH D 12 816 36 HOH HOH . Z 6 HOH D 13 817 37 HOH HOH . Z 6 HOH D 14 818 46 HOH HOH . Z 6 HOH D 15 819 53 HOH HOH . Z 6 HOH D 16 820 57 HOH HOH . Z 6 HOH D 17 821 63 HOH HOH . Z 6 HOH D 18 822 65 HOH HOH . Z 6 HOH D 19 823 69 HOH HOH . Z 6 HOH D 20 824 70 HOH HOH . Z 6 HOH D 21 825 78 HOH HOH . Z 6 HOH D 22 826 86 HOH HOH . Z 6 HOH D 23 827 91 HOH HOH . Z 6 HOH D 24 828 92 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 TMQ . . . K 4 18.673 -26.707 42.62 0.5 73.24 ? N1 TMQ 612 B 1 HETATM 2 C C2 TMQ . . . K 4 19.226 -25.928 41.676 0.5 73.07 ? C2 TMQ 612 B 1 HETATM 3 N N3 TMQ . . . K 4 19.967 -26.471 40.702 0.5 73.06 ? N3 TMQ 612 B 1 HETATM 4 C C4 TMQ . . . K 4 20.163 -27.799 40.661 0.5 73.2 ? C4 TMQ 612 B 1 HETATM 5 C C3A TMQ . . . K 4 18.839 -28.043 42.62 0.5 73.3 ? C3A TMQ 612 B 1 HETATM 6 C C4A TMQ . . . K 4 19.605 -28.66 41.625 0.5 73.27 ? C4A TMQ 612 B 1 HETATM 7 C C5 TMQ . . . K 4 19.766 -30.067 41.649 0.5 73.2 ? C5 TMQ 612 B 1 HETATM 8 C C6 TMQ . . . K 4 19.152 -30.821 42.668 0.5 73.19 ? C6 TMQ 612 B 1 HETATM 9 C C7 TMQ . . . K 4 18.4 -30.179 43.648 0.5 73.16 ? C7 TMQ 612 B 1 HETATM 10 C C8 TMQ . . . K 4 18.241 -28.798 43.625 0.5 73.17 ? C8 TMQ 612 B 1 HETATM 11 C C9 TMQ . . . K 4 19.279 -32.218 42.755 0.5 73.23 ? C9 TMQ 612 B 1 HETATM 12 N N10 TMQ . . . K 4 18.301 -32.905 41.892 0.5 73.91 ? N10 TMQ 612 B 1 HETATM 13 C C11 TMQ . . . K 4 17.017 -33.1 42.242 0.5 74.19 ? C11 TMQ 612 B 1 HETATM 14 C C12 TMQ . . . K 4 16.023 -32.229 41.771 0.5 73.99 ? C12 TMQ 612 B 1 HETATM 15 C C13 TMQ . . . K 4 14.688 -32.437 42.128 0.5 74.05 ? C13 TMQ 612 B 1 HETATM 16 C C14 TMQ . . . K 4 14.359 -33.518 42.958 0.5 74.14 ? C14 TMQ 612 B 1 HETATM 17 C C15 TMQ . . . K 4 15.348 -34.387 43.435 0.5 74.22 ? C15 TMQ 612 B 1 HETATM 18 C C16 TMQ . . . K 4 16.681 -34.181 43.067 0.5 74.22 ? C16 TMQ 612 B 1 HETATM 19 C C17 TMQ . . . K 4 20.514 -30.734 40.672 0.5 73.07 ? C17 TMQ 612 B 1 HETATM 20 O O18 TMQ . . . K 4 13.67 -31.62 41.712 0.5 74.02 ? O18 TMQ 612 B 1 HETATM 21 O O19 TMQ . . . K 4 13.055 -33.717 43.322 0.5 73.97 ? O19 TMQ 612 B 1 HETATM 22 O O20 TMQ . . . K 4 14.954 -35.421 44.239 0.5 74 ? O20 TMQ 612 B 1 HETATM 23 C C21 TMQ . . . K 4 13.359 -31.754 40.31 0.5 73.8 ? C21 TMQ 612 B 1 HETATM 24 C C22 TMQ . . . K 4 12.392 -34.703 42.506 0.5 74.05 ? C22 TMQ 612 B 1 HETATM 25 C C23 TMQ . . . K 4 15.301 -35.216 45.627 0.5 73.78 ? C23 TMQ 612 B 1 HETATM 26 N N24 TMQ . . . K 4 19.037 -24.614 41.709 0.5 73.05 ? N24 TMQ 612 B 1 HETATM 27 N N25 TMQ . . . K 4 20.896 -28.323 39.692 0.5 73.14 ? N25 TMQ 612 B 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #