data_3CLN # _model_server_result.job_id lcaTWFQczqw6-R6u8GtHSQ _model_server_result.datetime_utc '2024-11-21 23:48:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3cln # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":149}' # _entry.id 3CLN # _exptl.entry_id 3CLN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 94.13 _cell.angle_beta 97.57 _cell.angle_gamma 89.46 _cell.entry_id 3CLN _cell.length_a 29.71 _cell.length_b 53.79 _cell.length_c 24.99 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3CLN _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 20 A ASP 20 1_555 B CA CA . A CA 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc2 A OD1 ASP 22 A ASP 22 1_555 B CA CA . A CA 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? metalc ? metalc3 A OD2 ASP 24 A ASP 24 1_555 B CA CA . A CA 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.611 ? metalc ? metalc4 A O THR 26 A THR 26 1_555 B CA CA . A CA 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.455 ? metalc ? metalc5 A OE2 GLU 31 A GLU 31 1_555 B CA CA . A CA 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc6 A OE1 GLU 31 A GLU 31 1_555 B CA CA . A CA 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc7 A OD2 ASP 56 A ASP 56 1_555 C CA CA . A CA 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? metalc ? metalc8 A OD2 ASP 58 A ASP 58 1_555 C CA CA . A CA 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.479 ? metalc ? metalc9 A OD1 ASN 60 A ASN 60 1_555 C CA CA . A CA 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? metalc ? metalc10 A O THR 62 A THR 62 1_555 C CA CA . A CA 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc11 A OE1 GLU 67 A GLU 67 1_555 C CA CA . A CA 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? metalc ? metalc12 A OE2 GLU 67 A GLU 67 1_555 C CA CA . A CA 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc13 A OD2 ASP 93 A ASP 93 1_555 D CA CA . A CA 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? metalc ? metalc14 A OD2 ASP 95 A ASP 95 1_555 D CA CA . A CA 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? metalc ? metalc15 A OD1 ASN 97 A ASN 97 1_555 D CA CA . A CA 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc16 A O TYR 99 A TYR 99 1_555 D CA CA . A CA 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc17 A OE2 GLU 104 A GLU 104 1_555 D CA CA . A CA 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.764 ? metalc ? metalc18 A OE1 GLU 104 A GLU 104 1_555 D CA CA . A CA 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc19 A OD1 ASN 129 A ASN 129 1_555 E CA CA . A CA 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc20 A OD2 ASP 131 A ASP 131 1_555 E CA CA . A CA 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.558 ? metalc ? metalc21 A OD2 ASP 133 A ASP 133 1_555 E CA CA . A CA 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? metalc ? metalc22 A O GLN 135 A GLN 135 1_555 E CA CA . A CA 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? metalc ? metalc23 A OE1 GLU 140 A GLU 140 1_555 E CA CA . A CA 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.572 ? metalc ? metalc24 A OE2 GLU 140 A GLU 140 1_555 E CA CA . A CA 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc25 B CA CA . A CA 149 1_555 F O HOH . A HOH 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? metalc ? metalc26 C CA CA . A CA 150 1_555 F O HOH . A HOH 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc27 D CA CA . A CA 151 1_555 F O HOH . A HOH 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? metalc ? metalc28 E CA CA . A CA 152 1_555 F O HOH . A HOH 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.625 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3CLN _atom_sites.fract_transf_matrix[1][1] 0.03366 _atom_sites.fract_transf_matrix[1][2] -0.00032 _atom_sites.fract_transf_matrix[1][3] 0.00446 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01859 _atom_sites.fract_transf_matrix[2][3] 0.00133 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.04047 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 149 1 CA CA . C 2 CA A 1 150 2 CA CA . D 2 CA A 1 151 3 CA CA . E 2 CA A 1 152 4 CA CA . F 3 HOH A 1 153 153 HOH HOH . F 3 HOH A 2 154 154 HOH HOH . F 3 HOH A 3 155 155 HOH HOH . F 3 HOH A 4 156 156 HOH HOH . F 3 HOH A 5 157 157 HOH HOH . F 3 HOH A 6 158 158 HOH HOH . F 3 HOH A 7 159 159 HOH HOH . F 3 HOH A 8 160 160 HOH HOH . F 3 HOH A 9 161 161 HOH HOH . F 3 HOH A 10 162 162 HOH HOH . F 3 HOH A 11 163 163 HOH HOH . F 3 HOH A 12 164 164 HOH HOH . F 3 HOH A 13 165 165 HOH HOH . F 3 HOH A 14 166 166 HOH HOH . F 3 HOH A 15 167 167 HOH HOH . F 3 HOH A 16 168 168 HOH HOH . F 3 HOH A 17 169 169 HOH HOH . F 3 HOH A 18 170 170 HOH HOH . F 3 HOH A 19 171 171 HOH HOH . F 3 HOH A 20 172 172 HOH HOH . F 3 HOH A 21 173 173 HOH HOH . F 3 HOH A 22 174 174 HOH HOH . F 3 HOH A 23 175 175 HOH HOH . F 3 HOH A 24 176 176 HOH HOH . F 3 HOH A 25 177 177 HOH HOH . F 3 HOH A 26 178 178 HOH HOH . F 3 HOH A 27 179 179 HOH HOH . F 3 HOH A 28 180 180 HOH HOH . F 3 HOH A 29 181 181 HOH HOH . F 3 HOH A 30 182 182 HOH HOH . F 3 HOH A 31 183 183 HOH HOH . F 3 HOH A 32 184 184 HOH HOH . F 3 HOH A 33 185 185 HOH HOH . F 3 HOH A 34 186 186 HOH HOH . F 3 HOH A 35 187 187 HOH HOH . F 3 HOH A 36 188 188 HOH HOH . F 3 HOH A 37 189 189 HOH HOH . F 3 HOH A 38 190 190 HOH HOH . F 3 HOH A 39 191 191 HOH HOH . F 3 HOH A 40 192 192 HOH HOH . F 3 HOH A 41 193 193 HOH HOH . F 3 HOH A 42 194 194 HOH HOH . F 3 HOH A 43 195 195 HOH HOH . F 3 HOH A 44 196 196 HOH HOH . F 3 HOH A 45 197 197 HOH HOH . F 3 HOH A 46 198 198 HOH HOH . F 3 HOH A 47 199 199 HOH HOH . F 3 HOH A 48 200 200 HOH HOH . F 3 HOH A 49 201 201 HOH HOH . F 3 HOH A 50 202 202 HOH HOH . F 3 HOH A 51 203 203 HOH HOH . F 3 HOH A 52 204 204 HOH HOH . F 3 HOH A 53 205 205 HOH HOH . F 3 HOH A 54 206 206 HOH HOH . F 3 HOH A 55 207 207 HOH HOH . F 3 HOH A 56 208 208 HOH HOH . F 3 HOH A 57 209 209 HOH HOH . F 3 HOH A 58 210 210 HOH HOH . F 3 HOH A 59 211 211 HOH HOH . F 3 HOH A 60 212 212 HOH HOH . F 3 HOH A 61 213 213 HOH HOH . F 3 HOH A 62 214 214 HOH HOH . F 3 HOH A 63 215 215 HOH HOH . F 3 HOH A 64 216 216 HOH HOH . F 3 HOH A 65 217 217 HOH HOH . F 3 HOH A 66 218 218 HOH HOH . F 3 HOH A 67 219 219 HOH HOH . F 3 HOH A 68 220 220 HOH HOH . F 3 HOH A 69 221 221 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x -13.638 _atom_site.Cartn_y 53.352 _atom_site.Cartn_z 31.5 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 12.29 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 149 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #