data_3CLK # _model_server_result.job_id EARUB62JdXY6MB5rjU_g1w _model_server_result.datetime_utc '2025-02-05 09:58:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3clk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":500}' # _entry.id 3CLK # _exptl.entry_id 3CLK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3CLK _cell.length_a 71.842 _cell.length_b 72.178 _cell.length_c 104.711 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3CLK _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C VAL 66 A VAL 119 1_555 A N MSE 67 A MSE 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale2 A C MSE 67 A MSE 120 1_555 A N GLY 68 A GLY 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 A C SER 95 A SER 148 1_555 A N MSE 96 A MSE 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 A C MSE 96 A MSE 149 1_555 A N GLY 97 A GLY 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 A C ALA 176 A ALA 229 1_555 A N MSE 177 A MSE 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale6 A C MSE 177 A MSE 230 1_555 A N LYS 178 A LYS 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale7 A C ASP 194 A ASP 247 1_555 A N MSE 195 A MSE 248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale8 A C MSE 195 A MSE 248 1_555 A N THR 196 A THR 249 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale9 A C GLU 224 A GLU 277 1_555 A N MSE 225 A MSE 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale10 A C MSE 225 A MSE 278 1_555 A N CYS 226 A CYS 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale11 A C GLN 242 A GLN 295 1_555 A N MSE 243 A MSE 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale12 A C MSE 243 A MSE 296 1_555 A N GLY 244 A GLY 297 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale13 B C VAL 66 B VAL 119 1_555 B N MSE 67 B MSE 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale14 B C MSE 67 B MSE 120 1_555 B N GLY 68 B GLY 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale15 B C SER 95 B SER 148 1_555 B N MSE 96 B MSE 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale16 B C MSE 96 B MSE 149 1_555 B N GLY 97 B GLY 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale17 B C ALA 176 B ALA 229 1_555 B N MSE 177 B MSE 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale18 B C MSE 177 B MSE 230 1_555 B N LYS 178 B LYS 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale19 B C ASP 194 B ASP 247 1_555 B N MSE 195 B MSE 248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale20 B C MSE 195 B MSE 248 1_555 B N THR 196 B THR 249 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale21 B C GLU 224 B GLU 277 1_555 B N MSE 225 B MSE 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale22 B C MSE 225 B MSE 278 1_555 B N CYS 226 B CYS 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale23 B C GLN 242 B GLN 295 1_555 B N MSE 243 B MSE 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale24 B C MSE 243 B MSE 296 1_555 B N GLY 244 B GLY 297 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3CLK _atom_sites.fract_transf_matrix[1][1] 0.013919 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013855 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00955 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 500 5000 GOL GOL . D 3 HOH A 1 501 2 HOH TIP . D 3 HOH A 2 502 3 HOH TIP . D 3 HOH A 3 503 6 HOH TIP . D 3 HOH A 4 504 10 HOH TIP . D 3 HOH A 5 505 11 HOH TIP . D 3 HOH A 6 506 22 HOH TIP . D 3 HOH A 7 507 24 HOH TIP . D 3 HOH A 8 508 25 HOH TIP . D 3 HOH A 9 509 28 HOH TIP . D 3 HOH A 10 510 29 HOH TIP . D 3 HOH A 11 511 30 HOH TIP . D 3 HOH A 12 512 33 HOH TIP . D 3 HOH A 13 513 36 HOH TIP . D 3 HOH A 14 514 39 HOH TIP . D 3 HOH A 15 515 40 HOH TIP . D 3 HOH A 16 516 41 HOH TIP . D 3 HOH A 17 517 42 HOH TIP . D 3 HOH A 18 518 43 HOH TIP . D 3 HOH A 19 519 46 HOH TIP . D 3 HOH A 20 520 47 HOH TIP . D 3 HOH A 21 521 48 HOH TIP . D 3 HOH A 22 522 51 HOH TIP . D 3 HOH A 23 523 52 HOH TIP . D 3 HOH A 24 524 54 HOH TIP . D 3 HOH A 25 525 55 HOH TIP . D 3 HOH A 26 526 65 HOH TIP . D 3 HOH A 27 527 68 HOH TIP . D 3 HOH A 28 528 69 HOH TIP . D 3 HOH A 29 529 71 HOH TIP . D 3 HOH A 30 530 72 HOH TIP . D 3 HOH A 31 531 73 HOH TIP . D 3 HOH A 32 532 75 HOH TIP . D 3 HOH A 33 533 76 HOH TIP . D 3 HOH A 34 534 79 HOH TIP . D 3 HOH A 35 535 80 HOH TIP . D 3 HOH A 36 536 83 HOH TIP . D 3 HOH A 37 537 87 HOH TIP . D 3 HOH A 38 538 91 HOH TIP . D 3 HOH A 39 539 97 HOH TIP . D 3 HOH A 40 540 99 HOH TIP . D 3 HOH A 41 541 103 HOH TIP . D 3 HOH A 42 542 108 HOH TIP . D 3 HOH A 43 543 110 HOH TIP . D 3 HOH A 44 544 114 HOH TIP . D 3 HOH A 45 545 115 HOH TIP . D 3 HOH A 46 546 116 HOH TIP . D 3 HOH A 47 547 117 HOH TIP . D 3 HOH A 48 548 118 HOH TIP . D 3 HOH A 49 549 120 HOH TIP . D 3 HOH A 50 550 122 HOH TIP . D 3 HOH A 51 551 124 HOH TIP . D 3 HOH A 52 552 125 HOH TIP . D 3 HOH A 53 553 128 HOH TIP . D 3 HOH A 54 554 137 HOH TIP . D 3 HOH A 55 555 138 HOH TIP . D 3 HOH A 56 556 139 HOH TIP . D 3 HOH A 57 557 140 HOH TIP . D 3 HOH A 58 558 141 HOH TIP . D 3 HOH A 59 559 145 HOH TIP . D 3 HOH A 60 560 147 HOH TIP . D 3 HOH A 61 561 148 HOH TIP . D 3 HOH A 62 562 150 HOH TIP . D 3 HOH A 63 563 152 HOH TIP . D 3 HOH A 64 564 155 HOH TIP . D 3 HOH A 65 565 157 HOH TIP . D 3 HOH A 66 566 158 HOH TIP . D 3 HOH A 67 567 159 HOH TIP . D 3 HOH A 68 568 163 HOH TIP . D 3 HOH A 69 569 164 HOH TIP . D 3 HOH A 70 570 170 HOH TIP . D 3 HOH A 71 571 171 HOH TIP . D 3 HOH A 72 572 172 HOH TIP . D 3 HOH A 73 573 175 HOH TIP . D 3 HOH A 74 574 177 HOH TIP . D 3 HOH A 75 575 180 HOH TIP . D 3 HOH A 76 576 182 HOH TIP . D 3 HOH A 77 577 184 HOH TIP . D 3 HOH A 78 578 187 HOH TIP . D 3 HOH A 79 579 188 HOH TIP . D 3 HOH A 80 580 189 HOH TIP . D 3 HOH A 81 581 190 HOH TIP . D 3 HOH A 82 582 191 HOH TIP . D 3 HOH A 83 583 192 HOH TIP . E 3 HOH B 1 344 1 HOH TIP . E 3 HOH B 2 345 4 HOH TIP . E 3 HOH B 3 346 5 HOH TIP . E 3 HOH B 4 347 8 HOH TIP . E 3 HOH B 5 348 9 HOH TIP . E 3 HOH B 6 349 12 HOH TIP . E 3 HOH B 7 350 13 HOH TIP . E 3 HOH B 8 351 14 HOH TIP . E 3 HOH B 9 352 15 HOH TIP . E 3 HOH B 10 353 16 HOH TIP . E 3 HOH B 11 354 17 HOH TIP . E 3 HOH B 12 355 18 HOH TIP . E 3 HOH B 13 356 20 HOH TIP . E 3 HOH B 14 357 21 HOH TIP . E 3 HOH B 15 358 23 HOH TIP . E 3 HOH B 16 359 26 HOH TIP . E 3 HOH B 17 360 27 HOH TIP . E 3 HOH B 18 361 31 HOH TIP . E 3 HOH B 19 362 32 HOH TIP . E 3 HOH B 20 363 34 HOH TIP . E 3 HOH B 21 364 35 HOH TIP . E 3 HOH B 22 365 37 HOH TIP . E 3 HOH B 23 366 38 HOH TIP . E 3 HOH B 24 367 44 HOH TIP . E 3 HOH B 25 368 45 HOH TIP . E 3 HOH B 26 369 49 HOH TIP . E 3 HOH B 27 370 50 HOH TIP . E 3 HOH B 28 371 53 HOH TIP . E 3 HOH B 29 372 56 HOH TIP . E 3 HOH B 30 373 57 HOH TIP . E 3 HOH B 31 374 58 HOH TIP . E 3 HOH B 32 375 59 HOH TIP . E 3 HOH B 33 376 60 HOH TIP . E 3 HOH B 34 377 61 HOH TIP . E 3 HOH B 35 378 62 HOH TIP . E 3 HOH B 36 379 63 HOH TIP . E 3 HOH B 37 380 64 HOH TIP . E 3 HOH B 38 381 66 HOH TIP . E 3 HOH B 39 382 67 HOH TIP . E 3 HOH B 40 383 70 HOH TIP . E 3 HOH B 41 384 74 HOH TIP . E 3 HOH B 42 385 77 HOH TIP . E 3 HOH B 43 386 78 HOH TIP . E 3 HOH B 44 387 81 HOH TIP . E 3 HOH B 45 388 82 HOH TIP . E 3 HOH B 46 389 84 HOH TIP . E 3 HOH B 47 390 85 HOH TIP . E 3 HOH B 48 391 86 HOH TIP . E 3 HOH B 49 392 88 HOH TIP . E 3 HOH B 50 393 89 HOH TIP . E 3 HOH B 51 394 90 HOH TIP . E 3 HOH B 52 395 92 HOH TIP . E 3 HOH B 53 396 93 HOH TIP . E 3 HOH B 54 397 94 HOH TIP . E 3 HOH B 55 398 95 HOH TIP . E 3 HOH B 56 399 96 HOH TIP . E 3 HOH B 57 400 98 HOH TIP . E 3 HOH B 58 401 100 HOH TIP . E 3 HOH B 59 402 101 HOH TIP . E 3 HOH B 60 403 102 HOH TIP . E 3 HOH B 61 404 104 HOH TIP . E 3 HOH B 62 405 105 HOH TIP . E 3 HOH B 63 406 106 HOH TIP . E 3 HOH B 64 407 107 HOH TIP . E 3 HOH B 65 408 109 HOH TIP . E 3 HOH B 66 409 111 HOH TIP . E 3 HOH B 67 410 112 HOH TIP . E 3 HOH B 68 411 113 HOH TIP . E 3 HOH B 69 412 119 HOH TIP . E 3 HOH B 70 413 121 HOH TIP . E 3 HOH B 71 414 123 HOH TIP . E 3 HOH B 72 415 126 HOH TIP . E 3 HOH B 73 416 127 HOH TIP . E 3 HOH B 74 417 129 HOH TIP . E 3 HOH B 75 418 130 HOH TIP . E 3 HOH B 76 419 131 HOH TIP . E 3 HOH B 77 420 132 HOH TIP . E 3 HOH B 78 421 133 HOH TIP . E 3 HOH B 79 422 134 HOH TIP . E 3 HOH B 80 423 135 HOH TIP . E 3 HOH B 81 424 136 HOH TIP . E 3 HOH B 82 425 142 HOH TIP . E 3 HOH B 83 426 143 HOH TIP . E 3 HOH B 84 427 144 HOH TIP . E 3 HOH B 85 428 146 HOH TIP . E 3 HOH B 86 429 149 HOH TIP . E 3 HOH B 87 430 151 HOH TIP . E 3 HOH B 88 431 153 HOH TIP . E 3 HOH B 89 432 154 HOH TIP . E 3 HOH B 90 433 156 HOH TIP . E 3 HOH B 91 434 160 HOH TIP . E 3 HOH B 92 435 161 HOH TIP . E 3 HOH B 93 436 162 HOH TIP . E 3 HOH B 94 437 165 HOH TIP . E 3 HOH B 95 438 166 HOH TIP . E 3 HOH B 96 439 167 HOH TIP . E 3 HOH B 97 440 168 HOH TIP . E 3 HOH B 98 441 169 HOH TIP . E 3 HOH B 99 442 173 HOH TIP . E 3 HOH B 100 443 174 HOH TIP . E 3 HOH B 101 444 176 HOH TIP . E 3 HOH B 102 445 178 HOH TIP . E 3 HOH B 103 446 179 HOH TIP . E 3 HOH B 104 447 181 HOH TIP . E 3 HOH B 105 448 183 HOH TIP . E 3 HOH B 106 449 185 HOH TIP . E 3 HOH B 107 450 186 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 2 -18.305 13.59 18.577 1 32.99 ? C1 GOL 500 A 1 HETATM 2 O O1 GOL . . . C 2 -17.71 13.656 19.863 1 32.07 ? O1 GOL 500 A 1 HETATM 3 C C2 GOL . . . C 2 -18.642 12.142 18.259 1 34.31 ? C2 GOL 500 A 1 HETATM 4 O O2 GOL . . . C 2 -20.033 12.03 17.91 1 36.83 ? O2 GOL 500 A 1 HETATM 5 C C3 GOL . . . C 2 -17.763 11.668 17.105 1 34.37 ? C3 GOL 500 A 1 HETATM 6 O O3 GOL . . . C 2 -16.496 11.221 17.617 1 27.2 ? O3 GOL 500 A 1 # _model_server_stats.io_time_ms 98 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 361 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #