data_3CLP # _model_server_result.job_id Zs8b4nyNYlEWYbmfsvbMew _model_server_result.datetime_utc '2024-11-14 17:27:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3clp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":2}' # _entry.id 3CLP # _exptl.entry_id 3CLP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 329.206 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.64 _cell.angle_gamma 90 _cell.entry_id 3CLP _cell.length_a 34.535 _cell.length_b 82.011 _cell.length_c 50.119 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3CLP _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C10 H12 N5 O6 P' _chem_comp.formula_weight 329.206 _chem_comp.id CMP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'CYCLIC AMP;CAMP' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P CMP doub 70 n n P O2P CMP sing 71 n n P O5' CMP sing 72 n n P O3' CMP sing 73 n n O2P HOP2 CMP sing 74 n n O5' C5' CMP sing 75 n n C5' C4' CMP sing 76 n n C5' "H5'1" CMP sing 77 n n C5' "H5'2" CMP sing 78 n n C4' O4' CMP sing 79 n n C4' C3' CMP sing 80 n n C4' H4' CMP sing 81 n n O4' C1' CMP sing 82 n n C3' O3' CMP sing 83 n n C3' C2' CMP sing 84 n n C3' H3' CMP sing 85 n n C2' O2' CMP sing 86 n n C2' C1' CMP sing 87 n n C2' H2' CMP sing 88 n n O2' HO2' CMP sing 89 n n C1' N9 CMP sing 90 n n C1' H1' CMP sing 91 n n N9 C8 CMP sing 92 n y N9 C4 CMP sing 93 n y C8 N7 CMP doub 94 n y C8 H8 CMP sing 95 n n N7 C5 CMP sing 96 n y C5 C6 CMP sing 97 n y C5 C4 CMP doub 98 n y C6 N6 CMP sing 99 n n C6 N1 CMP doub 100 n y N6 HN61 CMP sing 101 n n N6 HN62 CMP sing 102 n n N1 C2 CMP sing 103 n y C2 N3 CMP doub 104 n y C2 H2 CMP sing 105 n n N3 C4 CMP sing 106 n y # _atom_sites.entry_id 3CLP _atom_sites.fract_transf_matrix[1][1] 0.028956 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007027 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012193 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020532 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CMP A 1 1 1 CMP CMP . D 2 CMP C 1 2 2 CMP CMP . E 3 HOH A 1 356 1 HOH HOH . E 3 HOH A 2 357 2 HOH HOH . E 3 HOH A 3 358 3 HOH HOH . E 3 HOH A 4 359 4 HOH HOH . E 3 HOH A 5 360 5 HOH HOH . E 3 HOH A 6 361 6 HOH HOH . E 3 HOH A 7 362 7 HOH HOH . E 3 HOH A 8 363 8 HOH HOH . E 3 HOH A 9 364 9 HOH HOH . E 3 HOH A 10 365 10 HOH HOH . E 3 HOH A 11 366 11 HOH HOH . E 3 HOH A 12 367 12 HOH HOH . E 3 HOH A 13 368 13 HOH HOH . E 3 HOH A 14 369 14 HOH HOH . E 3 HOH A 15 370 15 HOH HOH . E 3 HOH A 16 371 16 HOH HOH . E 3 HOH A 17 372 17 HOH HOH . E 3 HOH A 18 373 18 HOH HOH . E 3 HOH A 19 374 19 HOH HOH . E 3 HOH A 20 375 20 HOH HOH . E 3 HOH A 21 376 21 HOH HOH . E 3 HOH A 22 377 22 HOH HOH . E 3 HOH A 23 378 23 HOH HOH . E 3 HOH A 24 379 24 HOH HOH . E 3 HOH A 25 380 25 HOH HOH . E 3 HOH A 26 381 26 HOH HOH . E 3 HOH A 27 382 27 HOH HOH . E 3 HOH A 28 383 28 HOH HOH . E 3 HOH A 29 384 29 HOH HOH . E 3 HOH A 30 385 30 HOH HOH . E 3 HOH A 31 386 31 HOH HOH . E 3 HOH A 32 387 32 HOH HOH . E 3 HOH A 33 388 33 HOH HOH . E 3 HOH A 34 389 34 HOH HOH . E 3 HOH A 35 390 35 HOH HOH . E 3 HOH A 36 391 36 HOH HOH . E 3 HOH A 37 392 37 HOH HOH . E 3 HOH A 38 393 38 HOH HOH . E 3 HOH A 39 394 39 HOH HOH . E 3 HOH A 40 395 40 HOH HOH . E 3 HOH A 41 396 41 HOH HOH . E 3 HOH A 42 397 42 HOH HOH . E 3 HOH A 43 398 43 HOH HOH . E 3 HOH A 44 399 44 HOH HOH . E 3 HOH A 45 400 45 HOH HOH . E 3 HOH A 46 401 46 HOH HOH . E 3 HOH A 47 402 47 HOH HOH . E 3 HOH A 48 403 48 HOH HOH . E 3 HOH A 49 404 49 HOH HOH . E 3 HOH A 50 405 50 HOH HOH . E 3 HOH A 51 406 51 HOH HOH . E 3 HOH A 52 407 52 HOH HOH . E 3 HOH A 53 408 53 HOH HOH . E 3 HOH A 54 409 54 HOH HOH . E 3 HOH A 55 410 55 HOH HOH . E 3 HOH A 56 411 56 HOH HOH . E 3 HOH A 57 412 57 HOH HOH . E 3 HOH A 58 413 59 HOH HOH . E 3 HOH A 59 414 60 HOH HOH . E 3 HOH A 60 415 61 HOH HOH . E 3 HOH A 61 416 62 HOH HOH . E 3 HOH A 62 417 63 HOH HOH . E 3 HOH A 63 418 64 HOH HOH . E 3 HOH A 64 419 65 HOH HOH . E 3 HOH A 65 420 66 HOH HOH . E 3 HOH A 66 421 67 HOH HOH . E 3 HOH A 67 422 68 HOH HOH . E 3 HOH A 68 423 69 HOH HOH . E 3 HOH A 69 424 70 HOH HOH . E 3 HOH A 70 425 73 HOH HOH . E 3 HOH A 71 426 74 HOH HOH . E 3 HOH A 72 427 75 HOH HOH . E 3 HOH A 73 428 76 HOH HOH . E 3 HOH A 74 429 78 HOH HOH . E 3 HOH A 75 430 79 HOH HOH . E 3 HOH A 76 431 81 HOH HOH . E 3 HOH A 77 432 82 HOH HOH . E 3 HOH A 78 433 83 HOH HOH . E 3 HOH A 79 434 84 HOH HOH . E 3 HOH A 80 435 85 HOH HOH . E 3 HOH A 81 436 87 HOH HOH . E 3 HOH A 82 437 88 HOH HOH . E 3 HOH A 83 438 89 HOH HOH . F 3 HOH C 1 90 90 HOH HOH . F 3 HOH C 2 91 91 HOH HOH . F 3 HOH C 3 92 92 HOH HOH . F 3 HOH C 4 93 93 HOH HOH . F 3 HOH C 5 94 94 HOH HOH . F 3 HOH C 6 95 95 HOH HOH . F 3 HOH C 7 96 96 HOH HOH . F 3 HOH C 8 97 97 HOH HOH . F 3 HOH C 9 98 98 HOH HOH . F 3 HOH C 10 99 99 HOH HOH . F 3 HOH C 11 100 100 HOH HOH . F 3 HOH C 12 101 101 HOH HOH . F 3 HOH C 13 102 102 HOH HOH . F 3 HOH C 14 103 103 HOH HOH . F 3 HOH C 15 104 104 HOH HOH . F 3 HOH C 16 105 105 HOH HOH . F 3 HOH C 17 106 106 HOH HOH . F 3 HOH C 18 107 107 HOH HOH . F 3 HOH C 19 108 108 HOH HOH . F 3 HOH C 20 109 109 HOH HOH . F 3 HOH C 21 110 110 HOH HOH . F 3 HOH C 22 111 111 HOH HOH . F 3 HOH C 23 112 112 HOH HOH . F 3 HOH C 24 113 113 HOH HOH . F 3 HOH C 25 114 114 HOH HOH . F 3 HOH C 26 115 115 HOH HOH . F 3 HOH C 27 116 116 HOH HOH . F 3 HOH C 28 117 117 HOH HOH . F 3 HOH C 29 120 120 HOH HOH . F 3 HOH C 30 121 121 HOH HOH . F 3 HOH C 31 123 123 HOH HOH . F 3 HOH C 32 124 124 HOH HOH . F 3 HOH C 33 125 125 HOH HOH . F 3 HOH C 34 126 126 HOH HOH . F 3 HOH C 35 127 127 HOH HOH . F 3 HOH C 36 128 128 HOH HOH . F 3 HOH C 37 129 129 HOH HOH . F 3 HOH C 38 130 130 HOH HOH . F 3 HOH C 39 131 131 HOH HOH . F 3 HOH C 40 132 132 HOH HOH . F 3 HOH C 41 133 133 HOH HOH . F 3 HOH C 42 134 134 HOH HOH . F 3 HOH C 43 136 136 HOH HOH . F 3 HOH C 44 137 137 HOH HOH . F 3 HOH C 45 138 138 HOH HOH . F 3 HOH C 46 139 139 HOH HOH . F 3 HOH C 47 140 140 HOH HOH . F 3 HOH C 48 141 141 HOH HOH . F 3 HOH C 49 142 142 HOH HOH . F 3 HOH C 50 143 143 HOH HOH . F 3 HOH C 51 144 144 HOH HOH . F 3 HOH C 52 145 145 HOH HOH . F 3 HOH C 53 146 146 HOH HOH . F 3 HOH C 54 148 148 HOH HOH . F 3 HOH C 55 149 149 HOH HOH . F 3 HOH C 56 151 151 HOH HOH . F 3 HOH C 57 152 152 HOH HOH . F 3 HOH C 58 153 153 HOH HOH . F 3 HOH C 59 154 154 HOH HOH . F 3 HOH C 60 155 155 HOH HOH . F 3 HOH C 61 156 156 HOH HOH . F 3 HOH C 62 157 157 HOH HOH . F 3 HOH C 63 158 158 HOH HOH . F 3 HOH C 64 159 159 HOH HOH . F 3 HOH C 65 160 160 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P CMP . . . D 2 -4.516 14.062 12.323 1 16.43 ? P CMP 2 C 1 HETATM 2 O O1P CMP . . . D 2 -4.796 15.532 12.52 1 16.43 ? O1P CMP 2 C 1 HETATM 3 O O2P CMP . . . D 2 -4.622 13.296 13.614 1 17.57 ? O2P CMP 2 C 1 HETATM 4 O O5' CMP . . . D 2 -5.532 13.491 11.211 1 17.4 ? O5' CMP 2 C 1 HETATM 5 C C5' CMP . . . D 2 -5.426 13.905 9.833 1 15.64 ? C5' CMP 2 C 1 HETATM 6 C C4' CMP . . . D 2 -3.994 13.6 9.408 1 15.48 ? C4' CMP 2 C 1 HETATM 7 O O4' CMP . . . D 2 -3.65 14.067 8.097 1 15.8 ? O4' CMP 2 C 1 HETATM 8 C C3' CMP . . . D 2 -3.02 14.351 10.299 1 15.68 ? C3' CMP 2 C 1 HETATM 9 O O3' CMP . . . D 2 -3.081 13.83 11.641 1 16.25 ? O3' CMP 2 C 1 HETATM 10 C C2' CMP . . . D 2 -1.713 14.278 9.538 1 15.17 ? C2' CMP 2 C 1 HETATM 11 O O2' CMP . . . D 2 -1.158 12.964 9.664 1 15.45 ? O2' CMP 2 C 1 HETATM 12 C C1' CMP . . . D 2 -2.25 14.458 8.102 1 14.76 ? C1' CMP 2 C 1 HETATM 13 N N9 CMP . . . D 2 -2.014 15.894 7.724 1 14.93 ? N9 CMP 2 C 1 HETATM 14 C C8 CMP . . . D 2 -2.604 17.002 8.242 1 14.47 ? C8 CMP 2 C 1 HETATM 15 N N7 CMP . . . D 2 -2.131 18.145 7.677 1 14.21 ? N7 CMP 2 C 1 HETATM 16 C C5 CMP . . . D 2 -1.202 17.769 6.772 1 14.46 ? C5 CMP 2 C 1 HETATM 17 C C6 CMP . . . D 2 -0.305 18.45 5.81 1 13.95 ? C6 CMP 2 C 1 HETATM 18 N N6 CMP . . . D 2 -0.286 19.802 5.694 1 13.61 ? N6 CMP 2 C 1 HETATM 19 N N1 CMP . . . D 2 0.509 17.675 5.049 1 14.04 ? N1 CMP 2 C 1 HETATM 20 C C2 CMP . . . D 2 0.532 16.331 5.127 1 13 ? C2 CMP 2 C 1 HETATM 21 N N3 CMP . . . D 2 -0.248 15.634 5.968 1 13.93 ? N3 CMP 2 C 1 HETATM 22 C C4 CMP . . . D 2 -1.12 16.288 6.804 1 14.62 ? C4 CMP 2 C 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 22 #